1Q9JA

Structure of polyketide synthase associated protein 5 from mycobacterium tuberculosis
Total Genus 105
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
418
structure length
388
Chain Sequence
MFPGSVIRKLSHSEEVFAQYEVFTSMTIQLRGVIDVDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDLLHSGICVIDAELRLDQSVSLLHLQLILREGGAELTLYLHHCMADGHHGAVLVDELFSRYTDAVTTGDPGPITPQPTPLSMEAVLAQRGIRKAERFMSVMYAYPGLPQAVPVTRLWLSKQQTSDLMAFGREHRLSLNAVVAAAILLTEWQLRNTPHVPIPYVYPVDLRFVLAPPVAPTEATNLLGAASYLAEIGPNTDIVDLASDIVATLRADLANGVIQQSGLHFGTAFEGTPPGLPPLVFCTDATSFPTMRTPPGLEIEDIKGQFYCSISVPLDLYSCAVYAGQLIIEHHGHIAEPGKSLEAIRSLLCTVPSEYG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of PapA5, a Phthiocerol Dimycocerosyl Transferase from Mycobacterium tuberculosis
pubmed doi rcsb
molecule tags Ligase
source organism Mycobacterium tuberculosis
molecule keywords Polyketide synthase associated protein 5
total genus 105
structure length 388
sequence length 418
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16911 PapA_C Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1q9jA01
3.30.559.30 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1q9jA02
1C4TA 2XR7A 2RKVA 4G2MA 2E1VA 1E2OA 1DPBA 2II4A 4G22A 1CIAA 1EACA 1EABA 2RKTA 4G0BA 5DU9A 2XHGA 2JGPA 1XL8A 5KJWA 4N72A 1XMCA 4KE4A 1NOCB 2ZBAA 1QCAA 2E1TA 3B30A 1DPDA 1Q9JA 1PD5A 1XL7A 1XMDA 2VSQA 3FOTA 3U9BA 1CLAA 1Q23A 2I9DA 3U9FA 2BGHA 4HVMA 2II5A 3FP0A 3B2SA 2CLAA 3L60A 1L5AA 5KJUA 5KJSA 1DPCA 1EAAA 5KJVA 4KECA 1EADA 4CLAA 5KJTA 1EAEA 1SCZA 3CLAA 4JN5A 2IHWA 5DUAA 5T3EA 5FALA 5FANA 1EAFA 3MAEA 2II3A 4JN3A 2E1UA
chains in the Genus database with same CATH superfamily
2XR7A 2E1VA 1E2OA 2H3UA 1CIAA 1EABA 2JGPA 1XMDA 2H3WA 1S5OA 1CLAA 2FY2A 4EPHA 4HVMA 3B2SA 5KJSA 1DPCA 2H3PA 1SCZA 2FW3A 2FY4A 3CLAA 5T3EA 2IHWA 5FANA 2FY5A 2E1UA 1C4TA 2RCUA 5DU9A 4G22A 1T7OA 1XL8A 1XMCA 4KE4A 3B30A 2ZBAA 1DPDA 1Q9JA 3U9BA 1Q23A 2I9DA 2II5A 2H4TA 1EAAA 1T1UA 1EAEA 4JN5A 5DUAA 3MAEA 2II3A 1NM8A 2RKVA 4G2MA 1NDIA 2II4A 2RKTA 4N72A 1NOCB 1XL7A 1PD5A 1L5AA 3L60A 5KJUA 2DEBA 1EAFA 1T7QA 4JN3A 5KJWA 1T7NA 4EP9A 1DPBA 1EACA 4G0BA 2XHGA 1NDBA 1QCAA 2E1TA 3FOTA 2FYOA 3U9FA 2BGHA 3FP0A 2CLAA 5KJVA 2FY3A 1NDFA 4KECA 4EYWA 1EADA 4CLAA 5KJTA 1Q6XA 5FALA 2VSQA
chains in the Genus database with same CATH topology
2XR7A 2E1VA 1E2OA 2H3UA 1CIAA 1EABA 2JGPA 1XMDA 2H3WA 1S5OA 1CLAA 2FY2A 4EPHA 4HVMA 3B2SA 5KJSA 1DPCA 2H3PA 1SCZA 2FW3A 2FY4A 3CLAA 5T3EA 2IHWA 5FANA 2FY5A 2E1UA 1C4TA 2RCUA 5DU9A 4G22A 1T7OA 1XL8A 1XMCA 4KE4A 3B30A 2ZBAA 1DPDA 1Q9JA 3U9BA 1Q23A 2I9DA 2II5A 2H4TA 1EAAA 1T1UA 1EAEA 4JN5A 5DUAA 3MAEA 2II3A 1NM8A 2RKVA 4G2MA 1NDIA 2II4A 2RKTA 4N72A 1NOCB 1XL7A 1PD5A 1L5AA 3L60A 5KJUA 2DEBA 1EAFA 1T7QA 4JN3A 5KJWA 1T7NA 4EP9A 1DPBA 1EACA 4G0BA 2XHGA 1NDBA 1QCAA 2E1TA 