1CFYA

Yeast cofilin, monoclinic crystal form
Total Genus 38
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
133
structure length
133
Chain Sequence
VAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDPSYDAFLEKLPENDCLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERVSR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structure determination of yeast cofilin.
pubmed doi rcsb
molecule tags Actin-binding protein
source organism Saccharomyces cerevisiae
molecule keywords COFILIN
total genus 38
structure length 133
sequence length 133
chains with identical sequence B
ec nomenclature
pdb deposition date 1996-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1cfyA00
3EGXA 5HVKD 5KYYB 2HD7A 1F7SA 1M4JA 1QPVA 4CBWG 1NMDG 1P8XA 1EQYS 1WFSA 2L72A 5KYNA 1HQZ1 4LIZA 1AK7A 5KYWB 2FF6G 4CBUG 2NUPB 2FH2A 3EG9A 3CJBG 3CJCG 3FG6A 3FG7A 2VACA 5KYXA 2MP4A 1KCQA 2FH4A 1CFYA 3A5NS 1T3YA 1C0GS 2LJ8A 1Q8XA 2LXXA 3L50A 4KEDA 5DD2A 1D0NA 1ESVS 1DEJS 5FAFA 2I2QA 4PKGG 5KYUA 3EG9B 2NUTA 5L6WC 4S10C 1M2OA 1SVRA 2FGHA 2MV2A 3EFOA 5KYXB 4PKIG 2LLFA 1NLVG 1JHWA 4CBXG 1AHQA 2MOTA 1PD1A 2FH3A 1MDUA 3EGXB 3A5LS 1AK6A 3FFNA 3Q2BA 4Z94G 5FAEA 1D4XG 3FFKA 2W0IA 5KYUB 1P8ZG 1TVJA 1X67A 2NUTB 1VFQA 3TU5B 1C0FS 1T2LA 3EFOB 5HVKB 1SVYA 1TMWA 3CI5G 1UDMA 1VKKA 2VIKA 4JD2H 4PKHB 3EGDA 2XFAA 1H1VG 1M2VA 2FH1A 1WNJA 2D8BA 1T3XA 3CIPG 1PCXA 5A1MA 2QTVA 3DAWB 4KEFA 1NPHA 1WM4A 1PD0A 1COFA 5KYYA 2FF3A 4BEX1 3EH2A 2VILA 3EH1A 1J72A 1T44G 2KVKA 5KYWA 1CNUA 1YVNG 3EGDB 1M2VB 2NUPA 1Q8GA 1SVQA 1V6FA 2XF1A 1NM1G 1RGIG 3A5OS 1YAGG 4KEEA 5IVUA 3A5MS
chains in the Genus database with same CATH superfamily
3EGXA 5HVKD 5KYYB 2HD7A 1F7SA 1M4JA 1QPVA 4CBWG 1NMDG 1P8XA 1EQYS 1WFSA 2L72A 3DA7A 5KYNA 1HQZ1 4LIZA 1AK7A 5KYWB 2FF6G 4CBUG 2NUPB 2FH2A 3EG9A 3CJBG 3CJCG 3FG6A 3FG7A 2VACA 5KYXA 2MP4A 1KCQA 2FH4A 1CFYA 3A5NS 1T3YA 1C0GS 2LJ8A 1Q8XA 2LXXA 3L50A 4KEDA 5DD2A 1D0NA 1ESVS 1DEJS 5FAFA 2I2QA 4PKGG 5KYUA 3EG9B 2NUTA 5L6WC 4S10C 1M2OA 1SVRA 2FGHA 2MV2A 3EFOA 5KYXB 4PKIG 2LLFA 1NLVG 1JHWA 4CBXG 1AHQA 2MOTA 1PD1A 2FH3A 1MDUA 3EGXB 3A5LS 1AK6A 3FFNA 3Q2BA 4Z94G 5FAEA 1D4XG 3FFKA 2W0IA 5KYUB 1P8ZG 1TVJA 1X67A 2NUTB 1VFQA 3TU5B 1C0FS 1T2LA 3EFOB 5HVKB 1SVYA 1TMWA 3CI5G 1UDMA 1VKKA 2VIKA 4JD2H 4PKHB 3EGDA 2XFAA 1H1VG 1M2VA 2FH1A 1WNJA 2D8BA 1T3XA 3CIPG 1PCXA 5A1MA 2QTVA 3DAWB 4KEFA 1NPHA 1WM4A 1PD0A 1COFA 5KYYA 2FF3A 4BEX1 3EH2A 2VILA 3EH1A 1J72A 1T44G 2KVKA 5KYWA 1CNUA 1YVNG 3EGDB 1M2VB 2NUPA 1Q8GA 1SVQA 1V6FA 2XF1A 1NM1G 1RGIG 3A5OS 1YAGG 4KEEA 5IVUA 3A5MS
