1H1VG

Gelsolin g4-g6/actin complex
Total Genus 87
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
331
structure length
327
Chain Sequence
MDDDGTGQKQIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRHGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGGQTAPASTRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQELLRVLRAQPVQVAEGSEPDGFWEALGGKAAYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRRTPITVVKQGFEPPSFVGWFLGWDDDYWS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Actin-binding
molecule keywords ACTIN
publication title The Calcium Activation of Gelsolin:Insights from the 3A Structure of the G4-G6/Actin Complex
pubmed doi rcsb
source organism Homo sapiens
total genus 87
structure length 327
sequence length 331
ec nomenclature
pdb deposition date 2002-07-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1h1vG01
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1h1vG03
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1h1vG02
1T3YA 3Q2BA 1QPVA 4PKHB 5IVUA 1DEJS 1TVJA 2FH1A 1M4JA 2LJ8A 5A1MA 5KYUB 1P8XA 5KYWB 1C0FS 1T44G 3FFNA 1KCQA 2FF6G 1YVNG 2VACA 1ESVS 5DD2A 2MOTA 4BEX1 3FFKA 4S10C 4LIZA 1J72A 1TMWA 2LXXA 1MDUA 1M2VA 1AHQA 1PD0A 2VILA 2KVKA 3EH2A 3EG9B 2FH2A 1C0GS 1AK6A 3EGXA 3TU5B 2NUTB 3A5NS 3A5OS 3A5MS 1AK7A 5KYUA 1RGIG 1CFYA 1T2LA 1VKKA 2LLFA 5KYWA 3FG6A 4KEEA 5HVKD 1X67A 2XF1A 2D8BA 1D4XG 4PKGG 4KEFA 5KYNA 2FH4A 5HVKB 1P8ZG 2I2QA 1Q8GA 1WNJA 4CBXG 5KYYB 5KYXB 1PCXA 2XFAA 1SVRA 2W0IA 5KYYA 2NUPB 1VFQA 2L72A 3EGDA 3EG9A 1F7SA 2HD7A 5L6WC 2MP4A 2NUTA 5FAFA 3CJCG 5FAEA 3EFOB 3FG7A 1NM1G 4CBWG 2FGHA 2QTVA 3CJBG 1NMDG 1EQYS 3EGDB 1CNUA 1V6FA 4CBUG 5KYXA 1YAGG 2FF3A 1D0NA 1UDMA 4Z94G 1COFA 2MV2A 2NUPA 1JHWA 1PD1A 1WFSA 1M2OA 3EH1A 1M2VB 1Q8XA 3A5LS 1NLVG 1NPHA 3CI5G 4JD2H 2FH3A 1T3XA 3EFOA 4KEDA 3L50A 1HQZ1 3CIPG 1H1VG 3EGXB 1SVQA 3DAWB 4PKIG 1SVYA 1WM4A 2VIKA
chains in the Genus database with same CATH superfamily
1T3YA 3Q2BA 1QPVA 4PKHB 5IVUA 1DEJS 1TVJA 2FH1A 1M4JA 2LJ8A 3DA7A 5A1MA 1P8XA 5KYUB 5KYWB 1C0FS 1T44G 3FFNA 1KCQA 2FF6G 1YVNG 2VACA 1ESVS 5DD2A 2MOTA 4BEX1 3FFKA 4S10C 4LIZA 1J72A 1TMWA 2LXXA 1MDUA 1M2VA 1AHQA 1PD0A 2VILA 2KVKA 3EH2A 3EG9B 2FH2A 1C0GS 1AK6A 3EGXA 3TU5B 2NUTB 3A5NS 3A5OS 3A5MS 1AK7A 5KYUA 1RGIG 1CFYA 1T2LA 1VKKA 2LLFA 5KYWA 3FG6A 4KEEA 5HVKD 1X67A 2XF1A 2D8BA 1D4XG 4PKGG 4KEFA 5KYNA 2FH4A 5HVKB 1P8ZG 2I2QA 1Q8GA 1WNJA 4CBXG 5KYYB 5KYXB 1PCXA 2XFAA 1SVRA 2W0IA 5KYYA 2NUPB 1VFQA 2L72A 3EGDA 3EG9A 1F7SA 2HD7A 5L6WC 2MP4A 2NUTA 5FAFA 3CJCG 5FAEA 3EFOB 3FG7A 1NM1G 4CBWG 2FGHA 2QTVA 3CJBG 1NMDG 1EQYS 3EGDB 1CNUA 1V6FA 4CBUG 5KYXA 1YAGG 2FF3A 1D0NA 1UDMA 4Z94G 1COFA 2MV2A 2NUPA 1JHWA 1PD1A 1WFSA 1M2OA 3EH1A 1M2VB 1Q8XA 3A5LS 1NLVG 1NPHA 3CI5G 4JD2H 2FH3A 1T3XA 3EFOA 4KEDA 3L50A 1HQZ1 3CIPG 1H1VG 3EGXB 1SVQA 3DAWB 4PKIG 1SVYA 1WM4A 2VIKA
