2W54B

Crystal structure of xanthine dehydrogenase from rhodobacter capsulatus in complex with bound inhibitor pterin-6-aldehyde
Total Genus 249
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
249
sequence length
776
structure length
760
Chain Sequence
SVGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAVFTAADLPHDNDASPAPSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITYAPRPAILTLDQALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAALALPAEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPPEKKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYATPKLSWDRLRGQGRPFLYFAYGAAITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTEELVWDHCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQPNREETIFRSKAVGEPPFLLGISAFLALHDACAACGPHWPDLQAPATPEAVLAAVRRAEGRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Mechanism of Substrate and Inhibitor Binding of Rhodobacter Capsulatus Xanthine Dehydrogenase.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Rhodobacter capsulatus
molecule keywords XANTHINE DEHYDROGENASE
total genus 249
structure length 760
sequence length 776
chains with identical sequence D, F, H
ec nomenclature ec 1.1.1.204: Transferred entry: 1.17.1.4.
pdb deposition date 2008-12-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01315 Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
B PF02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 2w54B05
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 2w54B02
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 2w54B04
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 2w54B03
3.90.1170.50 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 2w54B01
4C7ZA 3AM9A 1FFVB 1V97A 1WYGA 3NVVC 3AN1A 3FC4A 4ZOHA 1N60B 3HRDB 3NVZC 1FO4A 3ETRC 1DGJA 3NS1C 1N62B 1VLBA 3B9JC 4C80A 3HRDA 1FIQC 1SB3A 2E3TA 2W3RB 1VDVA 3NVWC 1N61B 2W3SB 1FFUB 3FAHA 1JRPB 1JROB 4C7YA 1N5XA 1RM6A 4US8A 1N5WB 3NVYC 4USAA 3EUB4 3SR6C 1N63B 2W55B 3NRZC 3AMZA 3L4PA 1SIJA 4US9A 2W54B 1ZXIB
chains in the Genus database with same CATH superfamily
