The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
254
|
sequence length |
776
|
structure length |
760
|
Chain Sequence |
SVGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAVFTAADLPHDNDASPAPSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITYAPRPAILTLDQALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAALALPAEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPPEKKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYATPKLSWDRLRGQGRPFLYFAYGAAITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTEELVWDHCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQPNREETIFRSKAVGEPPFLLGISAFLALHDACAACGPHWPDLQAPATPEAVLAAVRRAEGRA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Mechanism of Substrate and Inhibitor Binding of Rhodobacter Capsulatus Xanthine Dehydrogenase.
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| source organism |
Rhodobacter capsulatus
|
| molecule keywords |
XANTHINE DEHYDROGENASE
|
| total genus |
254
|
| structure length |
760
|
| sequence length |
776
|
| chains with identical sequence |
D, F, H
|
| ec nomenclature |
ec
1.1.1.204: Transferred entry: 1.17.1.4. |
| pdb deposition date | 2008-11-14 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF01315 | Ald_Xan_dh_C | Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain |
| B | PF02738 | Ald_Xan_dh_C2 | Molybdopterin-binding domain of aldehyde dehydrogenase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Aldehyde Oxidoreductase; domain 4 | Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | ||
| Alpha Beta | 2-Layer Sandwich | Aldehyde Oxidoreductase; domain 4 | Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | ||
| Alpha Beta | 2-Layer Sandwich | Aldehyde Oxidoreductase; domain 4 | Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | ||
| Alpha Beta | 2-Layer Sandwich | Aldehyde Oxidoreductase; domain 4 | Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | ||
| Alpha Beta | Alpha-Beta Complex | Aldehyde Oxidoreductase; domain 3 | Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead |
#chains in the Genus database with same CATH superfamily 4USA A; 3B9J C; 1N63 B; 3NVZ C; 3NVV C; 3NVY C; 3HRD A; 1FFV B; 1JRO B; 1WYG A; 2W55 B; 1DGJ A; 3ETR C; 3HRD B; 1ZXI B; 1SIJ A; 3NVW C; 3AN1 A; 4ZOH A; 1FIQ C; 1N5X A; 1N60 B; 1JRP B; 1RM6 A; 1N62 B; 3AM9 A; 3EUB 4; 3SR6 C; 3AMZ A; 2W3R B; 2W3S B; 4C7Y A; 2E3T A; 3NRZ C; 3L4P A; 4US8 A; 1FFU B; 4C80 A; 3NS1 C; 1N5W B; 1SB3 