1N62B

Crystal structure of the mo,cu-co dehydrogenase (codh), n-butylisocyanide-bound state
Total Genus 280
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
280
sequence length
804
structure length
804
Chain Sequence
TVEPTSAERAEKLQGMGCKRKRVEDIRFTQGKGNYVDDVKLPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLKPLNLHYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAMEPDAPLLREDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNSPPPNLEPGLEAVNYYDPPNMTYPFGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETPKWETDYTVTPSPHHPIGAKGVGESPHVGGVPCFSNAVNDAYAFLNAGHIQMPHDAWRLWKVGEQLGLHV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Catalysis at a dinuclear [CuSMo(=O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Carbon monoxide dehydrogenase small chain
total genus 280
structure length 804
sequence length 804
chains with identical sequence E
ec nomenclature ec 1.2.5.3: Aerobic carbon monoxide dehydrogenase.
pdb deposition date 2002-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01315 Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
B PF02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1n62B03
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1n62B02
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1n62B05
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1n62B04
3.90.1170.50 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 1n62B01
3NVYC 4ZOHA 1N5WB 4USAA 1VLBA 1WYGA 2W54B 3AMZA 3ETRC 4C7ZA 1ZXIB 3HRDA 1N61B 1FO4A 3EUB4 1FIQC 3NS1C 1N60B 3FAHA 3NVVC 3SR6C 2W3SB 2W3RB 4US9A 1V97A 1FFUB 1DGJA 3FC4A 1JROB 3AM9A 1SB3A 3NRZC 3AN1A 3B9JC 1JRPB 4C80A 1N62B 4US8A 3HRDB 1RM6A 1FFVB 1N5XA 2E3TA 4C7YA 1N63B 2W55B 1SIJA 3NVZC 3NVWC 1VDVA 3L4PA
chains in the Genus database with same CATH superfamily
2ZJQJ 5JVHJ 5HUOA 1VLBA 2W54B 1Y69K 3AMZA 3ETRC 5GADN 4WF9J 1K9MJ 1YTKA 3CCEH 3SR6C 3CC4H 4XR5A 2TPTA 3PIOJ 4AP8A 1Q81J 4GA5A 3C2EA 4X46A 3NRZC 1OTPA 2WP4A 4EADA 1JRPB 1N62B 1RM6A 1YI2H 2I14A 3CMAH 2JBMA 1N5XA 2E3TA 4C7YA 3PAJA 3CXCH 3L0GA 3CCUH 1SIJA 1YJWH 4WCEJ 4UY8M 2B7NA 3L4PA 3NVYC 5EP8A 2J0FA 1WKIA 5HUPA 3TQVA 4USAA 1FM0E 2WK6A 3C2RA 1NJIJ 2Q5WE 1K73J 2DSJA 1FO4A 2QA4H 1QAPA 5EY3A 3NS1C 3RPFA 3PIPJ 3CCSH 1W2BH 4EAFA 1KC8J 