The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
38
|
sequence length |
148
|
structure length |
148
|
Chain Sequence |
MASGVTVSDVCKTTYEEIKKDKKHRYVIFYIRDEKQIDVETVADRNAEYDQFLEDIQKCGPGECRYGLFDFEYMHQCQGTSESSKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASREAVEEKLRATDRQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Solution structure and dynamics of Twinstar from Drosophila melanogastor
rcsb |
molecule tags |
Actin binding protein
|
source organism |
Drosophila melanogaster
|
molecule keywords |
Cofilin/actin-depolymerizing factor homolog
|
total genus |
38
|
structure length |
148
|
sequence length |
148
|
ec nomenclature | |
pdb deposition date | 2014-09-20 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF00241 | Cofilin_ADF | Cofilin/tropomyosin-type actin-binding protein |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Alpha Beta | 3-Layer(aba) Sandwich | Severin | Severin |
#chains in the Genus database with same CATH superfamily 2FF6 G; 3CI5 G; 1JHW A; 1YVN G; 2FH2 A; 2VIK A; 3EH2 A; 1VKK A; 5KYW A; 2NUT B; 1VFQ A; 2XF1 A; 2MP4 A; 1UDM A; 1M4J A; 1WNJ A; 4KEE A; 5KYW B; 3DAW B; 1ESV S; 1AHQ A; 3FG7 A; 5HVK B; 3L50 A; 1HQZ 1; 2FH1 A; 2MV2 A; 4CBW G; 1CFY A; 4PKI G; 5A1M A; 2XFA A; 3CJB G; 1EQY S; 4PKH B; 1SVQ A; 4BEX 1; 1Q8G A; 2NUT A; 1PD1 A; 5KYU A; 2L72 A; 4Z94 G; 1WFS A; 1COF A; 4CBU G; 1P8X A; 5KYU B; 5KYY B; 2KVK A; 3CJC G; 1C0F S; 1QPV A; 1AK7 A; 2LXX A; 1TMW A; 1X67 A; 1M2O A; 1NLV G; 1KCQ A; 1T44 G; 4S10 C; 1RGI G; 5DD2 A; 4KED A; 2FH3 A; 1NMD G; 4PKG G; 5KYN A; 2FF3 A; 4CBX G; 1Q8X A; 3TU5 B; 3EG9 B; 2NUP B; 1YAG G; 4KEF A; 3EH1 A; 1T3Y A; 5IVU A; 2MOT A; 1SVR A; 1CNU A; 1NM1 G; 5KYY A; 3FFK A; 3CIP G; 1V6F A; 5FAF A; 2HD7 A; 2I2Q A; 3A5L S; 3Q2B A; 2VIL A; 1F7S A; 1TVJ A; 3EGD B; 2FGH A; 1PCX A; 1DEJ S; 5L6W C; 1MDU A; 1SVY A; 1T2L A; 2D8B A; 3EG9 A; 5FAE A; 2NUP A; 3FG6 A; 2W0I A; 1D4X G; 1M2V B; 3A5M S; 1C0G S; 3A5O S; 1J72 A; 1T3X A; 5HVK D; 1WM4 A; 3EFO A; 5KYX A; 1D0N A; 3FFN A; 3EGX A; 1PD0 A; 1AK6 A; 2FH4 A; 2VAC A; 2LLF A; 3EFO B; 3EGD A; 4LIZ A; 4JD2 H; 5KYX B; 1NPH A; 1P8Z G; 3EGX B; 3A5N S; 1H1V G; 1M2V A; 2LJ8 A; 2QTV A; #chains in the Genus database with same CATH topology 2FF6 G; 3CI5 G; 1JHW A; 1YVN G; 2FH2 A; 2VIK A; 3EH2 A; 1VKK A; 5KYW A; 2NUT B; 1VFQ A; 2XF1 A; 2MP4 A; 1UDM A; 