4C7ZA 4LHMA 1QPRA 2B7PA 1VQNH 3CCMH 3NVVC 3AN1A 5MLCO 1M90J 1NVIE 3CC2H 1VQMH 1UOUA 3PIPJ 1YITH 3CMAH 1K73J 2E3TA 1QPOA 2QA4H 2OMDA 1Q81J 1NVJA 4GA5A 1N61B 4UY8M 1O4UA 3FAHA 4KWWA 4YYYA 2QEXH 4IOCJ 5HUPA 4C7YA 2PA2A 1N5XA 2WK6A 4I9AA 3CCLH 4USAA 3SR6C 1AZYA 1N63B 1S72H 5JVGJ 3CD6H 3GNNA 1T3QB 5GAHN 4WF9J 4WFBJ 3CF5J 5GADN 4WCEJ 3CCVH 1YIJH 5DM7J 3CC4H 3BIIE 4US9A 1Y69K 1VQ6H 2TPTA 3CPWH 1FFVB 1WYGA 3FC4A 3RPFA 4YEKA 1BRWA 3CCUH 1VQ8H 3NVZC 1FO4A 1DGJA 3NS1C 1VQPH 4EADA 1K8AJ 4C80A 1QPQA 1FIQC 2W3RB 2ZJPJ 3WO1A 3I55H 1JRPB 1FM0E 2Q5WE 2ZJQJ 3CCRH 1FMAE 4GA6A 3WNZA 1YJNH 3EUB4 3C2EA 3C2RA 1YJ9H 5JVHJ 2W55B 1M1KJ 3CCJH 4X46A 1Q7YJ 3PAJA 3J7ZM 1YTDA 2JBMA 4XR5A 1NJIJ 3AMZA 3L4PA 1YTEA 3TQVA 2W54B 5AYXA 3L0GA 3G71H 1VQ5H 1VQLH 3VMMA 3CCSH 5AN9F 1VQOH 4ZOHA 4U67J 1N60B 5EP8A 1Q86J 1VQKH 3HRDB 1QVFH 3DLLJ 5AYYA 3PIOJ 3ETRC 1WKIA 3CXCH 1N62B 1VLBA 3B9JC 4EAFA 1W2BH 1KQSH 1SB3A 3CMEH 5HULA 1VQ7H 1VDVA 3NVWC 2I1OA 1YI2H 2W3SB 4AP8A 3CC7H 3H5QA 1YHQH 4US8A 1N5WB 3C2OA 3NVYC 4KWVA 1VQ9H 5GAEN 1JJ2H 5DM6J 4IO9J 1QPNA 5AYZA 1KC8J 5H1SO 5HL7J 3NRZC 1ZXIB 3AM9A 2WK5A 1V97A 2B7QA 1OTPA 1KD1J 1VQ4H 1QVGH 1N8RJ 1QAPA 5GAGN 2B7NA 2WP4A 1YJWH 5EY3A 3CCEH 3HRDA 2ZJRJ 4GA4A 4WFAJ 1FFUB 1JROB 3WO0A 2OTLH 3C2VA 2QIEA 1RM6A 1YTKA 2I14A 3C2FA 3G6EH 3G4SH 5HUOA 5MPOC 2DSJA 3OW2H 3CCQH 1Q82J 4IOAJ 2OTJH 1SIJA 3I56H 2J0FA 1X1OA 1K9MJ 4WFNJ
chains in the Genus database with same CATH topology
4C7ZA 3AM9A 1FFVB 1V97A 1WYGA 3NVVC 3AN1A 3FC4A 4ZOHA 1N60B 3HRDB 3NVZC 1FO4A 3ETRC 1DGJA 3NS1C 1N62B 1VLBA 3B9JC 4C80A 3HRDA 1FIQC 1SB3A 2E3TA 2W3RB 1VDVA 3NVWC 1N61B 2W3SB 1FFUB 3FAHA 1JRPB 1JROB 4C7YA 1N5XA 1RM6A 4US8A 1N5WB 3NVYC 4USAA 3EUB4 3SR6C 1N63B 2W55B 3NRZC 3AMZA 3L4PA 1SIJA 4US9A 2W54B 1ZXIB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C7Z A;  3AM9 A;  1FFV B;  1V97 A;  1WYG A;  3NVV C;  3AN1 A;  3FC4 A;  4ZOH A;  1N60 B;  3HRD B;  3NVZ C;  1FO4 A;  3ETR C;  1DGJ A;  3NS1 C;  1N62 B;  1VLB A;  3B9J C;  4C80 A;  3HRD A;  1FIQ C;  1SB3 A;  2E3T A;  2W3R B;  1VDV A;  3NVW C;  1N61 B;  2W3S B;  1FFU B;  3FAH A;  1JRP B;  1JRO B;  4C7Y A;  1N5X A;  1RM6 A;  4US8 A;  1N5W B;  3NVY C;  4USA A;  3EUB 4;  3SR6 C;  1N63 B;  2W55 B;  3NRZ C;  3AMZ A;  3L4P A;  1SIJ A;  4US9 A;  2W54 B;  1ZXI B; 
#chains in the Genus database with same CATH topology