chains in the Genus database with same CATH topology
3EGXA 5HVKD 5KYYB 2HD7A 1F7SA 1M4JA 1QPVA 4CBWG 1NMDG 1P8XA 1EQYS 1WFSA 2L72A 3DA7A 5KYNA 1HQZ1 4LIZA 1AK7A 5KYWB 2FF6G 4CBUG 2NUPB 2FH2A 3EG9A 3CJBG 3CJCG 3FG6A 3FG7A 2VACA 5KYXA 2MP4A 1KCQA 2FH4A 1CFYA 3A5NS 1T3YA 1C0GS 2LJ8A 1Q8XA 2LXXA 3L50A 4KEDA 5DD2A 1D0NA 1ESVS 1DEJS 5FAFA 2I2QA 4PKGG 5KYUA 3EG9B 2NUTA 5L6WC 4S10C 1M2OA 1SVRA 2FGHA 2MV2A 3EFOA 5KYXB 4PKIG 2LLFA 1NLVG 1JHWA 4CBXG 1AHQA 2MOTA 1PD1A 2FH3A 1MDUA 3EGXB 3A5LS 1AK6A 3FFNA 3Q2BA 4Z94G 5FAEA 1D4XG 3FFKA 2W0IA 5KYUB 1P8ZG 1TVJA 1X67A 2NUTB 1VFQA 3TU5B 1C0FS 1T2LA 3EFOB 5HVKB 1SVYA 1TMWA 3CI5G 1UDMA 1VKKA 2VIKA 4JD2H 4PKHB 3EGDA 2XFAA 1H1VG 1M2VA 2FH1A 1WNJA 2D8BA 1T3XA 3CIPG 1PCXA 5A1MA 2QTVA 3DAWB 4KEFA 1NPHA 1WM4A 1PD0A 1COFA 5KYYA 2FF3A 4BEX1 3EH2A 2VILA 3EH1A 1J72A 1T44G 2KVKA 5KYWA 1CNUA 1YVNG 3EGDB 1M2VB 2NUPA 1Q8GA 1SVQA 1V6FA 2XF1A 1NM1G 1RGIG 3A5OS 1YAGG 4KEEA 5IVUA 3A5MS
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EGX A;  5HVK D;  5KYY B;  2HD7 A;  1F7S A;  1M4J A;  1QPV A;  4CBW G;  1NMD G;  1P8X A;  1EQY S;  1WFS A;  2L72 A;  5KYN A;  1HQZ 1;  4LIZ A;  1AK7 A;  5KYW B;  2FF6 G;  4CBU G;  2NUP B;  2FH2 A;  3EG9 A;  3CJB G;  3CJC G;  3FG6 A;  3FG7 A;  2VAC A;  5KYX A;  2MP4 A;  1KCQ A;  2FH4 A;  1CFY A;  3A5N S;  1T3Y A;  1C0G S;  2LJ8 A;  1Q8X A;  2LXX A;  3L50 A;  4KED A;  5DD2 A;  1D0N A;  1ESV S;  1DEJ S;  5FAF A;  2I2Q A;  4PKG G;  5KYU A;  3EG9 B;  2NUT A;  5L6W C;  4S10 C;  1M2O A;  1SVR A;  2FGH A;  2MV2 A;  3EFO A;  5KYX B;  4PKI G;  2LLF A;  1NLV G;  1JHW A;  4CBX G;  1AHQ A;  2MOT A;  1PD1 A;  2FH3 A;  1MDU A;  3EGX B;  3A5L S;  1AK6 A;  3FFN A;  3Q2B A;  4Z94 G;  5FAE A;  1D4X G;  3FFK A;  2W0I A;  5KYU B;  1P8Z G;  1TVJ A;  1X67 A;  2NUT B;  1VFQ A;  3TU5 B;  1C0F S;  1T2L A;  3EFO B;  5HVK B;  1SVY A;  1TMW A;  3CI5 G;  1UDM A;  1VKK A;  2VIK A;  4JD2 H;  4PKH B;  3EGD A;  2XFA A;  1H1V G;  1M2V A;  2FH1 A;  1WNJ A;  2D8B A;  1T3X A;  3CIP G;  1PCX A;  5A1M A;  2QTV A;  3DAW B;  4KEF A;  1NPH A;  1WM4 A;  1PD0 A;  1COF A;  5KYY A;  2FF3 A;  4BEX 1;  3EH2 A;  2VIL A;  3EH1 A;  1J72 A;  1T44 G;  2KVK A;  5KYW A;  1CNU A;  1YVN G;  3EGD B;  1M2V B;  2NUP A;  1Q8G A;  1SVQ A;  1V6F A;  2XF1 A;  1NM1 G;  1RGI G;  3A5O S;  1YAG G;  4KEE A;  5IVU A;  3A5M S; 
#chains in the Genus database with same CATH topology
