The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
273
|
sequence length |
804
|
structure length |
804
|
Chain Sequence |
TVEPTSAERAEKLQGMGCKRKRVEDIRFTQGKGNYVDDVKLPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLKPLNLHYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAMEPDAPLLREDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNSPPPNLEPGLEAVNYYDPPNMTYPFGAYFCIMDIDIDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETPKWETDYTVTPSPHHPIGAKGVGESPHVGGVPCFSNAVNDAYAFLNAGHIQMPHDAWRLWKVGEQLGLHV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural and functional reconstruction in situ of the [CuSMoO(2)] active site of carbon monoxide dehydrogenase from the carbon monoxide oxidizing eubacterium Oligotropha carboxidovorans
pubmed doi rcsb |
| molecule keywords |
Carbon monoxide dehydrogenase small chain
|
| molecule tags |
Oxidoreductase
|
| total genus |
273
|
| structure length |
804
|
| sequence length |
804
|
| chains with identical sequence |
E
|
| ec nomenclature |
ec
1.2.5.3: Aerobic carbon monoxide dehydrogenase. |
| pdb deposition date | 2005-06-08 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF01315 | Ald_Xan_dh_C | Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain |
| B | PF02738 | Ald_Xan_dh_C2 | Molybdopterin-binding domain of aldehyde dehydrogenase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Aldehyde Oxidoreductase; domain 4 | Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | ||
| Alpha Beta | 2-Layer Sandwich | Aldehyde Oxidoreductase; domain 4 | Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | ||
| Alpha Beta | 2-Layer Sandwich | Aldehyde Oxidoreductase; domain 4 | Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | ||
| Alpha Beta | 2-Layer Sandwich | Aldehyde Oxidoreductase; domain 4 | Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | ||
| Alpha Beta | Alpha-Beta Complex | Aldehyde Oxidoreductase; domain 3 | Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead |
#chains in the Genus database with same CATH superfamily 3NVV C; 2E3T A; 3NVW C; 2W54 B; 1N61 B; 3B9J C; 3FAH A; 1FFV B; 1V97 A; 1VDV A; 2W3S B; 3SR6 C; 3ETR C; 1ZXI B; 4C7Z A; 1FIQ C; 1N62 B; 4USA A; 2W55 B; 4C7Y A; 1N5X A; 1FFU B; 3HRD A; 2W3R B; 1JRP B; 3HRD B; 1N5W B; 1FO4 A; 3NVZ C; 3NS1 C; 1RM6 A; 1N63 B; 1JRO B; 1WYG A; 1SIJ A; 1SB3 A; 3AN1 A; 3L4P A; 1VLB A; 3AMZ A; 3FC4 A; 3NVY C; 4ZOH A; 4US9 A; 3NRZ C; 1N60 