1JHWA

Ca2+-binding mimicry in the crystal structure of the eu3+-bound mutant human macrophage capping protein cap g
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
336
structure length
326
Chain Sequence
PFPGSVQDPGLHVWRVEKLKPVPVAQENQGVFFSGDSYLVLHNGPEEVSHLHLWIGQQSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKYQEGGVESGFKHVVPNEVVVQRLYQVKGAKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEMIQVLGPKPALKEGNPAQAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQAALQVAEGFISRMQYAPNTQVEILPQGRESPIFKQFFKDW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Mutant Human Macrophage Capping Protein
rcsb
source organism Homo sapiens
molecule tags Structural protein
molecule keywords MACROPHAGE CAPPING PROTEIN
total genus 78
structure length 326
sequence length 336
ec nomenclature
pdb deposition date 2001-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1jhwA02
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1jhwA03
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1jhwA01
1UDMA 1M4JA 3A5OS 1CNUA 1M2VA 5FAEA 3FG7A 4PKHB 1WNJA 5KYNA 4KEFA 1TVJA 3CJBG 4PKGG 1T3XA 1RGIG 1JHWA 1H1VG 3EGDB 1J72A 2MV2A 3CIPG 1M2OA 1C0FS 2QTVA 1NLVG 1HQZ1 3FG6A 1M2VB 1T3YA 3A5MS 5KYUB 1COFA 4KEEA 3Q2BA 5IVUA 1YVNG 2FGHA 2LXXA 4JD2H 2FH2A 2MP4A 2FF3A 1PCXA 1ESVS 1EQYS 2XFAA 1P8ZG 1NPHA 1NMDG 1VKKA 5DD2A 4Z94G 4S10C 5KYUA 1F7SA 2W0IA 5HVKD 4CBWG 3CJCG 1Q8GA 5KYXB 5A1MA 3EG9B 2FH1A 1AHQA 2FF6G 4KEDA 2I2QA 1SVRA 2HD7A 4CBXG 2MOTA 1AK6A 2XF1A 1C0GS 1MDUA 5KYWA 3A5NS 1PD1A 3CI5G 4PKIG 1KCQA 2LLFA 3EH2A 4CBUG 1YAGG 5HVKB 2KVKA 3EFOB 5KYYB 2FH3A 5FAFA 3L50A 3TU5B 1TMWA 3EGXA 2D8BA 5KYYA 1Q8XA 5KYXA 3EG9A 3DAWB 1SVYA 3FFNA 1X67A 1WM4A 1T44G 1CFYA 2VILA 4LIZA 1AK7A 3A5LS 1V6FA 2NUTA 5KYWB 1D0NA 1PD0A 1WFSA 2NUTB 3EH1A 5L6WC 2VIKA 4BEX1 2VACA 2FH4A 2LJ8A 2NUPB 3EFOA 1D4XG 3EGDA 1T2LA 1SVQA 2NUPA 3EGXB 1DEJS 1NM1G 1QPVA 1VFQA 3FFKA 1P8XA 2L72A
chains in the Genus database with same CATH superfamily
1UDMA 1M4JA 3A5OS 1CNUA 1M2VA 5FAEA 3FG7A 4PKHB 1WNJA 5KYNA 4KEFA 1TVJA 3CJBG 4PKGG 1T3XA 1RGIG 1JHWA 1H1VG 3EGDB 1J72A 2MV2A 3CIPG 1M2OA 1C0FS 2QTVA 1NLVG 3DA7A 1HQZ1 3FG6A 1M2VB 1T3YA 3A5MS 5KYUB 1COFA 4KEEA 3Q2BA 5IVUA 1YVNG 2FGHA 2LXXA 4JD2H 2FH2A 2MP4A 2FF3A 1PCXA 1ESVS 1EQYS 2XFAA 1P8ZG 1NPHA 1NMDG 1VKKA 5DD2A 4Z94G 4S10C 5KYUA 1F7SA 2W0IA 5HVKD 4CBWG 3CJCG 1Q8GA 5KYXB 5A1MA 3EG9B 2FH1A 1AHQA 2FF6G 4KEDA 2I2QA 1SVRA 2HD7A 4CBXG 2MOTA 1AK6A 2XF1A 1C0GS 1MDUA 5KYWA 3A5NS 1PD1A 3CI5G 4PKIG 1KCQA 2LLFA 3EH2A 4CBUG 1YAGG 5HVKB 2KVKA 3EFOB 5KYYB 2FH3A 5FAFA 3L50A 3TU5B 1TMWA 3EGXA 2D8BA 5KYYA 1Q8XA 5KYXA 3EG9A 3DAWB 1SVYA 3FFNA 1X67A 1WM4A 1T44G 1CFYA 2VILA 4LIZA 1AK7A 3A5LS 1V6FA 2NUTA 5KYWB 1D0NA 1PD0A 1WFSA 2NUTB 3EH1A 5L6WC 2VIKA 4BEX1 2VACA 2FH4A 2LJ8A 2NUPB 3EFOA 1D4XG 3EGDA 1T2LA 1SVQA 2NUPA 3EGXB 1DEJS 1NM1G 1QPVA 1VFQA 3FFKA 1P8XA 2L72A
