2XR7A

Crystal structure of nicotiana tabacum malonyltransferase (ntmat1) complexed with malonyl-coa
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
452
structure length
452
Chain Sequence
ASVIEQCQVVPSPGSATELTLPLTYFDHVWLAFHRMRRILFYKLPISRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDMDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGMSIWNEMKKYKHMMKMSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGMEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRMKDEEWILSGSWFKEYDKVDAKRSLSVAGSPKLDLYAADFGWGRPEKLEFVSIDNDDGISMSLSKSKDSDGDLEIGLSLSKTRMNAFAAMFTHGISFL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis for Modification of Flavonol and Naphthol Glucoconjugates by Nicotiana Tabacum Malonyltransferase (Ntmat1).
pubmed doi rcsb
molecule tags Transferase
molecule keywords MALONYLTRANSFERASE
total genus 111
structure length 452
sequence length 452
ec nomenclature ec 2.3.1.116: Flavonol-3-O-beta-glucoside O-malonyltransferase.
pdb deposition date 2010-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02458 Transferase Transferase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2xr7A02
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2xr7A01
4JN5A 2I9DA 4G22A 1CLAA 5DU9A 5KJSA 1EAEA 1E2OA 1PD5A 3FOTA 1XMDA 3L60A 4HVMA 1NOCB 1EADA 1EABA 2BGHA 3CLAA 4G0BA 3B2SA 3B30A 3MAEA 4CLAA 3U9FA 4G2MA 1DPCA 1Q9JA 1L5AA 3U9BA 1CIAA 2E1VA 2XHGA 2RKTA 4KECA 4N72A 1C4TA 4JN3A 5FANA 2VSQA 2E1TA 1XL7A 5DUAA 5KJWA 2IHWA 1EAAA 1EAFA 4KE4A 2E1UA 2XR7A 5KJVA 1Q23A 1DPDA 2JGPA 2ZBAA 3FP0A 2II3A 5KJUA 1XMCA 2II4A 5T3EA 1EACA 5FALA 2CLAA 2II5A 1XL8A 2RKVA 1DPBA 1QCAA 1SCZA 5KJTA
chains in the Genus database with same CATH superfamily
1T7QA 5DU9A 1PD5A 3L60A 1XMDA 2H3PA 1EABA 2FY3A 1NDFA 1T7OA 4G2MA 1CIAA 2FW3A 2FY4A 1Q6XA 2E1TA 2XR7A 4EPHA 1Q23A 2ZBAA 5T3EA 1QCAA 1SCZA 5KJTA 1T1UA 1CLAA 2FY2A 4EYWA 3FOTA 4HVMA 2DEBA 2BGHA 3CLAA 4CLAA 2FYOA 2RKTA 5KJWA 4N72A 1C4TA 4JN3A 5FANA 5DUAA 1NDBA 4KE4A 2II3A 5KJUA 2RKVA 1DPBA 2I9DA 4G22A 5KJSA 1E2OA 1S5OA 1NOCB 1NM8A 4G0BA 3B30A 3U9FA 2FY5A 1Q9JA 2E1VA 1NDIA 4KECA 2VSQA 2IHWA 1EAFA 2JGPA 2H3WA 2II4A 1EACA 5FALA 2II5A 2H4TA 4JN5A 2H3UA 1EAEA 1EADA 3B2SA 3MAEA 1DPCA 4EP9A 1L5AA 3U9BA 2XHGA 1XL7A 2RCUA 1EAAA 2E1UA 5KJVA 1DPDA 3FP0A 1T7NA 1XMCA 2CLAA 1XL8A
chains in the Genus database with same CATH topology