A; 1N61 B; 3FC4 A; 1VLB A; 3FAH A; 4US9 A; 4C7Z A; 2W54 B; 1VDV A; 1FO4 A; 1V97 A; #chains in the Genus database with same CATH topology 4USA A; 2OMD A; 2JBM A; 1VQK H; 3CC4 H; 3CCM H; 1JJ2 H; 2B7Q A; 5GAE N; 2I14 A; 5MPO C; 1NJI J; 3CC2 H; 4I9A A; 3HRD B; 3NVW C; 1YJW H; 4WFN J; 4IOC J; 1Y69 K; 1Q82 J; 1M90 J; 2I1O A; 2Q5W E; 5GAG N; 1FIQ C; 1FMA E; 3AM9 A; 1JRP B; 3SR6 C; 3VMM A; 5DM6 J; 1VQM H; 2W3R B; 1VQ8 H; 3BII E; 2E3T A; 3NRZ C; 4AP8 A; 5HUP A; 4LHM A; 3G6E H; 4WCE J; 1SB3 A; 5AYX A; 5GAD N; 1N61 B; 3C2V A; 1VLB A; 1VQ5 H; 1VQ7 H; 5AYZ A; 2W54 B; 1FM0 E; 1S72 H; 4GA6 A; 1N63 B; 2WP4 A; 3CXC H; 3NVY C; 1VQ6 H; 1YTD A; 3PIP J; 1OTP A; 1T3Q B; 1DGJ A; 1SIJ A; 2TPT A; 1X1O A; 5AN9 F; 5MLC O; 4U67 J; 1WKI A; 1K8A J; 3CCV H; 2OTL H; 1N5X A; 3C2F A; 1N62 B; 5AYY A; 4WFB J; 5DM7 J; 3AMZ A; 3C2O A; 4IOA J; 2B7P A; 2WK5 A; 1KQS H; 1K73 J; 1FFU B; 1QPO A; 2ZJP J; 3G4S H; 1YJ9 H; 1K9M J; 2B7N A; 5EY3 A; 1N8R J; 4US9 A; 3CPW H; 3WO0 A; 2QA4 H; 3CCL H; 4UY8 M; 3B9J C; 4XR5 A; 3WO1 A; 3TQV A; 1AZY A; 1W2B H; 3CCQ H; 5H1S O; 1QVF H; 3I56 H; 1VQN H; 1QAP A; 1YI2 H; 1VQ9 H; 3ETR C; 2J0F A; 4GA5 A; 1ZXI B; 5HUL A; 5HUO A; 1QPR A; 4KWW A; 3CMA H; 3CCU H; 1YIT H; 1QVG H; 5EP8 A; 1N60 B; 4WF9 J; 3CF5 J; 2ZJQ J; 3WNZ A; 1Q81 J; 3DLL J; 4C7Y A; 4EAD A; 1VQP H; 1M1K J; 1VQL H; 3G71 H; 1BRW A; 1Q86 J; 4YEK A; 1N5W B; 3J7Z M; 3CCS H; 3CD6 H; 3GNN A; 1Q7Y J; 4GA4 A; 3CCJ H; 4WFA J; 3FAH A; 3CCR H; 1KC8 J; 1O4U A; 4C7Z A; 1VQO H; 1VDV A; 1FO4 A; 1V97 A; 3CC7 H; 3PIO J; 3NVZ C; 3NVV C; 3HRD A; 1FFV B; 1JRO B; 1YHQ H; 3L0G A; 1WYG A; 4YYY A; 2OTJ H; 2W55 B; 1QPN A; 3C2R A; 3AN1 A; 1YIJ H; 4ZOH A; 5JVH J; 3OW2 H; 3CME H; 3H5Q A; 4EAF A; 2QEX H; 1YTK A; 1RM6 A; 3EUB 4; 1UOU A; 2PA2 A; 3I55 H; 5JVG J; 2W3S B; 4KWV A; 2DSJ A; 3C2E A; 5GAH N; 1YJN H; 1VQ4 H; 3L4P A; 4US8 A; 4C80 A; 1KD1 J; 1NVI E; 5HL7 J; 3NS1 C; 4X46 A; 2WK6 A; 3CCE H; 3FC4 A; 3PAJ A; 1NVJ A; 2ZJR J; 1QPQ A; 4IO9 J; 1YTE A; 3RPF A; 2QIE A; #chains in the Genus database with same CATH homology 4USA A; 3B9J C; 1N63 B; 3NVZ C; 3NVV C; 3NVY C; 3HRD A; 1FFV B; 1JRO B; 1WYG A; 2W55 B; 1DGJ A; 3ETR C; 3HRD B; 1ZXI B; 1SIJ A; 3NVW C; 3AN1 A; 4ZOH A; 1FIQ C; 1N5X A; 1N60 B; 1JRP B; 1RM6 A; 1N62 B; 3AM9 A; 3EUB 4; 3SR6 C; 3AMZ A; 2W3R B; 2W3S B; 4C7Y A; 2E3T A; 3NRZ C; 3L4P A; 4US8 A; 1FFU B; 4C80 A; 3NS1 C; 1N5W B; 1SB3 A; 1N61 B; 3FC4 A; 1VLB A; 3FAH A; 4US9 A; 4C7Z A; 2W54 B; 1VDV A; 1FO4 A; 1V97 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
