3TU5B

Actin complex with gelsolin segment 1 fused to cobl segment
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
132
structure length
132
Chain Sequence
SVVEHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASKLRKVAEQT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein/actin-binding protein
molecule keywords Actin, alpha skeletal muscle
publication title Structural States and dynamics of the d-loop in actin.
pubmed doi rcsb
source organism Homo sapiens
total genus 41
structure length 132
sequence length 132
ec nomenclature
pdb deposition date 2011-09-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00626 Gelsolin Gelsolin repeat
B PF02205 WH2 WH2 motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 3tu5B00
2VACA 1TMWA 1H1VG 5KYYA 5KYXB 5KYUB 2LJ8A 2FH3A 1SVQA 2MOTA 1NM1G 3A5NS 5KYWA 5FAEA 4PKHB 1M2VB 1M4JA 1SVYA 3EGXB 2FGHA 1EQYS 1AK7A 1C0FS 3CIPG 3EG9A 4BEX1 3CI5G 1F7SA 1COFA 3CJBG 4LIZA 2NUTA 1Q8XA 1SVRA 1WFSA 5IVUA 4CBUG 1UDMA 1AK6A 3CJCG 3EFOA 1WNJA 1KCQA 1JHWA 1VFQA 1RGIG 3A5LS 4PKIG 3TU5B 4Z94G 2NUPB 4JD2H 5FAFA 1DEJS 5A1MA 5KYXA 1VKKA 4KEDA 1T3YA 1YAGG 5KYUA 2MV2A 2FH2A 1CNUA 2FH1A 2D8BA 1T3XA 1V6FA 1PD0A 1T44G 2VIKA 1Q8GA 2VILA 1J72A 1NMDG 3EH1A 5KYNA 4KEEA 1PD1A 1D4XG 2HD7A 3EGDB 5HVKB 3L50A 5HVKD 1P8ZG 5DD2A 1TVJA 2L72A 3FFKA 1C0GS 1X67A 1D0NA 2FF3A 2KVKA 1M2OA 4CBXG 1QPVA 2FH4A 1T2LA 5KYYB 1M2VA 3FG6A 3EH2A 1P8XA 4KEFA 1YVNG 1CFYA 2XF1A 3Q2BA 5KYWB 3A5MS 3EGXA 2XFAA 4S10C 1WM4A 2FF6G 2MP4A 4CBWG 4PKGG 3DAWB 3EG9B 1PCXA 1MDUA 2W0IA 3EGDA 2NUTB 2LLFA 2LXXA 3FFNA 2I2QA 3EFOB 2NUPA 1HQZ1 3A5OS 5L6WC 3FG7A 2QTVA 1NPHA 1ESVS 1AHQA 1NLVG
chains in the Genus database with same CATH superfamily
2VACA 1TMWA 1H1VG 5KYYA 5KYXB 5KYUB 2LJ8A 2FH3A 1SVQA 2MOTA 1NM1G 3A5NS 5KYWA 5FAEA 4PKHB 1M2VB 1M4JA 1SVYA 3EGXB 2FGHA 1EQYS 1AK7A 1C0FS 3CIPG 3EG9A 4BEX1 3CI5G 1F7SA 1COFA 3CJBG 4LIZA 2NUTA 1Q8XA 1SVRA 1WFSA 5IVUA 4CBUG 1UDMA 1AK6A 3CJCG 3EFOA 1WNJA 1KCQA 1JHWA 1VFQA 1RGIG 3A5LS 4PKIG 3TU5B 4Z94G 2NUPB 4JD2H 5FAFA 1DEJS 5A1MA 5KYXA 1VKKA 4KEDA 1T3YA 1YAGG 5KYUA 2MV2A 2FH2A 1CNUA 2FH1A 2D8BA 1T3XA 1V6FA 1PD0A 1T44G 2VIKA 1Q8GA 2VILA 1J72A 1NMDG 3EH1A 5KYNA 4KEEA 1PD1A 1D4XG 2HD7A 3EGDB 5HVKB 3L50A 5HVKD 1P8ZG 5DD2A 1TVJA 2L72A 3FFKA 1C0GS 1X67A 1D0NA 3DA7A 2FF3A 2KVKA 1M2OA 4CBXG 1QPVA 2FH4A 1T2LA 5KYYB 1M2VA 3FG6A 3EH2A 1P8XA 4KEFA 1YVNG 1CFYA 2XF1A 3Q2BA 5KYWB 3A5MS 3EGXA 2XFAA 4S10C 1WM4A 2FF6G 2MP4A 4CBWG 4PKGG 3DAWB 3EG9B 1PCXA 1MDUA 2W0IA 3EGDA 2NUTB 2LLFA 2LXXA 3FFNA 2I2QA 3EFOB 2NUPA 1HQZ1 3A5OS 5L6WC 3FG7A 2QTVA 1NPHA 1ESVS 1AHQA 1NLVG