 3EGX A;  5HVK D;  5KYY B;  2HD7 A;  1F7S A;  1M4J A;  1QPV A;  4CBW G;  1NMD G;  1P8X A;  1EQY S;  1WFS A;  2L72 A;  3DA7 A;  5KYN A;  1HQZ 1;  4LIZ A;  1AK7 A;  5KYW B;  2FF6 G;  4CBU G;  2NUP B;  2FH2 A;  3EG9 A;  3CJB G;  3CJC G;  3FG6 A;  3FG7 A;  2VAC A;  5KYX A;  2MP4 A;  1KCQ A;  2FH4 A;  1CFY A;  3A5N S;  1T3Y A;  1C0G S;  2LJ8 A;  1Q8X A;  2LXX A;  3L50 A;  4KED A;  5DD2 A;  1D0N A;  1ESV S;  1DEJ S;  5FAF A;  2I2Q A;  4PKG G;  5KYU A;  3EG9 B;  2NUT A;  5L6W C;  4S10 C;  1M2O A;  1SVR A;  2FGH A;  2MV2 A;  3EFO A;  5KYX B;  4PKI G;  2LLF A;  1NLV G;  1JHW A;  4CBX G;  1AHQ A;  2MOT A;  1PD1 A;  2FH3 A;  1MDU A;  3EGX B;  3A5L S;  1AK6 A;  3FFN A;  3Q2B A;  4Z94 G;  5FAE A;  1D4X G;  3FFK A;  2W0I A;  5KYU B;  1P8Z G;  1TVJ A;  1X67 A;  2NUT B;  1VFQ A;  3TU5 B;  1C0F S;  1T2L A;  3EFO B;  5HVK B;  1SVY A;  1TMW A;  3CI5 G;  1UDM A;  1VKK A;  2VIK A;  4JD2 H;  4PKH B;  3EGD A;  2XFA A;  1H1V G;  1M2V A;  2FH1 A;  1WNJ A;  2D8B A;  1T3X A;  3CIP G;  1PCX A;  5A1M A;  2QTV A;  3DAW B;  4KEF A;  1NPH A;  1WM4 A;  1PD0 A;  1COF A;  5KYY A;  2FF3 A;  4BEX 1;  3EH2 A;  2VIL A;  3EH1 A;  1J72 A;  1T44 G;  2KVK A;  5KYW A;  1CNU A;  1YVN G;  3EGD B;  1M2V B;  2NUP A;  1Q8G A;  1SVQ A;  1V6F A;  2XF1 A;  1NM1 G;  1RGI G;  3A5O S;  1YAG G;  4KEE A;  5IVU A;  3A5M S; 
#chains in the Genus database with same CATH homology
 3EGX A;  5HVK D;  5KYY B;  2HD7 A;  1F7S A;  1M4J A;  1QPV A;  4CBW G;  1NMD G;  1P8X A;  1EQY S;  1WFS A;  2L72 A;  3DA7 A;  5KYN A;  1HQZ 1;  4LIZ A;  1AK7 A;  5KYW B;  2FF6 G;  4CBU G;  2NUP B;  2FH2 A;  3EG9 A;  3CJB G;  3CJC G;  3FG6 A;  3FG7 A;  2VAC A;  5KYX A;  2MP4 A;  1KCQ A;  2FH4 A;  1CFY A;  3A5N S;  1T3Y A;  1C0G S;  2LJ8 A;  1Q8X A;  2LXX A;  3L50 A;  4KED A;  5DD2 A;  1D0N A;  1ESV S;  1DEJ S;  5FAF A;  2I2Q A;  4PKG G;  5KYU A;  3EG9 B;  2NUT A;  5L6W C;  4S10 C;  1M2O A;  1SVR A;  2FGH A;  2MV2 A;  3EFO A;  5KYX B;  4PKI G;  2LLF A;  1NLV G;  1JHW A;  4CBX G;  1AHQ A;  2MOT A;  1PD1 A;  2FH3 A;  1MDU A;  3EGX B;  3A5L S;  1AK6 A;  3FFN A;  3Q2B A;  4Z94 G;  5FAE A;  1D4X G;  3FFK A;  2W0I A;  5KYU B;  1P8Z G;  1TVJ A;  1X67 A;  2NUT B;  1VFQ A;  3TU5 B;  1C0F S;  1T2L A;  3EFO B;  5HVK B;  1SVY A;  1TMW A;  3CI5 G;  1UDM A;  1VKK A;  2VIK A;  4JD2 H;  4PKH B;  3EGD A;  2XFA A;  1H1V G;  1M2V A;  2FH1 A;  1WNJ A;  2D8B A;  1T3X A;  3CIP G;  1PCX A;  5A1M A;  2QTV A;  3DAW B;  4KEF A;  1NPH A;  1WM4 A;  1PD0 A;  1COF A;  5KYY A;  2FF3 A;  4BEX 1;  3EH2 A;  2VIL A;  3EH1 A;  1J72 A;  1T44 G;  2KVK A;  5KYW A;  1CNU A;  1YVN G;  3EGD B;  1M2V B;  2NUP A;  1Q8G A;  1SVQ A;  1V6F A;  2XF1 A;  1NM1 G;  1RGI G;  3A5O S;  1YAG G;  4KEE A;  5IVU A;  3A5M S; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...