2XR7A

Crystal structure of nicotiana tabacum malonyltransferase (ntmat1) complexed with malonyl-coa
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
452
structure length
452
Chain Sequence
ASVIEQCQVVPSPGSATELTLPLTYFDHVWLAFHRMRRILFYKLPISRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDMDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGMSIWNEMKKYKHMMKMSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGMEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRMKDEEWILSGSWFKEYDKVDAKRSLSVAGSPKLDLYAADFGWGRPEKLEFVSIDNDDGISMSLSKSKDSDGDLEIGLSLSKTRMNAFAAMFTHGISFL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis for Modification of Flavonol and Naphthol Glucoconjugates by Nicotiana Tabacum Malonyltransferase (Ntmat1).
pubmed doi rcsb
molecule tags Transferase
molecule keywords MALONYLTRANSFERASE
total genus 111
structure length 452
sequence length 452
ec nomenclature ec 2.3.1.116: Flavonol-3-O-beta-glucoside O-malonyltransferase.
pdb deposition date 2010-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02458 Transferase Transferase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2xr7A02
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2xr7A01
3FOTA 2ZBAA 4G2MA 2E1UA 3U9FA 1Q9JA 3B2SA 3L60A 1XMDA 4KE4A 2I9DA 2RKVA 2VSQA 1DPCA 2E1TA 2JGPA 4G22A 3FP0A 2II4A 1Q23A 1EAFA 1PD5A 2II5A 2XHGA 1QCAA 3B30A 5T3EA 1EADA 4N72A 4CLAA 1XMCA 1NOCB 2CLAA 2E1VA 2RKTA 3U9BA 1CIAA 3CLAA 4HVMA 5KJWA 5KJTA 5DU9A 1DPBA 1SCZA 1C4TA 1DPDA 4JN3A 5DUAA 1L5AA 2XR7A 2II3A 4G0BA 5FANA 5KJVA 5KJUA 1XL8A 1EAAA 1E2OA 1CLAA 2BGHA 3MAEA 4JN5A 4KECA 1EABA 2IHWA 1EACA 1EAEA 5KJSA 5FALA 1XL7A
chains in the Genus database with same CATH superfamily
2I9DA 2FY4A 4EYWA 1DPCA 2FW3A 4EPHA 1T7OA 2II4A 1EAFA 1Q23A 1QCAA 1EADA 1NOCB 1NM8A 5KJWA 1DPBA 1SCZA 1DPDA 5FANA 1E2OA 2BGHA 2FY2A 1EABA 2H3PA 1EAEA 5KJSA 3U9FA 3L60A 2H3UA 2RKVA 1NDFA 1PD5A 2XHGA 5T3EA 2RCUA 4CLAA 1XMCA 2CLAA 2RKTA 3U9BA 3CLAA 5DU9A 1T7QA 2H4TA 5KJUA 1XL8A 1NDIA 4KECA 4JN5A 3B30A 1EACA 1Q9JA 3B2SA 4EP9A 1XMDA 2VSQA 2DEBA 2E1TA 4G22A 2FY5A 2II5A 4HVMA 1NDBA 1Q6XA 2II3A 2XR7A 1EAAA 1CLAA 3MAEA 5FALA 1XL7A 3FOTA 2ZBAA 1T1UA 2E1UA 4KE4A 2JGPA 3FP0A 1S5OA 2H3WA 4N72A 2FY3A 2E1VA 1CIAA 5KJTA 1L5AA 1C4TA 4JN3A 5DUAA 4G0BA 5KJVA 2FYOA 2IHWA 4G2MA 1T7NA
chains in the Genus database with same CATH topology