chains in the Genus database with same CATH topology
2VACA 1TMWA 1H1VG 5KYYA 5KYXB 5KYUB 2LJ8A 2FH3A 1SVQA 2MOTA 1NM1G 3A5NS 5KYWA 5FAEA 4PKHB 1M2VB 1M4JA 1SVYA 3EGXB 2FGHA 1EQYS 1AK7A 1C0FS 3CIPG 3EG9A 4BEX1 3CI5G 1F7SA 1COFA 3CJBG 4LIZA 2NUTA 1Q8XA 1SVRA 1WFSA 5IVUA 4CBUG 1UDMA 1AK6A 3CJCG 3EFOA 1WNJA 1KCQA 1JHWA 1VFQA 1RGIG 3A5LS 4PKIG 3TU5B 4Z94G 2NUPB 4JD2H 5FAFA 1DEJS 5A1MA 5KYXA 1VKKA 4KEDA 1T3YA 1YAGG 5KYUA 2MV2A 2FH2A 1CNUA 2FH1A 2D8BA 1T3XA 1V6FA 1PD0A 1T44G 2VIKA 1Q8GA 2VILA 1J72A 1NMDG 3EH1A 5KYNA 4KEEA 1PD1A 1D4XG 2HD7A 3EGDB 5HVKB 3L50A 5HVKD 1P8ZG 5DD2A 1TVJA 2L72A 3FFKA 1C0GS 1X67A 1D0NA 3DA7A 2FF3A 2KVKA 1M2OA 4CBXG 1QPVA 2FH4A 1T2LA 5KYYB 1M2VA 3FG6A 3EH2A 1P8XA 4KEFA 1YVNG 1CFYA 2XF1A 3Q2BA 5KYWB 3A5MS 3EGXA 2XFAA 4S10C 1WM4A 2FF6G 2MP4A 4CBWG 4PKGG 3DAWB 3EG9B 1PCXA 1MDUA 2W0IA 3EGDA 2NUTB 2LLFA 2LXXA 3FFNA 2I2QA 3EFOB 2NUPA 1HQZ1 3A5OS 5L6WC 3FG7A 2QTVA 1NPHA 1ESVS 1AHQA 1NLVG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VAC A;  1TMW A;  1H1V G;  5KYY A;  5KYX B;  5KYU B;  2LJ8 A;  2FH3 A;  1SVQ A;  2MOT A;  1NM1 G;  3A5N S;  5KYW A;  5FAE A;  4PKH B;  1M2V B;  1M4J A;  1SVY A;  3EGX B;  2FGH A;  1EQY S;  1AK7 A;  1C0F S;  3CIP G;  3EG9 A;  4BEX 1;  3CI5 G;  1F7S A;  1COF A;  3CJB G;  4LIZ A;  2NUT A;  1Q8X A;  1SVR A;  1WFS A;  5IVU A;  4CBU G;  1UDM A;  1AK6 A;  3CJC G;  3EFO A;  1WNJ A;  1KCQ A;  1JHW A;  1VFQ A;  1RGI G;  3A5L S;  4PKI G;  3TU5 B;  4Z94 G;  2NUP B;  4JD2 H;  5FAF A;  1DEJ S;  5A1M A;  5KYX A;  1VKK A;  4KED A;  1T3Y A;  1YAG G;  5KYU A;  2MV2 A;  2FH2 A;  1CNU A;  2FH1 A;  2D8B A;  1T3X A;  1V6F A;  1PD0 A;  1T44 G;  2VIK A;  1Q8G A;  2VIL A;  1J72 A;  1NMD G;  3EH1 A;  5KYN A;  4KEE A;  1PD1 A;  1D4X G;  2HD7 A;  3EGD B;  5HVK B;  3L50 A;  5HVK D;  1P8Z G;  5DD2 A;  1TVJ A;  2L72 A;  3FFK A;  1C0G S;  1X67 A;  1D0N A;  2FF3 A;  2KVK A;  1M2O A;  4CBX G;  1QPV A;  2FH4 A;  1T2L A;  5KYY B;  1M2V A;  3FG6 A;  3EH2 A;  1P8X A;  4KEF A;  1YVN G;  1CFY A;  2XF1 A;  3Q2B A;  5KYW B;  3A5M S;  3EGX A;  2XFA A;  4S10 C;  1WM4 A;  2FF6 G;  2MP4 A;  4CBW G;  4PKG G;  3DAW B;  3EG9 B;  1PCX A;  1MDU A;  2W0I A;  3EGD A;  2NUT B;  2LLF A;  2LXX A;  3FFN A;  2I2Q A;  3EFO B;  2NUP A;  1HQZ 1;  3A5O S;  5L6W C;  3FG7 A;  2QTV A;  1NPH A;  1ESV S;  1AHQ A;  1NLV G; 
#chains in the Genus database with same CATH topology