4JN5A 2I9DA 4G22A 1CLAA 5DU9A 5KJSA 1EAEA 1E2OA 1PD5A 3FOTA 1XMDA 3L60A 4HVMA 1NOCB 1EADA 1EABA 2BGHA 3CLAA 4G0BA 3B2SA 3B30A 3MAEA 4CLAA 3U9FA 4G2MA 1DPCA 1Q9JA 1L5AA 3U9BA 1CIAA 2E1VA 2XHGA 2RKTA 4KECA 4N72A 1C4TA 4JN3A 5FANA 2VSQA 2E1TA 1XL7A 5DUAA 5KJWA 2IHWA 1EAAA 1EAFA 4KE4A 2E1UA 2XR7A 5KJVA 1Q23A 1DPDA 2JGPA 2ZBAA 3FP0A 2II3A 5KJUA 1XMCA 2II4A 5T3EA 1EACA 5FALA 2CLAA 2II5A 1XL8A 2RKVA 1DPBA 1QCAA 1SCZA 5KJTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JN5 A;  2I9D A;  4G22 A;  1CLA A;  5DU9 A;  5KJS A;  1EAE A;  1E2O A;  1PD5 A;  3FOT A;  1XMD A;  3L60 A;  4HVM A;  1NOC B;  1EAD A;  1EAB A;  2BGH A;  3CLA A;  4G0B A;  3B2S A;  3B30 A;  3MAE A;  4CLA A;  3U9F A;  4G2M A;  1DPC A;  1Q9J A;  1L5A A;  3U9B A;  1CIA A;  2E1V A;  2XHG A;  2RKT A;  4KEC A;  4N72 A;  1C4T A;  4JN3 A;  5FAN A;  2VSQ A;  2E1T A;  1XL7 A;  5DUA A;  5KJW A;  2IHW A;  1EAA A;  1EAF A;  4KE4 A;  2E1U A;  2XR7 A;  5KJV A;  1Q23 A;  1DPD A;  2JGP A;  2ZBA A;  3FP0 A;  2II3 A;  5KJU A;  1XMC A;  2II4 A;  5T3E A;  1EAC A;  5FAL A;  2CLA A;  2II5 A;  1XL8 A;  2RKV A;  1DPB A;  1QCA A;  1SCZ A;  5KJT A; 
#chains in the Genus database with same CATH topology
 1T7Q A;  5DU9 A;  1PD5 A;  3L60 A;  1XMD A;  2H3P A;  1EAB A;  2FY3 A;  1NDF A;  1T7O A;  4G2M A;  1CIA A;  2FW3 A;  2FY4 A;  1Q6X A;  2E1T A;  2XR7 A;  4EPH A;  1Q23 A;  2ZBA A;  5T3E A;  1QCA A;  1SCZ A;  5KJT A;  1T1U A;  1CLA A;  2FY2 A;  4EYW A;  3FOT A;  4HVM A;  2DEB A;  2BGH A;  3CLA A;  4CLA A;  2FYO A;  2RKT A;  5KJW A;  4N72 A;  1C4T A;  4JN3 A;  5FAN A;  5DUA A;  1NDB A;  4KE4 A;  2II3 A;  5KJU A;  2RKV A;  1DPB A;  2I9D A;  4G22 A;  5KJS A;  1E2O A;  1S5O A;  1NOC B;  1NM8 A;  4G0B A;  3B30 A;  3U9F A;  2FY5 A;  1Q9J A;  2E1V A;  1NDI A;  4KEC A;  2VSQ A;  2IHW A;  1EAF A;  2JGP A;  2H3W A;  2II4 A;  1EAC A;  5FAL A;  2II5 A;  2H4T A;  4JN5 A;  2H3U A;  1EAE A;  1EAD A;  3B2S A;  3MAE A;  1DPC A;  4EP9 A;  1L5A A;  3U9B A;  2XHG A;  1XL7 A;  2RCU A;  1EAA A;  2E1U A;  5KJV A;  1DPD A;  3FP0 A;  1T7N A;  1XMC A;  2CLA A;  1XL8 A; 
#chains in the Genus database with same CATH homology
 4JN5 A;  2I9D A;  4G22 A;  1CLA A;  5DU9 A;  5KJS A;  1EAE A;  1E2O A;  1PD5 A;  3FOT A;  1XMD A;  3L60 A;  4HVM A;  1NOC B;  1EAD A;  1EAB A;  2BGH A;  3CLA A;  4G0B A;  3B2S A;  3B30 A;  3MAE A;  4CLA A;  3U9F A;  4G2M A;  1DPC A;  1Q9J A;  1L5A A;  3U9B A;  1CIA A;  2E1V A;  2XHG A;  2RKT A;  4KEC A;  4N72 A;  1C4T A;  4JN3 A;  5FAN A;  2VSQ A;  2E1T A;  1XL7 A;  5DUA A;  5KJW A;  2IHW A;  1EAA A;  1EAF A;  4KE4 A;  2E1U A;  2XR7 A;  5KJV A;  1Q23 A;  1DPD A;  2JGP A;  2ZBA A;  3FP0 A;  2II3 A;  5KJU A;  1XMC A;  2II4 A;  5T3E A;  1EAC A;  5FAL A;  2CLA A;  2II5 A;  1XL8 A;  2RKV A;  1DPB A;  1QCA A;  1SCZ A;  5KJT A; 
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similar chains in the Genus database (?% sequence similarity)
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