1NDBA

Crystal structure of carnitine acetyltransferase
Total Genus 198
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
198
sequence length
596
structure length
596
Chain Sequence
AHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSMIDNETLPVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRPPTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASIDSLAFVKGMGDSTVPEQQKVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVMFFGPVVPDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNHPRAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal Structure of Carnitine Acetyltransferase and Implications for the Catalytic Mechanism and Fatty Acid Transport
pubmed doi rcsb
molecule tags Transferase
source organism Mus musculus
molecule keywords Carnitine Acetyltransferase
total genus 198
structure length 596
sequence length 596
chains with identical sequence B
ec nomenclature ec 2.3.1.7: Carnitine O-acetyltransferase.
pdb deposition date 2002-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1ndbA01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1ndbA02
2FY3A 1Q6XA 2H3WA 2RCUA 2DEBA 1T7NA 2FY5A 1NDIA 4EYWA 4EP9A 2H3PA 2FY2A 1T7OA 2FW3A 2H4TA 1T7QA 1S5OA 2FYOA 2H3UA 1NDFA 1NDBA 4EPHA 1T1UA 2FY4A 1NM8A
chains in the Genus database with same CATH superfamily
1XL7A 2RCUA 5DUAA 2FY5A 5T3EA 4EYWA 4KE4A 1CLAA 4G0BA 2RKTA 2FYOA 2H3UA 2XHGA 1NDFA 2VSQA 3FP0A 1SCZA 2BGHA 1NM8A 1EAAA 2FY3A 1T7NA 1NDIA 2I9DA 4JN3A 1QCAA 2II4A 4KECA 5KJUA 1PD5A 2ZBAA 1E2OA 1T7OA 2FW3A 2H4TA 1T7QA 1C4TA 1DPCA 1EADA 2XR7A 1EAFA 5FALA 1XMDA 3U9BA 2E1TA 2II5A 3L60A 2FY4A 1EACA 3CLAA 1Q9JA 2CLAA 1EAEA 3U9FA 1DPDA 5KJSA 2H3PA 1EABA 2II3A 4JN5A 3B30A 1XL8A 1Q23A 1DPBA 5FANA 4G22A 4HVMA 3B2SA 1Q6XA 2RKVA 2H3WA 2E1UA 4CLAA 2DEBA 4G2MA 1NOCB 2JGPA 2IHWA 5KJVA 4EP9A 3MAEA 5DU9A 1L5AA 4N72A 2FY2A 1XMCA 1S5OA 1NDBA 4EPHA 5KJTA 1CIAA 3FOTA 1T1UA 5KJWA 2E1VA
chains in the Genus database with same CATH topology
2FY3A 1Q6XA 1Q9JA 2H3WA 2RCUA 2DEBA 1T7NA 5DUAA 2FY5A 1NDIA 5T3EA 4JN3A 4EYWA 2JGPA 4EP9A 5DU9A 2H3PA 1L5AA 2FY2A 4JN5A 1T7OA 2FW3A 2H4TA 1T7QA 1S5OA 2FYOA 2H3UA 2XHGA 1NDFA 2VSQA 3FP0A 1NDBA 4EPHA 4HVMA 3FOTA 1T1UA 2FY4A 1NM8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FY3 A;  1Q6X A;  2H3W A;  2RCU A;  2DEB A;  1T7N A;  2FY5 A;  1NDI A;  4EYW A;  4EP9 A;  2H3P A;  2FY2 A;  1T7O A;  2FW3 A;  2H4T A;  1T7Q A;  1S5O A;  2FYO A;  2H3U A;  1NDF A;  1NDB A;  4EPH A;  1T1U A;  2FY4 A;  1NM8 A; 
#chains in the Genus database with same CATH topology
 1XL7 A;  2RCU A;  5DUA A;  2FY5 A;  5T3E A;  4EYW A;  4KE4 A;  1CLA A;  4G0B A;  2RKT A;  2FYO A;  2H3U A;  2XHG A;  1NDF A;  2VSQ A;  3FP0 A;  1SCZ A;  2BGH A;  1NM8 A;  1EAA A;  2FY3 A;  1T7N A;  1NDI A;  2I9D A;  4JN3 A;  1QCA A;  2II4 A;  4KEC A;  5KJU A;  1PD5 A;  2ZBA A;  1E2O A;  1T7O A;  2FW3 A;  2H4T A;  1T7Q A;  1C4T A;  1DPC A;  1EAD A;  2XR7 A;  1EAF A;  5FAL A;  1XMD A;  3U9B A;  2E1T A;  2II5 A;  3L60 A;  2FY4 A;  1EAC A;  3CLA A;  1Q9J A;  2CLA A;  1EAE A;  3U9F A;  1DPD A;  5KJS A;  2H3P A;  1EAB A;  2II3 A;  4JN5 A;  3B30 A;  1XL8 A;  1Q23 A;  1DPB A;  5FAN A;  4G22 A;  4HVM A;  3B2S A;  1Q6X A;  2RKV A;  2H3W A;  2E1U A;  4CLA A;  2DEB A;  4G2M A;  1NOC B;  2JGP A;  2IHW A;  5KJV A;  4EP9 A;  3MAE A;  5DU9 A;  1L5A A;  4N72 A;  2FY2 A;  1XMC A;  1S5O A;  1NDB A;  4EPH A;  5KJT A;  1CIA A;  3FOT A;  1T1U A;  5KJW A;  2E1V A; 
#chains in the Genus database with same CATH homology
 2FY3 A;  1Q6X A;  1Q9J A;  2H3W A;  2RCU A;  2DEB A;  1T7N A;  5DUA A;  2FY5 A;  1NDI A;  5T3E A;  4JN3 A;  4EYW A;  2JGP A;  4EP9 A;  5DU9 A;  2H3P A;  1L5A A;  2FY2 A;  4JN5 A;  1T7O A;  2FW3 A;  2H4T A;  1T7Q A;  1S5O A;  2FYO A;  2H3U A;  2XHG A;  1NDF A;  2VSQ A;  3FP0 A;  1NDB A;  4EPH A;  4HVM A;  3FOT A;  1T1U A;  2FY4 A;  1NM8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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