1UDMA

Solution structure of coactosin-like protein (cofilin family) from mus musculus
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
149
structure length
149
Chain Sequence
GSEGAATMATKIDKEACRAAYNLVRDDGSAVIWVTFRYDGATIVPGDQGADYQHFIQQCTDDVRLFAFVRFTTGDAMSKRSKFALITWIGEDVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELEEDFIRSELKKAGGANYDAQSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Coactosin-like protein
publication title NMR solution structures of actin depolymerizing factor homology domains.
pubmed doi rcsb
source organism Mus musculus
total genus 27
structure length 149
sequence length 149
ec nomenclature
pdb deposition date 2003-05-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1udmA00
3CI5G 3L50A 1VFQA 3DAWB 3EFOA 1M4JA 2NUTB 2FGHA 1CFYA 1AHQA 4Z94G 1HQZ1 1YVNG 1UDMA 1M2VB 2FH2A 5HVKB 1C0FS 1CNUA 3EGXA 5FAEA 1P8ZG 5KYWA 1NLVG 1RGIG 5KYXB 1M2VA 1T3XA 1WFSA 1P8XA 2MV2A 5L6WC 3A5MS 3CIPG 1NMDG 3A5LS 1ESVS 1PD0A 1AK6A 1DEJS 2FH4A 1TMWA 2NUPB 2I2QA 3EH1A 4CBXG 2D8BA 2FF3A 1H1VG 1KCQA 4JD2H 2NUPA 2LJ8A 4CBWG 2NUTA 1Q8GA 1COFA 3EG9B 2MP4A 2LXXA 2KVKA 4KEDA 1C0GS 4BEX1 4LIZA 1J72A 1JHWA 4PKHB 1MDUA 3A5NS 3EG9A 2XF1A 2LLFA 1SVRA 3EGDB 5KYXA 5KYNA 1V6FA 1Q8XA 2FH3A 5KYUB 2VACA 2MOTA 4PKIG 1TVJA 3CJBG 3EGDA 2FF6G 3FG7A 1M2OA 4KEFA 5IVUA 1PCXA 2XFAA 1WM4A 2L72A 5HVKD 5DD2A 4KEEA 3Q2BA 5A1MA 5KYYB 1SVYA 4PKGG 1D0NA 4S10C 2VIKA 4CBUG 1WNJA 3CJCG 3FFNA 1NM1G 5KYYA 1SVQA 1T3YA 3EGXB 1NPHA 1D4XG 2FH1A 3TU5B 2W0IA 3FG6A 1AK7A 5KYWB 1PD1A 1T2LA 2VILA 1YAGG 5FAFA 5KYUA 3EH2A 3FFKA 1EQYS 2HD7A 1F7SA 1X67A 1T44G 2QTVA 3A5OS 3EFOB 1VKKA 1QPVA
chains in the Genus database with same CATH superfamily
3CI5G 3L50A 1VFQA 3DAWB 3EFOA 1M4JA 2NUTB 2FGHA 1CFYA 1AHQA 4Z94G 1HQZ1 1YVNG 1UDMA 1M2VB 2FH2A 5HVKB 1C0FS 1CNUA 3EGXA 5FAEA 1P8ZG 5KYWA 1NLVG 1RGIG 5KYXB 1M2VA 1T3XA 1WFSA 1P8XA 2MV2A 5L6WC 3DA7A 3A5MS 3CIPG 1NMDG 3A5LS 1ESVS 1PD0A 1AK6A 1DEJS 2FH4A 1TMWA 2NUPB 2I2QA 3EH1A 4CBXG 2D8BA 2FF3A 1H1VG 1KCQA 4JD2H 2NUPA 2LJ8A 4CBWG 2NUTA 1Q8GA 1COFA 3EG9B 2MP4A 2LXXA 2KVKA 4KEDA 1C0GS 4BEX1 4LIZA 1J72A 1JHWA 4PKHB 1MDUA 3A5NS 3EG9A 2XF1A 2LLFA 1SVRA 3EGDB 5KYXA 5KYNA 1V6FA 1Q8XA 2FH3A 5KYUB 2VACA 2MOTA 4PKIG 1TVJA 3CJBG 3EGDA 2FF6G 3FG7A 1M2OA 4KEFA 5IVUA 1PCXA 2XFAA 1WM4A 2L72A 5HVKD 5DD2A 4KEEA 3Q2BA 5A1MA 5KYYB 1SVYA 4PKGG 1D0NA 4S10C 2VIKA 4CBUG 1WNJA 3CJCG 3FFNA 1NM1G 5KYYA 1SVQA 1T3YA 3EGXB 1NPHA 1D4XG 2FH1A 3TU5B 2W0IA 3FG6A 1AK7A 5KYWB 1PD1A 1T2LA 2VILA 1YAGG 5FAFA 5KYUA 3EH2A 3FFKA 1EQYS 2HD7A 1F7SA 1X67A 1T44G 2QTVA 3A5OS 3EFOB 1VKKA 1QPVA
