1F7SA

Crystal structure of adf1 from arabidopsis thaliana
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
124
structure length
124
Chain Sequence
ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
molecule keywords ACTIN DEPOLYMERIZING FACTOR (ADF)
publication title A comparative structural analysis of the ADF/cofilin family.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 36
structure length 124
sequence length 124
ec nomenclature
pdb deposition date 2000-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1f7sA00
5KYXB 1C0GS 1SVRA 2XF1A 3CIPG 2KVKA 4KEDA 5KYYA 1PD1A 1AK7A 3EGXA 3L50A 4CBXG 2FH4A 1C0FS 2FGHA 3EG9B 1X67A 1F7SA 1WM4A 3EH2A 1T3XA 3EG9A 3A5NS 3CJCG 2I2QA 1KCQA 1PD0A 2MP4A 5KYUA 1SVYA 1VKKA 2LJ8A 3A5OS 1M2OA 2L72A 3DAWB 1YVNG 2FH2A 1EQYS 1RGIG 3EGXB 4PKHB 1CFYA 3FFKA 1V6FA 1J72A 1TVJA 1DEJS 2W0IA 3CJBG 1WFSA 1M4JA 2QTVA 4CBUG 5KYWA 2VACA 5HVKD 5A1MA 5KYUB 1TMWA 2XFAA 2NUPA 1NPHA 4BEX1 2NUTA 2MOTA 1D0NA 1SVQA 3EFOA 4KEEA 1M2VA 5FAFA 5L6WC 1AK6A 2VIKA 1MDUA 4LIZA 5DD2A 5IVUA 5KYWB 2HD7A 1QPVA 1WNJA 3EGDB 1P8ZG 1NM1G 1T2LA 1COFA 2NUPB 1D4XG 1NMDG 4KEFA 2NUTB 4PKGG 2D8BA 4PKIG 3EGDA 3EFOB 1YAGG 3Q2BA 1M2VB 1NLVG 2FF3A 3FFNA 4CBWG 2VILA 2FH3A 1T44G 4Z94G 1Q8XA 1H1VG 3A5LS 1Q8GA 5FAEA 1CNUA 2MV2A 3FG7A 3CI5G 5HVKB 5KYXA 1AHQA 1PCXA 3EH1A 1HQZ1 4S10C 2FF6G 2FH1A 3A5MS 1P8XA 3TU5B 2LXXA 1UDMA 1JHWA 3FG6A 5KYNA 2LLFA 4JD2H 1ESVS 1VFQA 1T3YA 5KYYB
chains in the Genus database with same CATH superfamily
5KYXB 1C0GS 1SVRA 2XF1A 3CIPG 2KVKA 4KEDA 5KYYA 1PD1A 3DA7A 1AK7A 3EGXA 3L50A 4CBXG 2FH4A 1C0FS 2FGHA 3EG9B 1X67A 1F7SA 1WM4A 3EH2A 1T3XA 3EG9A 3A5NS 3CJCG 2I2QA 1KCQA 1PD0A 2MP4A 5KYUA 1SVYA 1VKKA 2LJ8A 3A5OS 1M2OA 2L72A 3DAWB 1YVNG 2FH2A 1EQYS 1RGIG 3EGXB 4PKHB 1CFYA 3FFKA 1V6FA 1J72A 1TVJA 1DEJS 2W0IA 3CJBG 1WFSA 1M4JA 2QTVA 4CBUG 5KYWA 2VACA 5HVKD 5A1MA 5KYUB 1TMWA 2XFAA 2NUPA 1NPHA 4BEX1 2NUTA 2MOTA 1D0NA 1SVQA 3EFOA 4KEEA 1M2VA 5FAFA 5L6WC 1AK6A 2VIKA 1MDUA 4LIZA 5DD2A 5IVUA 5KYWB 2HD7A 1QPVA 1WNJA 3EGDB 1P8ZG 1NM1G 1T2LA 1COFA 2NUPB 1D4XG 1NMDG 4KEFA 2NUTB 4PKGG 2D8BA 4PKIG 3EGDA 3EFOB 1YAGG 3Q2BA 1M2VB 1NLVG 2FF3A 3FFNA 4CBWG 2VILA 2FH3A 1T44G 4Z94G 1Q8XA 1H1VG 3A5LS 1Q8GA 5FAEA 1CNUA 2MV2A 3FG7A 3CI5G 5HVKB 5KYXA 1AHQA 1PCXA 3EH1A 1HQZ1 4S10C 2FF6G 2FH1A 3A5MS 1P8XA 3TU5B 2LXXA 1UDMA 1JHWA 3FG6A 5KYNA 2LLFA 4JD2H 1ESVS 1VFQA 1T3YA 5KYYB
chains in the Genus database with same CATH topology