3WO1A 1NVIE 1DGJA 1QPRA 1VQLH 4IOAJ 1M1KJ 3CC7H 4I9AA 1Q86J 2ZJRJ 1FFVB 4WFBJ 3C2VA 5AYYA 1FMAE 1YJNH 1Q7YJ 2ZJPJ 1VQ7H 1QPQA 2OTJH 1N63B 2W55B 3I56H 3CCLH 3NVWC 3C2FA 5GAHN 1VDVA 2WK5A 4YEKA 4ZOHA 1VQOH 1M90J 1T3QB 5GAGN 1VQ9H 5H1SO 4C7ZA 1ZXIB 1YITH 2OTLH 5HULA 1YJ9H 5HL7J 1FIQC 1VQ6H 1YTDA 3CCRH 4YYYA 1N60B 3FAHA 4U67J 2W3SB 2W3RB 4US9A 1V97A 3CCVH 1YIJH 1FFUB 3FC4A 3AM9A 1SB3A 3G6EH 1O4UA 3CCQH 1VQ4H 4KWWA 3OW2H 1BRWA 1QPNA 4IO9J 1QVGH 3J7ZM 1VQNH 1K8AJ 1VQ5H 4C80A 3DLLJ 4US8A 1NVJA 5DM6J 5GAEN 1X1OA 1QPOA 2OMDA 1UOUA 3G71H 1KD1J 5DM7J 2B7QA 4LHMA 5AYXA 5MPOC 4GA6A 3CF5J 1N5WB 3G4SH 1YHQH 1WYGA 1S72H 1JJ2H 3VMMA 2QIEA 3HRDA 1N61B 1VQ8H 3EUB4 3CPWH 3NVVC 3I55H 3BIIE 1Q82J 5AN9F 3WNZA 4WFAJ 2PA2A 1JROB 3CCJH 1YTEA 5MLCO 3CCMH 2B7PA 1VQKH 3CMEH 3AN1A 3C2OA 3H5QA 3B9JC 4IOCJ 1AZYA 4GA4A 3GNNA 3HRDB 1N8RJ 3CD6H 2QEXH 1QVFH 2I1OA 1VQPH 4WFNJ 1VQMH 1KQSH 3NVZC 5JVGJ 3CC2H 3WO0A 5AYZA 4KWVA
chains in the Genus database with same CATH topology
3NVYC 4ZOHA 1N5WB 4USAA 1VLBA 1WYGA 2W54B 3AMZA 3ETRC 4C7ZA 1ZXIB 3HRDA 1N61B 1FO4A 3EUB4 1FIQC 3NS1C 1N60B 3FAHA 3NVVC 3SR6C 2W3SB 2W3RB 4US9A 1V97A 1FFUB 1DGJA 3FC4A 1JROB 3AM9A 1SB3A 3NRZC 3AN1A 3B9JC 1JRPB 4C80A 1N62B 4US8A 3HRDB 1RM6A 1FFVB 1N5XA 2E3TA 4C7YA 1N63B 2W55B 1SIJA 3NVZC 3NVWC 1VDVA 3L4PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NVY C;  4ZOH A;  1N5W B;  4USA A;  1VLB A;  1WYG A;  2W54 B;  3AMZ A;  3ETR C;  4C7Z A;  1ZXI B;  3HRD A;  1N61 B;  1FO4 A;  3EUB 4;  1FIQ C;  3NS1 C;  1N60 B;  3FAH A;  3NVV C;  3SR6 C;  2W3S B;  2W3R B;  4US9 A;  1V97 A;  1FFU B;  1DGJ A;  3FC4 A;  1JRO B;  3AM9 A;  1SB3 A;  3NRZ C;  3AN1 A;  3B9J C;  1JRP B;  4C80 A;  1N62 B;  4US8 A;  3HRD B;  1RM6 A;  1FFV B;  1N5X A;  2E3T A;  4C7Y A;  1N63 B;  2W55 B;  1SIJ A;  3NVZ C;  3NVW C;  1VDV A;  3L4P A; 
#chains in the Genus database with same CATH topology
 2ZJQ J;  5JVH J;  5HUO A;  1VLB A;  2W54 B;  1Y69 K;  3AMZ A;  3ETR C;  5GAD N;  4WF9 J;  1K9M J;  1YTK A;  3CCE H;  3SR6 C;  3CC4 H;  4XR5 A;  2TPT A;  3PIO J;  4AP8 A;  1Q81 J;  4GA5 A;  3C2E A;  4X46 A;  3NRZ C;  1OTP A;  2WP4 A;  4EAD A;  1JRP B;  1N62 B;  1RM6 A;  1YI2 H;  2I14 A;  3CMA H;  2JBM A;  1N5X A;  2E3T A;  4C7Y A;  3PAJ A;  3CXC H;  3L0G A;  3CCU H;  1SIJ A;  1YJW H;  4WCE J;  4UY8 M;  2B7N A;  3L4P A;  3NVY C;  5EP8 A;  2J0F A;  1WKI A;  5HUP A;  3TQV A;  4USA A;  1FM0 E;  2WK6 A;  3C2R A;  1NJI J;  2Q5W E;  1K73 J;  2DSJ A;  1FO4 A;  2QA4 H;  1QAP A;  5EY3 A;  3NS1 C;  3RPF A;  3PIP J;  3CCS H;  1W2B H;  4EAF A;  1KC8 J;  3WO1 A;  1NVI E;  1DGJ A;  1QPR A;  1VQL H;  4IOA J;  1M1K J;  3CC7 H;  4I9A A;  1Q86 J;  2ZJR J;  1FFV B;  4WFB J;  3C2V A;  5AYY A;  1FMA E;  1YJN H;  1Q7Y J;  2ZJP J;  1VQ7 H;  1QPQ A;  2OTJ H;  1N63 B;  2W55 B;  3I56 H;  3CCL H;  3NVW C;  3C2F A;  5GAH N;  1VDV A;  2WK5 A;  4YEK A;  4ZOH A;  1VQO H;  1M90 J;  1T3Q B;  5GAG N;  1VQ9 H;  5H1S O;  4C7Z A;  1ZXI B;  1YIT H;  2OTL H;  5HUL A;  1YJ9 H;  5HL7 J;  1FIQ C;  1VQ6 H;  1YTD A;  3CCR H;  4YYY A;  1N60 B;  3FAH A;  4U67 J;  2W3S B;  2W3R B;  4US9 A;  1V97 A;  3CCV H;  1YIJ H;  1FFU B;  3FC4 A;  3AM9 A;  1SB3 A;  3G6E H;  1O4U A;  3CCQ H;  1VQ4 H;  4KWW A;  3OW2 H;  1BRW A;  1QPN A;  4IO9 J;  1QVG H;  3J7Z M;  1VQN H;  1K8A J;  1VQ5 H;  4C80 A;  3DLL J;  4US8 A;  1NVJ A;  5DM6 J;  5GAE N;  1X1O A;  1QPO A;  2OMD A;  1UOU A;  3G71 H;  1KD1 J;  5DM7 J;  2B7Q A;  4LHM A;  5AYX A;  5MPO C;  4GA6 A;  3CF5 J;  1N5W B;  3G4S H;  1YHQ H;  1WYG A;  1S72 H;  1JJ2 H;  3VMM A;  2QIE A;  3HRD A;  1N61 B;  1VQ8 H;  3EUB 4;  3CPW H;  3NVV C;  3I55 H;  3BII E;  1Q82 J;  5AN9 F;  3WNZ A;  4WFA J;  2PA2 A;  1JRO B;  3CCJ H;  1YTE A;  5MLC O;  3CCM H;  2B7P A;  1VQK H;  3CME H;  3AN1 A;  3C2O A;  3H5Q A;  3B9J C;  4IOC J;  1AZY A;  4GA4 A;  3GNN A;  3HRD B;  1N8R J;  3CD6 H;  2QEX H;  1QVF H;  2I1O A;  1VQP H;  4WFN J;  1VQM H;  1KQS H;  3NVZ C;  5JVG J;  3CC2 H;  3WO0 A;  5AYZ A;  4KWV A; 
#chains in the Genus database with same CATH homology
 3NVY C;  4ZOH A;  1N5W B;  4USA A;  1VLB A;  1WYG A;  2W54 B;  3AMZ A;  3ETR C;  4C7Z A;  1ZXI B;  3HRD A;  1N61 B;  1FO4 A;  3EUB 4;  1FIQ C;  3NS1 C;  1N60 B;  3FAH A;  3NVV C;  3SR6 C;  2W3S B;  2W3R B;  4US9 A;  1V97 A;  1FFU B;  1DGJ A;  3FC4 A;  1JRO B;  3AM9 A;  1SB3 A;  3NRZ C;  3AN1 A;  3B9J C;  1JRP B;  4C80 A;  1N62 B;  4US8 A;  3HRD B;  1RM6 A;  1FFV B;  1N5X A;  2E3T A;  4C7Y A;  1N63 B;  2W55 B;  1SIJ A;  3NVZ C;  3NVW C;  1VDV A;  3L4P A; 
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