 2VAC A;  1TMW A;  1H1V G;  5KYY A;  5KYX B;  5KYU B;  2LJ8 A;  2FH3 A;  1SVQ A;  2MOT A;  1NM1 G;  3A5N S;  5KYW A;  5FAE A;  4PKH B;  1M2V B;  1M4J A;  1SVY A;  3EGX B;  2FGH A;  1EQY S;  1AK7 A;  1C0F S;  3CIP G;  3EG9 A;  4BEX 1;  3CI5 G;  1F7S A;  1COF A;  3CJB G;  4LIZ A;  2NUT A;  1Q8X A;  1SVR A;  1WFS A;  5IVU A;  4CBU G;  1UDM A;  1AK6 A;  3CJC G;  3EFO A;  1WNJ A;  1KCQ A;  1JHW A;  1VFQ A;  1RGI G;  3A5L S;  4PKI G;  3TU5 B;  4Z94 G;  2NUP B;  4JD2 H;  5FAF A;  1DEJ S;  5A1M A;  5KYX A;  1VKK A;  4KED A;  1T3Y A;  1YAG G;  5KYU A;  2MV2 A;  2FH2 A;  1CNU A;  2FH1 A;  2D8B A;  1T3X A;  1V6F A;  1PD0 A;  1T44 G;  2VIK A;  1Q8G A;  2VIL A;  1J72 A;  1NMD G;  3EH1 A;  5KYN A;  4KEE A;  1PD1 A;  1D4X G;  2HD7 A;  3EGD B;  5HVK B;  3L50 A;  5HVK D;  1P8Z G;  5DD2 A;  1TVJ A;  2L72 A;  3FFK A;  1C0G S;  1X67 A;  1D0N A;  3DA7 A;  2FF3 A;  2KVK A;  1M2O A;  4CBX G;  1QPV A;  2FH4 A;  1T2L A;  5KYY B;  1M2V A;  3FG6 A;  3EH2 A;  1P8X A;  4KEF A;  1YVN G;  1CFY A;  2XF1 A;  3Q2B A;  5KYW B;  3A5M S;  3EGX A;  2XFA A;  4S10 C;  1WM4 A;  2FF6 G;  2MP4 A;  4CBW G;  4PKG G;  3DAW B;  3EG9 B;  1PCX A;  1MDU A;  2W0I A;  3EGD A;  2NUT B;  2LLF A;  2LXX A;  3FFN A;  2I2Q A;  3EFO B;  2NUP A;  1HQZ 1;  3A5O S;  5L6W C;  3FG7 A;  2QTV A;  1NPH A;  1ESV S;  1AHQ A;  1NLV G; 
#chains in the Genus database with same CATH homology
 2VAC A;  1TMW A;  1H1V G;  5KYY A;  5KYX B;  5KYU B;  2LJ8 A;  2FH3 A;  1SVQ A;  2MOT A;  1NM1 G;  3A5N S;  5KYW A;  5FAE A;  4PKH B;  1M2V B;  1M4J A;  1SVY A;  3EGX B;  2FGH A;  1EQY S;  1AK7 A;  1C0F S;  3CIP G;  3EG9 A;  4BEX 1;  3CI5 G;  1F7S A;  1COF A;  3CJB G;  4LIZ A;  2NUT A;  1Q8X A;  1SVR A;  1WFS A;  5IVU A;  4CBU G;  1UDM A;  1AK6 A;  3CJC G;  3EFO A;  1WNJ A;  1KCQ A;  1JHW A;  1VFQ A;  1RGI G;  3A5L S;  4PKI G;  3TU5 B;  4Z94 G;  2NUP B;  4JD2 H;  5FAF A;  1DEJ S;  5A1M A;  5KYX A;  1VKK A;  4KED A;  1T3Y A;  1YAG G;  5KYU A;  2MV2 A;  2FH2 A;  1CNU A;  2FH1 A;  2D8B A;  1T3X A;  1V6F A;  1PD0 A;  1T44 G;  2VIK A;  1Q8G A;  2VIL A;  1J72 A;  1NMD G;  3EH1 A;  5KYN A;  4KEE A;  1PD1 A;  1D4X G;  2HD7 A;  3EGD B;  5HVK B;  3L50 A;  5HVK D;  1P8Z G;  5DD2 A;  1TVJ A;  2L72 A;  3FFK A;  1C0G S;  1X67 A;  1D0N A;  3DA7 A;  2FF3 A;  2KVK A;  1M2O A;  4CBX G;  1QPV A;  2FH4 A;  1T2L A;  5KYY B;  1M2V A;  3FG6 A;  3EH2 A;  1P8X A;  4KEF A;  1YVN G;  1CFY A;  2XF1 A;  3Q2B A;  5KYW B;  3A5M S;  3EGX A;  2XFA A;  4S10 C;  1WM4 A;  2FF6 G;  2MP4 A;  4CBW G;  4PKG G;  3DAW B;  3EG9 B;  1PCX A;  1MDU A;  2W0I A;  3EGD A;  2NUT B;  2LLF A;  2LXX A;  3FFN A;  2I2Q A;  3EFO B;  2NUP A;  1HQZ 1;  3A5O S;  5L6W C;  3FG7 A;  2QTV A;  1NPH A;  1ESV S;  1AHQ A;  1NLV G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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