chains in the Genus database with same CATH topology
1T3YA 3Q2BA 1QPVA 4PKHB 5IVUA 1DEJS 1TVJA 2FH1A 1M4JA 2LJ8A 3DA7A 5A1MA 1P8XA 5KYUB 5KYWB 1C0FS 1T44G 3FFNA 1KCQA 2FF6G 1YVNG 2VACA 1ESVS 5DD2A 2MOTA 4BEX1 3FFKA 4S10C 4LIZA 1J72A 1TMWA 2LXXA 1MDUA 1M2VA 1AHQA 1PD0A 2VILA 2KVKA 3EH2A 3EG9B 2FH2A 1C0GS 1AK6A 3EGXA 3TU5B 2NUTB 3A5NS 3A5OS 3A5MS 1AK7A 5KYUA 1RGIG 1CFYA 1T2LA 1VKKA 2LLFA 5KYWA 3FG6A 4KEEA 5HVKD 1X67A 2XF1A 2D8BA 1D4XG 4PKGG 4KEFA 5KYNA 2FH4A 5HVKB 1P8ZG 2I2QA 1Q8GA 1WNJA 4CBXG 5KYYB 5KYXB 1PCXA 2XFAA 1SVRA 2W0IA 5KYYA 2NUPB 1VFQA 2L72A 3EGDA 3EG9A 1F7SA 2HD7A 5L6WC 2MP4A 2NUTA 5FAFA 3CJCG 5FAEA 3EFOB 3FG7A 1NM1G 4CBWG 2FGHA 2QTVA 3CJBG 1NMDG 1EQYS 3EGDB 1CNUA 1V6FA 4CBUG 5KYXA 1YAGG 2FF3A 1D0NA 1UDMA 4Z94G 1COFA 2MV2A 2NUPA 1JHWA 1PD1A 1WFSA 1M2OA 3EH1A 1M2VB 1Q8XA 3A5LS 1NLVG 1NPHA 3CI5G 4JD2H 2FH3A 1T3XA 3EFOA 4KEDA 3L50A 1HQZ1 3CIPG 1H1VG 3EGXB 1SVQA 3DAWB 4PKIG 1SVYA 1WM4A 2VIKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T3Y A;  3Q2B A;  1QPV A;  4PKH B;  5IVU A;  1DEJ S;  1TVJ A;  2FH1 A;  1M4J A;  2LJ8 A;  5A1M A;  5KYU B;  1P8X A;  5KYW B;  1C0F S;  1T44 G;  3FFN A;  1KCQ A;  2FF6 G;  1YVN G;  2VAC A;  1ESV S;  5DD2 A;  2MOT A;  4BEX 1;  3FFK A;  4S10 C;  4LIZ A;  1J72 A;  1TMW A;  2LXX A;  1MDU A;  1M2V A;  1AHQ A;  1PD0 A;  2VIL A;  2KVK A;  3EH2 A;  3EG9 B;  2FH2 A;  1C0G S;  1AK6 A;  3EGX A;  3TU5 B;  2NUT B;  3A5N S;  3A5O S;  3A5M S;  1AK7 A;  5KYU A;  1RGI G;  1CFY A;  1T2L A;  1VKK A;  2LLF A;  5KYW A;  3FG6 A;  4KEE A;  5HVK D;  1X67 A;  2XF1 A;  2D8B A;  1D4X G;  4PKG G;  4KEF A;  5KYN A;  2FH4 A;  5HVK B;  1P8Z G;  2I2Q A;  1Q8G A;  1WNJ A;  4CBX G;  5KYY B;  5KYX B;  1PCX A;  2XFA A;  1SVR A;  2W0I A;  5KYY A;  2NUP B;  1VFQ A;  2L72 A;  3EGD A;  3EG9 A;  1F7S A;  2HD7 A;  5L6W C;  2MP4 A;  2NUT A;  5FAF A;  3CJC G;  5FAE A;  3EFO B;  3FG7 A;  1NM1 G;  4CBW G;  2FGH A;  2QTV A;  3CJB G;  1NMD G;  1EQY S;  3EGD B;  1CNU A;  1V6F A;  4CBU G;  5KYX A;  1YAG G;  2FF3 A;  1D0N A;  1UDM A;  4Z94 G;  1COF A;  2MV2 A;  2NUP A;  1JHW A;  1PD1 A;  1WFS A;  1M2O A;  3EH1 A;  1M2V B;  1Q8X A;  3A5L S;  1NLV G;  1NPH A;  3CI5 G;  4JD2 H;  2FH3 A;  1T3X A;  3EFO A;  4KED A;  3L50 A;  1HQZ 1;  3CIP G;  1H1V G;  3EGX B;  1SVQ A;  3DAW B;  4PKI G;  1SVY A;  1WM4 A;  2VIK A; 
#chains in the Genus database with same CATH topology