3FOTA 2FYOA 3U9FA 2BGHA 3FP0A 2CLAA 5KJVA 2FY3A 1NDFA 4KECA 4EYWA 1EADA 4CLAA 5KJTA 1Q6XA 5FALA 2VSQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1C4T A;  2XR7 A;  2RKV A;  4G2M A;  2E1V A;  1E2O A;  1DPB A;  2II4 A;  4G22 A;  1CIA A;  1EAC A;  1EAB A;  2RKT A;  4G0B A;  5DU9 A;  2XHG A;  2JGP A;  1XL8 A;  5KJW A;  4N72 A;  1XMC A;  4KE4 A;  1NOC B;  2ZBA A;  1QCA A;  2E1T A;  3B30 A;  1DPD A;  1Q9J A;  1PD5 A;  1XL7 A;  1XMD A;  2VSQ A;  3FOT A;  3U9B A;  1CLA A;  1Q23 A;  2I9D A;  3U9F A;  2BGH A;  4HVM A;  2II5 A;  3FP0 A;  3B2S A;  2CLA A;  3L60 A;  1L5A A;  5KJU A;  5KJS A;  1DPC A;  1EAA A;  5KJV A;  4KEC A;  1EAD A;  4CLA A;  5KJT A;  1EAE A;  1SCZ A;  3CLA A;  4JN5 A;  2IHW A;  5DUA A;  5T3E A;  5FAL A;  5FAN A;  1EAF A;  3MAE A;  2II3 A;  4JN3 A;  2E1U A; 
#chains in the Genus database with same CATH topology
 2XR7 A;  2E1V A;  1E2O A;  2H3U A;  1CIA A;  1EAB A;  2JGP A;  1XMD A;  2H3W A;  1S5O A;  1CLA A;  2FY2 A;  4EPH A;  4HVM A;  3B2S A;  5KJS A;  1DPC A;  2H3P A;  1SCZ A;  2FW3 A;  2FY4 A;  3CLA A;  5T3E A;  2IHW A;  5FAN A;  2FY5 A;  2E1U A;  1C4T A;  2RCU A;  5DU9 A;  4G22 A;  1T7O A;  1XL8 A;  1XMC A;  4KE4 A;  3B30 A;  2ZBA A;  1DPD A;  1Q9J A;  3U9B A;  1Q23 A;  2I9D A;  2II5 A;  2H4T A;  1EAA A;  1T1U A;  1EAE A;  4JN5 A;  5DUA A;  3MAE A;  2II3 A;  1NM8 A;  2RKV A;  4G2M A;  1NDI A;  2II4 A;  2RKT A;  4N72 A;  1NOC B;  1XL7 A;  1PD5 A;  1L5A A;  3L60 A;  5KJU A;  2DEB A;  1EAF A;  1T7Q A;  4JN3 A;  5KJW A;  1T7N A;  4EP9 A;  1DPB A;  1EAC A;  4G0B A;  2XHG A;  1NDB A;  1QCA A;  2E1T A;  3FOT A;  2FYO A;  3U9F A;  2BGH A;  3FP0 A;  2CLA A;  5KJV A;  2FY3 A;  1NDF A;  4KEC A;  4EYW A;  1EAD A;  4CLA A;  5KJT A;  1Q6X A;  5FAL A;  2VSQ A; 
#chains in the Genus database with same CATH homology
 2XR7 A;  2E1V A;  1E2O A;  2H3U A;  1CIA A;  1EAB A;  2JGP A;  1XMD A;  2H3W A;  1S5O A;  1CLA A;  2FY2 A;  4EPH A;  4HVM A;  3B2S A;  5KJS A;  1DPC A;  2H3P A;  1SCZ A;  2FW3 A;  2FY4 A;  3CLA A;  5T3E A;  2IHW A;  5FAN A;  2FY5 A;  2E1U A;  1C4T A;  2RCU A;  5DU9 A;  4G22 A;  1T7O A;  1XL8 A;  1XMC A;  4KE4 A;  3B30 A;  2ZBA A;  1DPD A;  1Q9J A;  3U9B A;  1Q23 A;  2I9D A;  2II5 A;  2H4T A;  1EAA A;  1T1U A;  1EAE A;  4JN5 A;  5DUA A;  3MAE A;  2II3 A;  1NM8 A;  2RKV A;  4G2M A;  1NDI A;  2II4 A;  2RKT A;  4N72 A;  1NOC B;  1XL7 A;  1PD5 A;  1L5A A;  3L60 A;  5KJU A;  2DEB A;  1EAF A;  1T7Q A;  4JN3 A;  5KJW A;  1T7N A;  4EP9 A;  1DPB A;  1EAC A;  4G0B A;  2XHG A;  1NDB A;  1QCA A;  2E1T A;  3FOT A;  2FYO A;  3U9F A;  2BGH A;  3FP0 A;  2CLA A;  5KJV A;  2FY3 A;  1NDF A;  4KEC A;  4EYW A;  1EAD A;  4CLA A;  5KJT A;  1Q6X A;  5FAL A;  2VSQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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