1NDBA

Crystal structure of carnitine acetyltransferase
Total Genus 198
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
198
sequence length
596
structure length
596
Chain Sequence
AHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSMIDNETLPVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRPPTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASIDSLAFVKGMGDSTVPEQQKVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVMFFGPVVPDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNHPRAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal Structure of Carnitine Acetyltransferase and Implications for the Catalytic Mechanism and Fatty Acid Transport
pubmed doi rcsb
molecule tags Transferase
source organism Mus musculus
molecule keywords Carnitine Acetyltransferase
total genus 198
structure length 596
sequence length 596
chains with identical sequence B
ec nomenclature ec 2.3.1.7: Carnitine O-acetyltransferase.
pdb deposition date 2002-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1ndbA01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1ndbA02
2FY5A 1NDIA 1Q6XA 2RCUA 1T7QA 2FY2A 2H3UA 1NDBA 2DEBA 1T7NA 2H3WA 2FYOA 1T7OA 2FW3A 4EYWA 2FY4A 1S5OA 2H4TA 4EPHA 1NM8A 4EP9A 1NDFA 2H3PA 2FY3A 1T1UA
chains in the Genus database with same CATH superfamily
3U9BA 2I9DA 1SCZA 5KJUA 2H3UA 2DEBA 1Q23A 4KE4A 1EAEA 1T7OA 2II3A 1QCAA 4G2MA 2FW3A 5KJTA 5FANA 2E1VA 3MAEA 4EPHA 5DU9A 3CLAA 1NDFA 2E1UA 2H3PA 1T1UA 3U9FA 1T7QA 1XMDA 2II4A 2RKVA 1C4TA 3B30A 3FP0A 5KJSA 2VSQA 2FY4A 2ZBAA 4EP9A 4KECA 1CLAA 1DPCA 4JN5A 2FY3A 1XMCA 2CLAA 5FALA 1NDIA 4JN3A 2XR7A 1NDBA 2JGPA 2IHWA 1Q9JA 5KJWA 4HVMA 1EAAA 1T7NA 2XHGA 4CLAA 5KJVA 1CIAA 2FYOA 4G22A 1EADA 1PD5A 1EACA 5DUAA 1E2OA 1XL8A 2FY5A 1Q6XA 1XL7A 2RCUA 2FY2A 3FOTA 1EABA 2E1TA 3L60A 1EAFA 1DPBA 1DPDA 2H3WA 2RKTA 3B2SA 5T3EA 4G0BA 2II5A 1L5AA 4EYWA 1S5OA 1NOCB 2H4TA 4N72A 1NM8A 2BGHA
chains in the Genus database with same CATH topology
2FY5A 1NDIA 1Q6XA 2RCUA 4JN3A 1T7QA 2FY2A 3FOTA 2H3UA 1NDBA 2DEBA 2JGPA 1Q9JA 4HVMA 1T7NA 2XHGA 2H3WA 3FP0A 5T3EA 2FYOA 1T7OA 2VSQA 1L5AA 2FW3A 4EYWA 2FY4A 1S5OA 2H4TA 4EPHA 1NM8A 4EP9A 5DU9A 5DUAA 1NDFA 2H3PA 4JN5A 2FY3A 1T1UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FY5 A;  1NDI A;  1Q6X A;  2RCU A;  1T7Q A;  2FY2 A;  2H3U A;  1NDB A;  2DEB A;  1T7N A;  2H3W A;  2FYO A;  1T7O A;  2FW3 A;  4EYW A;  2FY4 A;  1S5O A;  2H4T A;  4EPH A;  1NM8 A;  4EP9 A;  1NDF A;  2H3P A;  2FY3 A;  1T1U A; 
#chains in the Genus database with same CATH topology
 3U9B A;  2I9D A;  1SCZ A;  5KJU A;  2H3U A;  2DEB A;  1Q23 A;  4KE4 A;  1EAE A;  1T7O A;  2II3 A;  1QCA A;  4G2M A;  2FW3 A;  5KJT A;  5FAN A;  2E1V A;  3MAE A;  4EPH A;  5DU9 A;  3CLA A;  1NDF A;  2E1U A;  2H3P A;  1T1U A;  3U9F A;  1T7Q A;  1XMD A;  2II4 A;  2RKV A;  1C4T A;  3B30 A;  3FP0 A;  5KJS A;  2VSQ A;  2FY4 A;  2ZBA A;  4EP9 A;  4KEC A;  1CLA A;  1DPC A;  4JN5 A;  2FY3 A;  1XMC A;  2CLA A;  5FAL A;  1NDI A;  4JN3 A;  2XR7 A;  1NDB A;  2JGP A;  2IHW A;  1Q9J A;  5KJW A;  4HVM A;  1EAA A;  1T7N A;  2XHG A;  4CLA A;  5KJV A;  1CIA A;  2FYO A;  4G22 A;  1EAD A;  1PD5 A;  1EAC A;  5DUA A;  1E2O A;  1XL8 A;  2FY5 A;  1Q6X A;  1XL7 A;  2RCU A;  2FY2 A;  3FOT A;  1EAB A;  2E1T A;  3L60 A;  1EAF A;  1DPB A;  1DPD A;  2H3W A;  2RKT A;  3B2S A;  5T3E A;  4G0B A;  2II5 A;  1L5A A;  4EYW A;  1S5O A;  1NOC B;  2H4T A;  4N72 A;  1NM8 A;  2BGH A; 
#chains in the Genus database with same CATH homology
 2FY5 A;  1NDI A;  1Q6X A;  2RCU A;  4JN3 A;  1T7Q A;  2FY2 A;  3FOT A;  2H3U A;  1NDB A;  2DEB A;  2JGP A;  1Q9J A;  4HVM A;  1T7N A;  2XHG A;  2H3W A;  3FP0 A;  5T3E A;  2FYO A;  1T7O A;  2VSQ A;  1L5A A;  2FW3 A;  4EYW A;  2FY4 A;  1S5O A;  2H4T A;  4EPH A;  1NM8 A;  4EP9 A;  5DU9 A;  5DUA A;  1NDF A;  2H3P A;  4JN5 A;  2FY3 A;  1T1U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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