chains in the Genus database with same CATH topology
1UDMA 1M4JA 3A5OS 1CNUA 1M2VA 5FAEA 3FG7A 4PKHB 1WNJA 5KYNA 4KEFA 1TVJA 3CJBG 4PKGG 1T3XA 1RGIG 1JHWA 1H1VG 3EGDB 1J72A 2MV2A 3CIPG 1M2OA 1C0FS 2QTVA 1NLVG 3DA7A 1HQZ1 3FG6A 1M2VB 1T3YA 3A5MS 5KYUB 1COFA 4KEEA 3Q2BA 5IVUA 1YVNG 2FGHA 2LXXA 4JD2H 2FH2A 2MP4A 2FF3A 1PCXA 1ESVS 1EQYS 2XFAA 1P8ZG 1NPHA 1NMDG 1VKKA 5DD2A 4Z94G 4S10C 5KYUA 1F7SA 2W0IA 5HVKD 4CBWG 3CJCG 1Q8GA 5KYXB 5A1MA 3EG9B 2FH1A 1AHQA 2FF6G 4KEDA 2I2QA 1SVRA 2HD7A 4CBXG 2MOTA 1AK6A 2XF1A 1C0GS 1MDUA 5KYWA 3A5NS 1PD1A 3CI5G 4PKIG 1KCQA 2LLFA 3EH2A 4CBUG 1YAGG 5HVKB 2KVKA 3EFOB 5KYYB 2FH3A 5FAFA 3L50A 3TU5B 1TMWA 3EGXA 2D8BA 5KYYA 1Q8XA 5KYXA 3EG9A 3DAWB 1SVYA 3FFNA 1X67A 1WM4A 1T44G 1CFYA 2VILA 4LIZA 1AK7A 3A5LS 1V6FA 2NUTA 5KYWB 1D0NA 1PD0A 1WFSA 2NUTB 3EH1A 5L6WC 2VIKA 4BEX1 2VACA 2FH4A 2LJ8A 2NUPB 3EFOA 1D4XG 3EGDA 1T2LA 1SVQA 2NUPA 3EGXB 1DEJS 1NM1G 1QPVA 1VFQA 3FFKA 1P8XA 2L72A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UDM A;  1M4J A;  3A5O S;  1CNU A;  1M2V A;  5FAE A;  3FG7 A;  4PKH B;  1WNJ A;  5KYN A;  4KEF A;  1TVJ A;  3CJB G;  4PKG G;  1T3X A;  1RGI G;  1JHW A;  1H1V G;  3EGD B;  1J72 A;  2MV2 A;  3CIP G;  1M2O A;  1C0F S;  2QTV A;  1NLV G;  1HQZ 1;  3FG6 A;  1M2V B;  1T3Y A;  3A5M S;  5KYU B;  1COF A;  4KEE A;  3Q2B A;  5IVU A;  1YVN G;  2FGH A;  2LXX A;  4JD2 H;  2FH2 A;  2MP4 A;  2FF3 A;  1PCX A;  1ESV S;  1EQY S;  2XFA A;  1P8Z G;  1NPH A;  1NMD G;  1VKK A;  5DD2 A;  4Z94 G;  4S10 C;  5KYU A;  1F7S A;  2W0I A;  5HVK D;  4CBW G;  3CJC G;  1Q8G A;  5KYX B;  5A1M A;  3EG9 B;  2FH1 A;  1AHQ A;  2FF6 G;  4KED A;  2I2Q A;  1SVR A;  2HD7 A;  4CBX G;  2MOT A;  1AK6 A;  2XF1 A;  1C0G S;  1MDU A;  5KYW A;  3A5N S;  1PD1 A;  3CI5 G;  4PKI G;  1KCQ A;  2LLF A;  3EH2 A;  4CBU G;  1YAG G;  5HVK B;  2KVK A;  3EFO B;  5KYY B;  2FH3 A;  5FAF A;  3L50 A;  3TU5 B;  1TMW A;  3EGX A;  2D8B A;  5KYY A;  1Q8X A;  5KYX A;  3EG9 A;  3DAW B;  1SVY A;  3FFN A;  1X67 A;  1WM4 A;  1T44 G;  1CFY A;  2VIL A;  4LIZ A;  1AK7 A;  3A5L S;  1V6F A;  2NUT A;  5KYW B;  1D0N A;  1PD0 A;  1WFS A;  2NUT B;  3EH1 A;  5L6W C;  2VIK A;  4BEX 1;  2VAC A;  2FH4 A;  2LJ8 A;  2NUP B;  3EFO A;  1D4X G;  3EGD A;  1T2L A;  1SVQ A;  2NUP A;  3EGX B;  1DEJ S;  1NM1 G;  1QPV A;  1VFQ A;  3FFK A;  1P8X A;  2L72 A; 
#chains in the Genus database with same CATH topology
