1Q9JA

Structure of polyketide synthase associated protein 5 from mycobacterium tuberculosis
Total Genus 105
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
418
structure length
388
Chain Sequence
MFPGSVIRKLSHSEEVFAQYEVFTSMTIQLRGVIDVDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDLLHSGICVIDAELRLDQSVSLLHLQLILREGGAELTLYLHHCMADGHHGAVLVDELFSRYTDAVTTGDPGPITPQPTPLSMEAVLAQRGIRKAERFMSVMYAYPGLPQAVPVTRLWLSKQQTSDLMAFGREHRLSLNAVVAAAILLTEWQLRNTPHVPIPYVYPVDLRFVLAPPVAPTEATNLLGAASYLAEIGPNTDIVDLASDIVATLRADLANGVIQQSGLHFGTAFEGTPPGLPPLVFCTDATSFPTMRTPPGLEIEDIKGQFYCSISVPLDLYSCAVYAGQLIIEHHGHIAEPGKSLEAIRSLLCTVPSEYG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of PapA5, a Phthiocerol Dimycocerosyl Transferase from Mycobacterium tuberculosis
pubmed doi rcsb
molecule tags Ligase
source organism Mycobacterium tuberculosis
molecule keywords Polyketide synthase associated protein 5
total genus 105
structure length 388
sequence length 418
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16911 PapA_C Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1q9jA01
3.30.559.30 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1q9jA02
3B30A 1XL8A 4HVMA 5KJUA 5T3EA 2XHGA 3FP0A 1C4TA 1E2OA 5DU9A 5KJSA 2CLAA 4JN5A 4CLAA 2BGHA 4G0BA 4KE4A 1EACA 2E1VA 2II4A 1EAEA 1XMDA 1QCAA 5FANA 1CIAA 3L60A 2VSQA 3B2SA 4G2MA 4N72A 1XMCA 1SCZA 3U9BA 1NOCB 1Q23A 1XL7A 2IHWA 3FOTA 1EADA 2RKVA 4KECA 2I9DA 1EAAA 1DPDA 2RKTA 2XR7A 1EAFA 1PD5A 2E1TA 2II5A 2ZBAA 5KJWA 1DPCA 1Q9JA 3MAEA 5KJVA 3CLAA 5KJTA 1DPBA 2E1UA 3U9FA 4JN3A 2II3A 2JGPA 5DUAA 1EABA 4G22A 1L5AA 1CLAA 5FALA
chains in the Genus database with same CATH superfamily
1XL8A 1T7NA 5T3EA 2CLAA 4CLAA 1EACA 5FANA 1XMDA 1CIAA 3U9BA 1Q23A 3FOTA 2IHWA 2RKVA 1NDIA 1EAAA 2XR7A 1T7QA 3U9FA 1T7OA 1L5AA 5FALA 3B30A 2H3PA 1C4TA 1E2OA 4EPHA 2FYOA 1EAEA 2II4A 3L60A 2VSQA 4G2MA 1XMCA 1XL7A 4KECA 1EADA 1EAFA 2II5A 1DPCA 1DPBA 2E1UA 5KJUA 1NDFA 2XHGA 3FP0A 4EYWA 4JN5A 2FW3A 2H3UA 2E1VA 1QCAA 4N72A 3B2SA 1SCZA 1T1UA 2ZBAA 2E1TA 5KJVA 2FY5A 4EP9A 1S5OA 3CLAA 5KJTA 2JGPA 5DUAA 1EABA 2H3WA 1CLAA 2FY3A 4HVMA 5DU9A 5KJSA 1NM8A 1Q6XA 2BGHA 4G0BA 4KE4A 2FY4A 2DEBA 1NOCB 2RCUA 2I9DA 2RKTA 1DPDA 5KJWA 1PD5A 1Q9JA 3MAEA 2H4TA 1NDBA 4JN3A 2II3A 2FY2A 4G22A
chains in the Genus database with same CATH topology
1XL8A 1T7NA 5T3EA 2CLAA 4CLAA 1EACA 5FANA 1XMDA 1CIAA 3U9BA 1Q23A 3FOTA 2IHWA 2RKVA 1NDIA 1EAAA 2XR7A 1T7QA 3U9FA 1L5AA 1T7OA 5FALA 3B30A 2H3PA 1C4TA 1E2OA 4EPHA 2II4A 1EAEA 2FYOA 3L60A 2VSQA 4G2MA 1XMCA 1XL7A 4KECA 1EADA 1EAFA 2II5A 1DPCA 1DPBA 2E1UA 5KJUA 1NDFA 2XHGA 3FP0A 4EYWA 4JN5A 2FW3A 2H3UA 2E1VA 1QCAA 4N72A 3B2SA 1SCZA 1T1UA 2ZBAA 2E1TA 5KJVA 2FY5A 4EP9A 3CLAA 1S5OA 5KJTA 2JGPA 5DUAA 1EABA 1CLAA 2H3WA 4HVMA 2FY3A 5DU9A 5KJSA 1NM8A 1Q6XA 2BGHA 4G0BA 4KE4A 