chains in the Genus database with same CATH topology
3CI5G 3L50A 1VFQA 3DAWB 3EFOA 1M4JA 2NUTB 2FGHA 1CFYA 1AHQA 4Z94G 1HQZ1 1YVNG 1UDMA 1M2VB 2FH2A 5HVKB 1C0FS 1CNUA 3EGXA 5FAEA 1P8ZG 5KYWA 1NLVG 1RGIG 5KYXB 1M2VA 1T3XA 1WFSA 1P8XA 2MV2A 5L6WC 3DA7A 3A5MS 3CIPG 1NMDG 3A5LS 1ESVS 1PD0A 1AK6A 1DEJS 2FH4A 1TMWA 2NUPB 2I2QA 3EH1A 4CBXG 2D8BA 2FF3A 1H1VG 1KCQA 4JD2H 2NUPA 2LJ8A 4CBWG 2NUTA 1Q8GA 1COFA 3EG9B 2MP4A 2LXXA 2KVKA 4KEDA 1C0GS 4BEX1 4LIZA 1J72A 1JHWA 4PKHB 1MDUA 3A5NS 3EG9A 2XF1A 2LLFA 1SVRA 3EGDB 5KYXA 5KYNA 1V6FA 1Q8XA 2FH3A 5KYUB 2VACA 2MOTA 4PKIG 1TVJA 3CJBG 3EGDA 2FF6G 3FG7A 1M2OA 4KEFA 5IVUA 1PCXA 2XFAA 1WM4A 2L72A 5HVKD 5DD2A 4KEEA 3Q2BA 5A1MA 5KYYB 1SVYA 4PKGG 1D0NA 4S10C 2VIKA 4CBUG 1WNJA 3CJCG 3FFNA 1NM1G 5KYYA 1SVQA 1T3YA 3EGXB 1NPHA 1D4XG 2FH1A 3TU5B 2W0IA 3FG6A 1AK7A 5KYWB 1PD1A 1T2LA 2VILA 1YAGG 5FAFA 5KYUA 3EH2A 3FFKA 1EQYS 2HD7A 1F7SA 1X67A 1T44G 2QTVA 3A5OS 3EFOB 1VKKA 1QPVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CI5 G;  3L50 A;  1VFQ A;  3DAW B;  3EFO A;  1M4J A;  2NUT B;  2FGH A;  1CFY A;  1AHQ A;  4Z94 G;  1HQZ 1;  1YVN G;  1UDM A;  1M2V B;  2FH2 A;  5HVK B;  1C0F S;  1CNU A;  3EGX A;  5FAE A;  1P8Z G;  5KYW A;  1NLV G;  1RGI G;  5KYX B;  1M2V A;  1T3X A;  1WFS A;  1P8X A;  2MV2 A;  5L6W C;  3A5M S;  3CIP G;  1NMD G;  3A5L S;  1ESV S;  1PD0 A;  1AK6 A;  1DEJ S;  2FH4 A;  1TMW A;  2NUP B;  2I2Q A;  3EH1 A;  4CBX G;  2D8B A;  2FF3 A;  1H1V G;  1KCQ A;  4JD2 H;  2NUP A;  2LJ8 A;  4CBW G;  2NUT A;  1Q8G A;  1COF A;  3EG9 B;  2MP4 A;  2LXX A;  2KVK A;  4KED A;  1C0G S;  4BEX 1;  4LIZ A;  1J72 A;  1JHW A;  4PKH B;  1MDU A;  3A5N S;  3EG9 A;  2XF1 A;  2LLF A;  1SVR A;  3EGD B;  5KYX A;  5KYN A;  1V6F A;  1Q8X A;  2FH3 A;  5KYU B;  2VAC A;  2MOT A;  4PKI G;  1TVJ A;  3CJB G;  3EGD A;  2FF6 G;  3FG7 A;  1M2O A;  4KEF A;  5IVU A;  1PCX A;  2XFA A;  1WM4 A;  2L72 A;  5HVK D;  5DD2 A;  4KEE A;  3Q2B A;  5A1M A;  5KYY B;  1SVY A;  4PKG G;  1D0N A;  4S10 C;  2VIK A;  4CBU G;  1WNJ A;  3CJC G;  3FFN A;  1NM1 G;  5KYY A;  1SVQ A;  1T3Y A;  3EGX B;  1NPH A;  1D4X G;  2FH1 A;  3TU5 B;  2W0I A;  3FG6 A;  1AK7 A;  5KYW B;  1PD1 A;  1T2L A;  2VIL A;  1YAG G;  5FAF A;  5KYU A;  3EH2 A;  3FFK A;  1EQY S;  2HD7 A;  1F7S A;  1X67 A;  1T44 G;  2QTV A;  3A5O S;  3EFO B;  1VKK A;  1QPV A; 
#chains in the Genus database with same CATH topology
 3CI5 G;  3L50 A;  1VFQ A;  3DAW B;  3EFO A;  1M4J A;  2NUT B;  2FGH A;  1CFY A;  1AHQ A;  4Z94 G;  1HQZ 1;  1YVN G;  1UDM A;  1M2V B;  2FH2 A;  5HVK B;  1C0F S;  1CNU A;  3EGX A;  5FAE A;  1P8Z G;  5KYW A;  1NLV G;  1RGI G;  5KYX B;  1M2V A;  1T3X A;  1WFS A;  1P8X A;  2MV2 A;  5L6W C;  3DA7 A;  3A5M S;  3CIP G;  1NMD G;  3A5L S;  1ESV S;  1PD0 A;  1AK6 A;  1DEJ S;  2FH4 A;  1TMW A;  2NUP B;  2I2Q A;  3EH1 A;  4CBX G;  2D8B A;  2FF3 A;  1H1V G;  1KCQ A;  4JD2 H;  2NUP A;  2LJ8 A;  4CBW G;  2NUT A;  1Q8G A;  1COF A;  3EG9 B;  2MP4 A;  2LXX A;  2KVK A;  4KED A;  1C0G S;  4BEX 1;  4LIZ A;  1J72 A;  1JHW A;  4PKH B;  1MDU A;  3A5N S;  3EG9 A;  2XF1 A;  2LLF A;  1SVR A;  3EGD B;  5KYX A;  5KYN A;  1V6F A;  1Q8X A;  2FH3 A;  5KYU B;  2VAC A;  2MOT A;  4PKI G;  1TVJ A;  3CJB G;  3EGD A;  2FF6 G;  3FG7 A;  1M2O A;  4KEF A;  5IVU A;  1PCX A;  2XFA A;  1WM4 A;  2L72 A;  5HVK D;  5DD2 A;  4KEE A;  3Q2B A;  5A1M A;  5KYY B;  1SVY A;  4PKG G;  1D0N A;  4S10 C;  2VIK A;  4CBU G;  1WNJ A;  3CJC G;  3FFN A;  1NM1 G;  5KYY A;  1SVQ A;  1T3Y A;  3EGX B;  1NPH A;  1D4X G;  2FH1 A;  3TU5 B;  2W0I A;  3FG6 A;  1AK7 A;  5KYW B;  1PD1 A;  1T2L A;  2VIL A;  1YAG G;  5FAF A;  5KYU A;  3EH2 A;  3FFK A;  1EQY S;  2HD7 A;  1F7S A;  1X67 A;  1T44 G;  2QTV A;  3A5O S;  3EFO B;  1VKK A;  1QPV A; 
#chains in the Genus database with same CATH homology
 3CI5 G;  3L50 A;  1VFQ A;  3DAW B;  3EFO A;  1M4J A;  2NUT B;  2FGH A;  1CFY A;  1AHQ A;  4Z94 G;  1HQZ 1;  1YVN G;  1UDM A;  1M2V B;  2FH2 A;  5HVK B;  1C0F S;  1CNU A;  3EGX A;  5FAE A;  1P8Z G;  5KYW A;  1NLV G;  1RGI G;  5KYX B;  1M2V A;  1T3X A;  1WFS A;  1P8X A;  2MV2 A;  5L6W C;  3DA7 A;  3A5M S;  3CIP G;  1NMD G;  3A5L S;  1ESV S;  1PD0 A;  1AK6 A;  1DEJ S;  2FH4 A;  1TMW A;  2NUP B;  2I2Q A;  3EH1 A;  4CBX G;  2D8B A;  2FF3 A;  1H1V G;  1KCQ A;  4JD2 H;  2NUP A;  2LJ8 A;  4CBW G;  2NUT A;  1Q8G A;  1COF A;  3EG9 B;  2MP4 A;  2LXX A;  2KVK A;  4KED A;  1C0G S;  4BEX 1;  4LIZ A;  1J72 A;  1JHW A;  4PKH B;  1MDU A;  3A5N S;  3EG9 A;  2XF1 A;  2LLF A;  1SVR A;  3EGD B;  5KYX A;  5KYN A;  1V6F A;  1Q8X A;  2FH3 A;  5KYU B;  2VAC A;  2MOT A;  4PKI G;  1TVJ A;  3CJB G;  3EGD A;  2FF6 G;  3FG7 A;  1M2O A;  4KEF A;  5IVU A;  1PCX A;  2XFA A;  1WM4 A;  2L72 A;  5HVK D;  5DD2 A;  4KEE A;  3Q2B A;  5A1M A;  5KYY B;  1SVY A;  4PKG G;  1D0N A;  4S10 C;  2VIK A;  4CBU G;  1WNJ A;  3CJC G;  3FFN A;  1NM1 G;  5KYY A;  1SVQ A;  1T3Y A;  3EGX B;  1NPH A;  1D4X G;  2FH1 A;  3TU5 B;  2W0I A;  3FG6 A;  1AK7 A;  5KYW B;  1PD1 A;  1T2L A;  2VIL A;  1YAG G;  5FAF A;  5KYU A;  3EH2 A;  3FFK A;  1EQY S;  2HD7 A;  1F7S A;  1X67 A;  1T44 G;  2QTV A;  3A5O S;  3EFO B;  1VKK A;  1QPV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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