 1UDM A;  1M4J A;  3A5O S;  1CNU A;  1M2V A;  5FAE A;  3FG7 A;  4PKH B;  1WNJ A;  5KYN A;  4KEF A;  1TVJ A;  3CJB G;  4PKG G;  1T3X A;  1RGI G;  1JHW A;  1H1V G;  3EGD B;  1J72 A;  2MV2 A;  3CIP G;  1M2O A;  1C0F S;  2QTV A;  1NLV G;  3DA7 A;  1HQZ 1;  3FG6 A;  1M2V B;  1T3Y A;  3A5M S;  5KYU B;  1COF A;  4KEE A;  3Q2B A;  5IVU A;  1YVN G;  2FGH A;  2LXX A;  4JD2 H;  2FH2 A;  2MP4 A;  2FF3 A;  1PCX A;  1ESV S;  1EQY S;  2XFA A;  1P8Z G;  1NPH A;  1NMD G;  1VKK A;  5DD2 A;  4Z94 G;  4S10 C;  5KYU A;  1F7S A;  2W0I A;  5HVK D;  4CBW G;  3CJC G;  1Q8G A;  5KYX B;  5A1M A;  3EG9 B;  2FH1 A;  1AHQ A;  2FF6 G;  4KED A;  2I2Q A;  1SVR A;  2HD7 A;  4CBX G;  2MOT A;  1AK6 A;  2XF1 A;  1C0G S;  1MDU A;  5KYW A;  3A5N S;  1PD1 A;  3CI5 G;  4PKI G;  1KCQ A;  2LLF A;  3EH2 A;  4CBU G;  1YAG G;  5HVK B;  2KVK A;  3EFO B;  5KYY B;  2FH3 A;  5FAF A;  3L50 A;  3TU5 B;  1TMW A;  3EGX A;  2D8B A;  5KYY A;  1Q8X A;  5KYX A;  3EG9 A;  3DAW B;  1SVY A;  3FFN A;  1X67 A;  1WM4 A;  1T44 G;  1CFY A;  2VIL A;  4LIZ A;  1AK7 A;  3A5L S;  1V6F A;  2NUT A;  5KYW B;  1D0N A;  1PD0 A;  1WFS A;  2NUT B;  3EH1 A;  5L6W C;  2VIK A;  4BEX 1;  2VAC A;  2FH4 A;  2LJ8 A;  2NUP B;  3EFO A;  1D4X G;  3EGD A;  1T2L A;  1SVQ A;  2NUP A;  3EGX B;  1DEJ S;  1NM1 G;  1QPV A;  1VFQ A;  3FFK A;  1P8X A;  2L72 A; 
#chains in the Genus database with same CATH homology
 1UDM A;  1M4J A;  3A5O S;  1CNU A;  1M2V A;  5FAE A;  3FG7 A;  4PKH B;  1WNJ A;  5KYN A;  4KEF A;  1TVJ A;  3CJB G;  4PKG G;  1T3X A;  1RGI G;  1JHW A;  1H1V G;  3EGD B;  1J72 A;  2MV2 A;  3CIP G;  1M2O A;  1C0F S;  2QTV A;  1NLV G;  3DA7 A;  1HQZ 1;  3FG6 A;  1M2V B;  1T3Y A;  3A5M S;  5KYU B;  1COF A;  4KEE A;  3Q2B A;  5IVU A;  1YVN G;  2FGH A;  2LXX A;  4JD2 H;  2FH2 A;  2MP4 A;  2FF3 A;  1PCX A;  1ESV S;  1EQY S;  2XFA A;  1P8Z G;  1NPH A;  1NMD G;  1VKK A;  5DD2 A;  4Z94 G;  4S10 C;  5KYU A;  1F7S A;  2W0I A;  5HVK D;  4CBW G;  3CJC G;  1Q8G A;  5KYX B;  5A1M A;  3EG9 B;  2FH1 A;  1AHQ A;  2FF6 G;  4KED A;  2I2Q A;  1SVR A;  2HD7 A;  4CBX G;  2MOT A;  1AK6 A;  2XF1 A;  1C0G S;  1MDU A;  5KYW A;  3A5N S;  1PD1 A;  3CI5 G;  4PKI G;  1KCQ A;  2LLF A;  3EH2 A;  4CBU G;  1YAG G;  5HVK B;  2KVK A;  3EFO B;  5KYY B;  2FH3 A;  5FAF A;  3L50 A;  3TU5 B;  1TMW A;  3EGX A;  2D8B A;  5KYY A;  1Q8X A;  5KYX A;  3EG9 A;  3DAW B;  1SVY A;  3FFN A;  1X67 A;  1WM4 A;  1T44 G;  1CFY A;  2VIL A;  4LIZ A;  1AK7 A;  3A5L S;  1V6F A;  2NUT A;  5KYW B;  1D0N A;  1PD0 A;  1WFS A;  2NUT B;  3EH1 A;  5L6W C;  2VIK A;  4BEX 1;  2VAC A;  2FH4 A;  2LJ8 A;  2NUP B;  3EFO A;  1D4X G;  3EGD A;  1T2L A;  1SVQ A;  2NUP A;  3EGX B;  1DEJ S;  1NM1 G;  1QPV A;  1VFQ A;  3FFK A;  1P8X A;  2L72 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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