 1T3Y A;  3Q2B A;  1QPV A;  4PKH B;  5IVU A;  1DEJ S;  1TVJ A;  2FH1 A;  1M4J A;  2LJ8 A;  3DA7 A;  5A1M A;  1P8X A;  5KYU B;  5KYW B;  1C0F S;  1T44 G;  3FFN A;  1KCQ A;  2FF6 G;  1YVN G;  2VAC A;  1ESV S;  5DD2 A;  2MOT A;  4BEX 1;  3FFK A;  4S10 C;  4LIZ A;  1J72 A;  1TMW A;  2LXX A;  1MDU A;  1M2V A;  1AHQ A;  1PD0 A;  2VIL A;  2KVK A;  3EH2 A;  3EG9 B;  2FH2 A;  1C0G S;  1AK6 A;  3EGX A;  3TU5 B;  2NUT B;  3A5N S;  3A5O S;  3A5M S;  1AK7 A;  5KYU A;  1RGI G;  1CFY A;  1T2L A;  1VKK A;  2LLF A;  5KYW A;  3FG6 A;  4KEE A;  5HVK D;  1X67 A;  2XF1 A;  2D8B A;  1D4X G;  4PKG G;  4KEF A;  5KYN A;  2FH4 A;  5HVK B;  1P8Z G;  2I2Q A;  1Q8G A;  1WNJ A;  4CBX G;  5KYY B;  5KYX B;  1PCX A;  2XFA A;  1SVR A;  2W0I A;  5KYY A;  2NUP B;  1VFQ A;  2L72 A;  3EGD A;  3EG9 A;  1F7S A;  2HD7 A;  5L6W C;  2MP4 A;  2NUT A;  5FAF A;  3CJC G;  5FAE A;  3EFO B;  3FG7 A;  1NM1 G;  4CBW G;  2FGH A;  2QTV A;  3CJB G;  1NMD G;  1EQY S;  3EGD B;  1CNU A;  1V6F A;  4CBU G;  5KYX A;  1YAG G;  2FF3 A;  1D0N A;  1UDM A;  4Z94 G;  1COF A;  2MV2 A;  2NUP A;  1JHW A;  1PD1 A;  1WFS A;  1M2O A;  3EH1 A;  1M2V B;  1Q8X A;  3A5L S;  1NLV G;  1NPH A;  3CI5 G;  4JD2 H;  2FH3 A;  1T3X A;  3EFO A;  4KED A;  3L50 A;  1HQZ 1;  3CIP G;  1H1V G;  3EGX B;  1SVQ A;  3DAW B;  4PKI G;  1SVY A;  1WM4 A;  2VIK A; 
#chains in the Genus database with same CATH homology
 1T3Y A;  3Q2B A;  1QPV A;  4PKH B;  5IVU A;  1DEJ S;  1TVJ A;  2FH1 A;  1M4J A;  2LJ8 A;  3DA7 A;  5A1M A;  1P8X A;  5KYU B;  5KYW B;  1C0F S;  1T44 G;  3FFN A;  1KCQ A;  2FF6 G;  1YVN G;  2VAC A;  1ESV S;  5DD2 A;  2MOT A;  4BEX 1;  3FFK A;  4S10 C;  4LIZ A;  1J72 A;  1TMW A;  2LXX A;  1MDU A;  1M2V A;  1AHQ A;  1PD0 A;  2VIL A;  2KVK A;  3EH2 A;  3EG9 B;  2FH2 A;  1C0G S;  1AK6 A;  3EGX A;  3TU5 B;  2NUT B;  3A5N S;  3A5O S;  3A5M S;  1AK7 A;  5KYU A;  1RGI G;  1CFY A;  1T2L A;  1VKK A;  2LLF A;  5KYW A;  3FG6 A;  4KEE A;  5HVK D;  1X67 A;  2XF1 A;  2D8B A;  1D4X G;  4PKG G;  4KEF A;  5KYN A;  2FH4 A;  5HVK B;  1P8Z G;  2I2Q A;  1Q8G A;  1WNJ A;  4CBX G;  5KYY B;  5KYX B;  1PCX A;  2XFA A;  1SVR A;  2W0I A;  5KYY A;  2NUP B;  1VFQ A;  2L72 A;  3EGD A;  3EG9 A;  1F7S A;  2HD7 A;  5L6W C;  2MP4 A;  2NUT A;  5FAF A;  3CJC G;  5FAE A;  3EFO B;  3FG7 A;  1NM1 G;  4CBW G;  2FGH A;  2QTV A;  3CJB G;  1NMD G;  1EQY S;  3EGD B;  1CNU A;  1V6F A;  4CBU G;  5KYX A;  1YAG G;  2FF3 A;  1D0N A;  1UDM A;  4Z94 G;  1COF A;  2MV2 A;  2NUP A;  1JHW A;  1PD1 A;  1WFS A;  1M2O A;  3EH1 A;  1M2V B;  1Q8X A;  3A5L S;  1NLV G;  1NPH A;  3CI5 G;  4JD2 H;  2FH3 A;  1T3X A;  3EFO A;  4KED A;  3L50 A;  1HQZ 1;  3CIP G;  1H1V G;  3EGX B;  1SVQ A;  3DAW B;  4PKI G;  1SVY A;  1WM4 A;  2VIK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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