3FOTA 2ZBAA 4G2MA 2E1UA 3U9FA 1Q9JA 3B2SA 3L60A 1XMDA 4KE4A 2I9DA 2RKVA 2VSQA 1DPCA 2E1TA 2JGPA 4G22A 3FP0A 2II4A 1Q23A 1EAFA 1PD5A 2II5A 2XHGA 1QCAA 3B30A 5T3EA 1EADA 4N72A 4CLAA 1XMCA 1NOCB 2CLAA 2E1VA 2RKTA 3U9BA 1CIAA 3CLAA 4HVMA 5KJWA 5KJTA 5DU9A 1DPBA 1SCZA 1C4TA 1DPDA 4JN3A 5DUAA 1L5AA 2XR7A 2II3A 4G0BA 5FANA 5KJVA 5KJUA 1XL8A 1EAAA 1E2OA 1CLAA 2BGHA 3MAEA 4JN5A 4KECA 1EABA 2IHWA 1EACA 1EAEA 5KJSA 5FALA 1XL7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FOT A;  2ZBA A;  4G2M A;  2E1U A;  3U9F A;  1Q9J A;  3B2S A;  3L60 A;  1XMD A;  4KE4 A;  2I9D A;  2RKV A;  2VSQ A;  1DPC A;  2E1T A;  2JGP A;  4G22 A;  3FP0 A;  2II4 A;  1Q23 A;  1EAF A;  1PD5 A;  2II5 A;  2XHG A;  1QCA A;  3B30 A;  5T3E A;  1EAD A;  4N72 A;  4CLA A;  1XMC A;  1NOC B;  2CLA A;  2E1V A;  2RKT A;  3U9B A;  1CIA A;  3CLA A;  4HVM A;  5KJW A;  5KJT A;  5DU9 A;  1DPB A;  1SCZ A;  1C4T A;  1DPD A;  4JN3 A;  5DUA A;  1L5A A;  2XR7 A;  2II3 A;  4G0B A;  5FAN A;  5KJV A;  5KJU A;  1XL8 A;  1EAA A;  1E2O A;  1CLA A;  2BGH A;  3MAE A;  4JN5 A;  4KEC A;  1EAB A;  2IHW A;  1EAC A;  1EAE A;  5KJS A;  5FAL A;  1XL7 A; 
#chains in the Genus database with same CATH topology
 2I9D A;  2FY4 A;  4EYW A;  1DPC A;  2FW3 A;  4EPH A;  1T7O A;  2II4 A;  1EAF A;  1Q23 A;  1QCA A;  1EAD A;  1NOC B;  1NM8 A;  5KJW A;  1DPB A;  1SCZ A;  1DPD A;  5FAN A;  1E2O A;  2BGH A;  2FY2 A;  1EAB A;  2H3P A;  1EAE A;  5KJS A;  3U9F A;  3L60 A;  2H3U A;  2RKV A;  1NDF A;  1PD5 A;  2XHG A;  5T3E A;  2RCU A;  4CLA A;  1XMC A;  2CLA A;  2RKT A;  3U9B A;  3CLA A;  5DU9 A;  1T7Q A;  2H4T A;  5KJU A;  1XL8 A;  1NDI A;  4KEC A;  4JN5 A;  3B30 A;  1EAC A;  1Q9J A;  3B2S A;  4EP9 A;  1XMD A;  2VSQ A;  2DEB A;  2E1T A;  4G22 A;  2FY5 A;  2II5 A;  4HVM A;  1NDB A;  1Q6X A;  2II3 A;  2XR7 A;  1EAA A;  1CLA A;  3MAE A;  5FAL A;  1XL7 A;  3FOT A;  2ZBA A;  1T1U A;  2E1U A;  4KE4 A;  2JGP A;  3FP0 A;  1S5O A;  2H3W A;  4N72 A;  2FY3 A;  2E1V A;  1CIA A;  5KJT A;  1L5A A;  1C4T A;  4JN3 A;  5DUA A;  4G0B A;  5KJV A;  2FYO A;  2IHW A;  4G2M A;  1T7N A; 
#chains in the Genus database with same CATH homology
 3FOT A;  2ZBA A;  4G2M A;  2E1U A;  3U9F A;  1Q9J A;  3B2S A;  3L60 A;  1XMD A;  4KE4 A;  2I9D A;  2RKV A;  2VSQ A;  1DPC A;  2E1T A;  2JGP A;  4G22 A;  3FP0 A;  2II4 A;  1Q23 A;  1EAF A;  1PD5 A;  2II5 A;  2XHG A;  1QCA A;  3B30 A;  5T3E A;  1EAD A;  4N72 A;  4CLA A;  1XMC A;  1NOC B;  2CLA A;  2E1V A;  2RKT A;  3U9B A;  1CIA A;  3CLA A;  4HVM A;  5KJW A;  5KJT A;  5DU9 A;  1DPB A;  1SCZ A;  1C4T A;  1DPD A;  4JN3 A;  5DUA A;  1L5A A;  2XR7 A;  2II3 A;  4G0B A;  5FAN A;  5KJV A;  5KJU A;  1XL8 A;  1EAA A;  1E2O A;  1CLA A;  2BGH A;  3MAE A;  4JN5 A;  4KEC A;  1EAB A;  2IHW A;  1EAC A;  1EAE A;  5KJS A;  5FAL A;  1XL7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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