1M4J A; 1WNJ A; 4KEE A; 5KYW B; 3DAW B; 1ESV S; 1AHQ A; 3FG7 A; 5HVK B; 3DA7 A; 1HQZ 1; 2FH1 A; 2MV2 A; 3L50 A; 4CBW G; 1CFY A; 4PKI G; 5A1M A; 2XFA A; 3CJB G; 1EQY S; 4PKH B; 1SVQ A; 4BEX 1; 1Q8G A; 2NUT A; 1PD1 A; 5KYU A; 2L72 A; 4Z94 G; 1WFS A; 1COF A; 4CBU G; 1P8X A; 5KYU B; 5KYY B; 2KVK A; 3CJC G; 1C0F S; 1QPV A; 1AK7 A; 2LXX A; 1TMW A; 1X67 A; 1M2O A; 1NLV G; 1KCQ A; 1T44 G; 4S10 C; 1RGI G; 5DD2 A; 4KED A; 2FH3 A; 1NMD G; 4PKG G; 5KYN A; 2FF3 A; 4CBX G; 1Q8X A; 3TU5 B; 3EG9 B; 2NUP B; 1YAG G; 4KEF A; 3EH1 A; 1T3Y A; 5IVU A; 2MOT A; 1SVR A; 1CNU A; 1NM1 G; 5KYY A; 3FFK A; 3CIP G; 1V6F A; 5FAF A; 2HD7 A; 2I2Q A; 3A5L S; 3Q2B A; 2VIL A; 1F7S A; 1TVJ A; 3EGD B; 2FGH A; 1PCX A; 1DEJ S; 5L6W C; 1MDU A; 1SVY A; 1T2L A; 2D8B A; 3EG9 A; 5FAE A; 2NUP A; 3FG6 A; 2W0I A; 1D4X G; 1M2V B; 3A5M S; 1C0G S; 3A5O S; 1J72 A; 1T3X A; 5HVK D; 1WM4 A; 3EFO A; 5KYX A; 1D0N A; 3FFN A; 3EGX A; 1PD0 A; 1AK6 A; 2FH4 A; 2VAC A; 2LLF A; 3EFO B; 3EGD A; 4LIZ A; 4JD2 H; 5KYX B; 1NPH A; 1P8Z G; 3EGX B; 3A5N S; 1H1V G; 1M2V A; 2LJ8 A; 2QTV A; #chains in the Genus database with same CATH homology 2FF6 G; 3CI5 G; 1JHW A; 1YVN G; 2FH2 A; 2VIK A; 3EH2 A; 1VKK A; 5KYW A; 2NUT B; 1VFQ A; 2XF1 A; 2MP4 A; 1UDM A; 1M4J A; 1WNJ A; 4KEE A; 5KYW B; 3DAW B; 1ESV S; 1AHQ A; 3FG7 A; 5HVK B; 3DA7 A; 1HQZ 1; 2FH1 A; 2MV2 A; 3L50 A; 4CBW G; 1CFY A; 4PKI G; 5A1M A; 2XFA A; 3CJB G; 1EQY S; 4PKH B; 1SVQ A; 4BEX 1; 1Q8G A; 2NUT A; 1PD1 A; 5KYU A; 2L72 A; 4Z94 G; 1WFS A; 1COF A; 4CBU G; 1P8X A; 5KYU B; 5KYY B; 2KVK A; 3CJC G; 1C0F S; 1QPV A; 1AK7 A; 2LXX A; 1TMW A; 1X67 A; 1M2O A; 1NLV G; 1KCQ A; 1T44 G; 4S10 C; 1RGI G; 5DD2 A; 4KED A; 2FH3 A; 1NMD G; 4PKG G; 5KYN A; 2FF3 A; 4CBX G; 1Q8X A; 3TU5 B; 3EG9 B; 2NUP B; 1YAG G; 4KEF A; 3EH1 A; 1T3Y A; 5IVU A; 2MOT A; 1SVR A; 1CNU A; 1NM1 G; 5KYY A; 3FFK A; 3CIP G; 1V6F A; 5FAF A; 2HD7 A; 2I2Q A; 3A5L S; 3Q2B A; 2VIL A; 1F7S A; 1TVJ A; 3EGD B; 2FGH A; 1PCX A; 1DEJ S; 5L6W C; 1MDU A; 1SVY A; 1T2L A; 2D8B A; 3EG9 A; 5FAE A; 2NUP A; 3FG6 A; 2W0I A; 1D4X G; 1M2V B; 3A5M S; 1C0G S; 3A5O S; 1J72 A; 1T3X A; 5HVK D; 1WM4 A; 3EFO A; 5KYX A; 1D0N A; 3FFN A; 3EGX A; 1PD0 A; 1AK6 A; 2FH4 A; 2VAC A; 2LLF A; 3EFO B; 3EGD A; 4LIZ A; 4JD2 H; 5KYX B; 1NPH A; 1P8Z G; 3EGX B; 3A5N S; 1H1V G; 1M2V A; 2LJ8 A; 2QTV A;
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