2FY4A 2DEBA 1NOCB 2RCUA 2I9DA 2RKTA 1DPDA 5KJWA 1PD5A 1Q9JA 3MAEA 2H4TA 1NDBA 4JN3A 2II3A 2FY2A 4G22A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B30 A;  1XL8 A;  4HVM A;  5KJU A;  5T3E A;  2XHG A;  3FP0 A;  1C4T A;  1E2O A;  5DU9 A;  5KJS A;  2CLA A;  4JN5 A;  4CLA A;  2BGH A;  4G0B A;  4KE4 A;  1EAC A;  2E1V A;  2II4 A;  1EAE A;  1XMD A;  1QCA A;  5FAN A;  1CIA A;  3L60 A;  2VSQ A;  3B2S A;  4G2M A;  4N72 A;  1XMC A;  1SCZ A;  3U9B A;  1NOC B;  1Q23 A;  1XL7 A;  2IHW A;  3FOT A;  1EAD A;  2RKV A;  4KEC A;  2I9D A;  1EAA A;  1DPD A;  2RKT A;  2XR7 A;  1EAF A;  1PD5 A;  2E1T A;  2II5 A;  2ZBA A;  5KJW A;  1DPC A;  1Q9J A;  3MAE A;  5KJV A;  3CLA A;  5KJT A;  1DPB A;  2E1U A;  3U9F A;  4JN3 A;  2II3 A;  2JGP A;  5DUA A;  1EAB A;  4G22 A;  1L5A A;  1CLA A;  5FAL A; 
#chains in the Genus database with same CATH topology
 1XL8 A;  1T7N A;  5T3E A;  2CLA A;  4CLA A;  1EAC A;  5FAN A;  1XMD A;  1CIA A;  3U9B A;  1Q23 A;  3FOT A;  2IHW A;  2RKV A;  1NDI A;  1EAA A;  2XR7 A;  1T7Q A;  3U9F A;  1T7O A;  1L5A A;  5FAL A;  3B30 A;  2H3P A;  1C4T A;  1E2O A;  4EPH A;  2FYO A;  1EAE A;  2II4 A;  3L60 A;  2VSQ A;  4G2M A;  1XMC A;  1XL7 A;  4KEC A;  1EAD A;  1EAF A;  2II5 A;  1DPC A;  1DPB A;  2E1U A;  5KJU A;  1NDF A;  2XHG A;  3FP0 A;  4EYW A;  4JN5 A;  2FW3 A;  2H3U A;  2E1V A;  1QCA A;  4N72 A;  3B2S A;  1SCZ A;  1T1U A;  2ZBA A;  2E1T A;  5KJV A;  2FY5 A;  4EP9 A;  1S5O A;  3CLA A;  5KJT A;  2JGP A;  5DUA A;  1EAB A;  2H3W A;  1CLA A;  2FY3 A;  4HVM A;  5DU9 A;  5KJS A;  1NM8 A;  1Q6X A;  2BGH A;  4G0B A;  4KE4 A;  2FY4 A;  2DEB A;  1NOC B;  2RCU A;  2I9D A;  2RKT A;  1DPD A;  5KJW A;  1PD5 A;  1Q9J A;  3MAE A;  2H4T A;  1NDB A;  4JN3 A;  2II3 A;  2FY2 A;  4G22 A; 
#chains in the Genus database with same CATH homology
 1XL8 A;  1T7N A;  5T3E A;  2CLA A;  4CLA A;  1EAC A;  5FAN A;  1XMD A;  1CIA A;  3U9B A;  1Q23 A;  3FOT A;  2IHW A;  2RKV A;  1NDI A;  1EAA A;  2XR7 A;  1T7Q A;  3U9F A;  1L5A A;  1T7O A;  5FAL A;  3B30 A;  2H3P A;  1C4T A;  1E2O A;  4EPH A;  2II4 A;  1EAE A;  2FYO A;  3L60 A;  2VSQ A;  4G2M A;  1XMC A;  1XL7 A;  4KEC A;  1EAD A;  1EAF A;  2II5 A;  1DPC A;  1DPB A;  2E1U A;  5KJU A;  1NDF A;  2XHG A;  3FP0 A;  4EYW A;  4JN5 A;  2FW3 A;  2H3U A;  2E1V A;  1QCA A;  4N72 A;  3B2S A;  1SCZ A;  1T1U A;  2ZBA A;  2E1T A;  5KJV A;  2FY5 A;  4EP9 A;  3CLA A;  1S5O A;  5KJT A;  2JGP A;  5DUA A;  1EAB A;  1CLA A;  2H3W A;  4HVM A;  2FY3 A;  5DU9 A;  5KJS A;  1NM8 A;  1Q6X A;  2BGH A;  4G0B A;  4KE4 A;  2FY4 A;  2DEB A;  1NOC B;  2RCU A;  2I9D A;  2RKT A;  1DPD A;  5KJW A;  1PD5 A;  1Q9J A;  3MAE A;  2H4T A;  1NDB A;  4JN3 A;  2II3 A;  2FY2 A;  4G22 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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