 4C7Z A;  4LHM A;  1QPR A;  2B7P A;  1VQN H;  3CCM H;  3NVV C;  3AN1 A;  5MLC O;  1M90 J;  1NVI E;  3CC2 H;  1VQM H;  1UOU A;  3PIP J;  1YIT H;  3CMA H;  1K73 J;  2E3T A;  1QPO A;  2QA4 H;  2OMD A;  1Q81 J;  1NVJ A;  4GA5 A;  1N61 B;  4UY8 M;  1O4U A;  3FAH A;  4KWW A;  4YYY A;  2QEX H;  4IOC J;  5HUP A;  4C7Y A;  2PA2 A;  1N5X A;  2WK6 A;  4I9A A;  3CCL H;  4USA A;  3SR6 C;  1AZY A;  1N63 B;  1S72 H;  5JVG J;  3CD6 H;  3GNN A;  1T3Q B;  5GAH N;  4WF9 J;  4WFB J;  3CF5 J;  5GAD N;  4WCE J;  3CCV H;  1YIJ H;  5DM7 J;  3CC4 H;  3BII E;  4US9 A;  1Y69 K;  1VQ6 H;  2TPT A;  3CPW H;  1FFV B;  1WYG A;  3FC4 A;  3RPF A;  4YEK A;  1BRW A;  3CCU H;  1VQ8 H;  3NVZ C;  1FO4 A;  1DGJ A;  3NS1 C;  1VQP H;  4EAD A;  1K8A J;  4C80 A;  1QPQ A;  1FIQ C;  2W3R B;  2ZJP J;  3WO1 A;  3I55 H;  1JRP B;  1FM0 E;  2Q5W E;  2ZJQ J;  3CCR H;  1FMA E;  4GA6 A;  3WNZ A;  1YJN H;  3EUB 4;  3C2E A;  3C2R A;  1YJ9 H;  5JVH J;  2W55 B;  1M1K J;  3CCJ H;  4X46 A;  1Q7Y J;  3PAJ A;  3J7Z M;  1YTD A;  2JBM A;  4XR5 A;  1NJI J;  3AMZ A;  3L4P A;  1YTE A;  3TQV A;  2W54 B;  5AYX A;  3L0G A;  3G71 H;  1VQ5 H;  1VQL H;  3VMM A;  3CCS H;  5AN9 F;  1VQO H;  4ZOH A;  4U67 J;  1N60 B;  5EP8 A;  1Q86 J;  1VQK H;  3HRD B;  1QVF H;  3DLL J;  5AYY A;  3PIO J;  3ETR C;  1WKI A;  3CXC H;  1N62 B;  1VLB A;  3B9J C;  4EAF A;  1W2B H;  1KQS H;  1SB3 A;  3CME H;  5HUL A;  1VQ7 H;  1VDV A;  3NVW C;  2I1O A;  1YI2 H;  2W3S B;  4AP8 A;  3CC7 H;  3H5Q A;  1YHQ H;  4US8 A;  1N5W B;  3C2O A;  3NVY C;  4KWV A;  1VQ9 H;  5GAE N;  1JJ2 H;  5DM6 J;  4IO9 J;  1QPN A;  5AYZ A;  1KC8 J;  5H1S O;  5HL7 J;  3NRZ C;  1ZXI B;  3AM9 A;  2WK5 A;  1V97 A;  2B7Q A;  1OTP A;  1KD1 J;  1VQ4 H;  1QVG H;  1N8R J;  1QAP A;  5GAG N;  2B7N A;  2WP4 A;  1YJW H;  5EY3 A;  3CCE H;  3HRD A;  2ZJR J;  4GA4 A;  4WFA J;  1FFU B;  1JRO B;  3WO0 A;  2OTL H;  3C2V A;  2QIE A;  1RM6 A;  1YTK A;  2I14 A;  3C2F A;  3G6E H;  3G4S H;  5HUO A;  5MPO C;  2DSJ A;  3OW2 H;  3CCQ H;  1Q82 J;  4IOA J;  2OTJ H;  1SIJ A;  3I56 H;  2J0F A;  1X1O A;  1K9M J;  4WFN J; 
#chains in the Genus database with same CATH homology
 4C7Z A;  3AM9 A;  1FFV B;  1V97 A;  1WYG A;  3NVV C;  3AN1 A;  3FC4 A;  4ZOH A;  1N60 B;  3HRD B;  3NVZ C;  1FO4 A;  3ETR C;  1DGJ A;  3NS1 C;  1N62 B;  1VLB A;  3B9J C;  4C80 A;  3HRD A;  1FIQ C;  1SB3 A;  2E3T A;  2W3R B;  1VDV A;  3NVW C;  1N61 B;  2W3S B;  1FFU B;  3FAH A;  1JRP B;  1JRO B;  4C7Y A;  1N5X A;  1RM6 A;  4US8 A;  1N5W B;  3NVY C;  4USA A;  3EUB 4;  3SR6 C;  1N63 B;  2W55 B;  3NRZ C;  3AMZ A;  3L4P A;  1SIJ A;  4US9 A;  2W54 B;  1ZXI B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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