B; 4C80 A; 4US8 A; 1DGJ A; 3AM9 A; 3EUB 4; #chains in the Genus database with same CATH topology 1VQL H; 1Q86 J; 1KD1 J; 5HUP A; 1VQN H; 1W2B H; 1VQ6 H; 1JJ2 H; 1Q82 J; 2QIE A; 4IOA J; 3G71 H; 2W3S B; 1M1K J; 2B7P A; 4GA4 A; 1K8A J; 3ETR C; 1ZXI B; 1NVI E; 5HL7 J; 4WFB J; 1FIQ C; 1N62 B; 4USA A; 2I1O A; 4X46 A; 3WO1 A; 3CCQ H; 5GAG N; 1Q81 J; 1VQ8 H; 4KWV A; 1VQK H; 5AYZ A; 1FM0 E; 2JBM A; 1VQ7 H; 3CME H; 2W3R B; 2TPT A; 3C2F A; 5H1S O; 4EAD A; 3CCS H; 1QVF H; 4LHM A; 1Y69 K; 1JRO B; 1NJI J; 1VQ5 H; 2B7N A; 4IO9 J; 1YJ9 H; 4US9 A; 3NRZ C; 4UY8 M; 4C80 A; 3C2O A; 3CCV H; 5AN9 F; 3CD6 H; 1DGJ A; 2B7Q A; 1YHQ H; 3CCJ H; 5DM6 J; 3NVW C; 3C2R A; 5HUL A; 1BRW A; 1UOU A; 2OTL H; 3CF5 J; 3FAH A; 1FFV B; 1V97 A; 1QPQ A; 3CXC H; 1VQP H; 3BII E; 1AZY A; 4C7Z A; 3CCM H; 3PAJ A; 3I55 H; 5DM7 J; 2ZJP J; 2ZJR J; 5EY3 A; 5EP8 A; 1QVG H; 3HRD A; 2OMD A; 1FO4 A; 3CCL H; 1S72 H; 1OTP A; 4XR5 A; 3NVZ C; 3CCU H; 1RM6 A; 5MPO C; 1VQ4 H; 1YTE A; 4I9A A; 1SIJ A; 3AN1 A; 3WO0 A; 3J7Z M; 5JVG J; 3AMZ A; 3FC4 A; 3NVY C; 4ZOH A; 1N60 B; 1T3Q B; 4US8 A; 1YI2 H; 4IOC J; 4EAF A; 5GAE N; 2QA4 H; 3NVV C; 2W54 B; 1WKI A; 3CCE H; 4YEK A; 3RPF A; 4AP8 A; 1N61 B; 4KWW A; 1FMA E; 3L0G A; 3CMA H; 1X1O A; 5AYX A; 4GA5 A; 3WNZ A; 3CC4 H; 1VDV A; 5HUO A; 3SR6 C; 1KQS H; 3VMM A; 4WF9 J; 2ZJQ J; 4C7Y A; 5GAH N; 1YJN H; 1O4U A; 5JVH J; 2OTJ H; 3CC7 H; 1JRP B; 3HRD B; 2Q5W E; 1N5W B; 3I56 H; 1YIJ H; 3GNN A; 1N63 B; 1WYG A; 3L4P A; 3G6E H; 1YTK A; 3PIO J; 3C2E A; 3CCR H; 3H5Q A; 2PA2 A; 1YTD A; 2E3T A; 1K9M J; 4YYY A; 5AYY A; 2QEX H; 2J0F A; 5MLC O; 3B9J C; 1VQ9 H; 4WCE J; 1QAP A; 1YJW H; 2I14 A; 3PIP J; 2WK6 A; 3CC2 H; 4U67 J; 1VQM H; 1VQO H; 1QPN A; 3C2V A; 2W55 B; 2DSJ A; 1K73 J; 5GAD N; 1KC8 J; 1N5X A; 3TQV A; 1FFU B; 2WP4 A; 3OW2 H; 3CPW H; 1QPR A; 2WK5 A; 3NS1 C; 1QPO A; 3G4S H; 4GA6 A; 1YIT H; 1SB3 A; 1VLB A; 1Q7Y J; 3DLL J; 4WFN J; 1M90 J; 1NVJ A; 3AM9 A; 4WFA J; 3EUB 4; 1N8R J; #chains in the Genus database with same CATH homology 3NVV C; 2E3T A; 3NVW C; 2W54 B; 1N61 B; 3B9J C; 3FAH A; 1FFV B; 1V97 A; 1VDV A; 2W3S B; 3SR6 C; 3ETR C; 1ZXI B; 4C7Z A; 1FIQ C; 1N62 B; 4USA A; 2W55 B; 4C7Y A; 1N5X A; 1FFU B; 3HRD A; 2W3R B; 1JRP B; 3HRD B; 1N5W B; 1FO4 A; 3NVZ C; 3NS1 C; 1RM6 A; 1N63 B; 1JRO B; 1WYG A; 1SIJ A; 1SB3 A; 3AN1 A; 3L4P A; 1VLB A; 3AMZ A; 3FC4 A; 3NVY C; 4ZOH A; 4US9 A; 3NRZ C; 1N60 B; 4C80 A; 4US8 A; 1DGJ A; 3AM9 A; 3EUB 4;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