5KYXB 1C0GS 1SVRA 2XF1A 3CIPG 2KVKA 4KEDA 5KYYA 1PD1A 3DA7A 1AK7A 3EGXA 3L50A 4CBXG 2FH4A 1C0FS 2FGHA 3EG9B 1X67A 1F7SA 1WM4A 3EH2A 1T3XA 3EG9A 3A5NS 3CJCG 2I2QA 1KCQA 1PD0A 2MP4A 5KYUA 1SVYA 1VKKA 2LJ8A 3A5OS 1M2OA 2L72A 3DAWB 1YVNG 2FH2A 1EQYS 1RGIG 3EGXB 4PKHB 1CFYA 3FFKA 1V6FA 1J72A 1TVJA 1DEJS 2W0IA 3CJBG 1WFSA 1M4JA 2QTVA 4CBUG 5KYWA 2VACA 5HVKD 5A1MA 5KYUB 1TMWA 2XFAA 2NUPA 1NPHA 4BEX1 2NUTA 2MOTA 1D0NA 1SVQA 3EFOA 4KEEA 1M2VA 5FAFA 5L6WC 1AK6A 2VIKA 1MDUA 4LIZA 5DD2A 5IVUA 5KYWB 2HD7A 1QPVA 1WNJA 3EGDB 1P8ZG 1NM1G 1T2LA 1COFA 2NUPB 1D4XG 1NMDG 4KEFA 2NUTB 4PKGG 2D8BA 4PKIG 3EGDA 3EFOB 1YAGG 3Q2BA 1M2VB 1NLVG 2FF3A 3FFNA 4CBWG 2VILA 2FH3A 1T44G 4Z94G 1Q8XA 1H1VG 3A5LS 1Q8GA 5FAEA 1CNUA 2MV2A 3FG7A 3CI5G 5HVKB 5KYXA 1AHQA 1PCXA 3EH1A 1HQZ1 4S10C 2FF6G 2FH1A 3A5MS 1P8XA 3TU5B 2LXXA 1UDMA 1JHWA 3FG6A 5KYNA 2LLFA 4JD2H 1ESVS 1VFQA 1T3YA 5KYYB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KYX B;  1C0G S;  1SVR A;  2XF1 A;  3CIP G;  2KVK A;  4KED A;  5KYY A;  1PD1 A;  1AK7 A;  3EGX A;  3L50 A;  4CBX G;  2FH4 A;  1C0F S;  2FGH A;  3EG9 B;  1X67 A;  1F7S A;  1WM4 A;  3EH2 A;  1T3X A;  3EG9 A;  3A5N S;  3CJC G;  2I2Q A;  1KCQ A;  1PD0 A;  2MP4 A;  5KYU A;  1SVY A;  1VKK A;  2LJ8 A;  3A5O S;  1M2O A;  2L72 A;  3DAW B;  1YVN G;  2FH2 A;  1EQY S;  1RGI G;  3EGX B;  4PKH B;  1CFY A;  3FFK A;  1V6F A;  1J72 A;  1TVJ A;  1DEJ S;  2W0I A;  3CJB G;  1WFS A;  1M4J A;  2QTV A;  4CBU G;  5KYW A;  2VAC A;  5HVK D;  5A1M A;  5KYU B;  1TMW A;  2XFA A;  2NUP A;  1NPH A;  4BEX 1;  2NUT A;  2MOT A;  1D0N A;  1SVQ A;  3EFO A;  4KEE A;  1M2V A;  5FAF A;  5L6W C;  1AK6 A;  2VIK A;  1MDU A;  4LIZ A;  5DD2 A;  5IVU A;  5KYW B;  2HD7 A;  1QPV A;  1WNJ A;  3EGD B;  1P8Z G;  1NM1 G;  1T2L A;  1COF A;  2NUP B;  1D4X G;  1NMD G;  4KEF A;  2NUT B;  4PKG G;  2D8B A;  4PKI G;  3EGD A;  3EFO B;  1YAG G;  3Q2B A;  1M2V B;  1NLV G;  2FF3 A;  3FFN A;  4CBW G;  2VIL A;  2FH3 A;  1T44 G;  4Z94 G;  1Q8X A;  1H1V G;  3A5L S;  1Q8G A;  5FAE A;  1CNU A;  2MV2 A;  3FG7 A;  3CI5 G;  5HVK B;  5KYX A;  1AHQ A;  1PCX A;  3EH1 A;  1HQZ 1;  4S10 C;  2FF6 G;  2FH1 A;  3A5M S;  1P8X A;  3TU5 B;  2LXX A;  1UDM A;  1JHW A;  3FG6 A;  5KYN A;  2LLF A;  4JD2 H;  1ESV S;  1VFQ A;  1T3Y A;  5KYY B; 
#chains in the Genus database with same CATH topology
 5KYX B;  1C0G S;  1SVR A;  2XF1 A;  3CIP G;  2KVK A;  4KED A;  5KYY A;  1PD1 A;  3DA7 A;  1AK7 A;  3EGX A;  3L50 A;  4CBX G;  2FH4 A;  1C0F S;  2FGH A;  3EG9 B;  1X67 A;  1F7S A;  1WM4 A;  3EH2 A;  1T3X A;  3EG9 A;  3A5N S;  3CJC G;  2I2Q A;  1KCQ A;  1PD0 A;  2MP4 A;  5KYU A;  1SVY A;  1VKK A;  2LJ8 A;  3A5O S;  1M2O A;  2L72 A;  3DAW B;  1YVN G;  2FH2 A;  1EQY S;  1RGI G;  3EGX B;  4PKH B;  1CFY A;  3FFK A;  1V6F A;  1J72 A;  1TVJ A;  1DEJ S;  2W0I A;  3CJB G;  1WFS A;  1M4J A;  2QTV A;  4CBU G;  5KYW A;  2VAC A;  5HVK D;  5A1M A;  5KYU B;  1TMW A;  2XFA A;  2NUP A;  1NPH A;  4BEX 1;  2NUT A;  2MOT A;  1D0N A;  1SVQ A;  3EFO A;  4KEE A;  1M2V A;  5FAF A;  5L6W C;  1AK6 A;  2VIK A;  1MDU A;  4LIZ A;  5DD2 A;  5IVU A;  5KYW B;  2HD7 A;  1QPV A;  1WNJ A;  3EGD B;  1P8Z G;  1NM1 G;  1T2L A;  1COF A;  2NUP B;  1D4X G;  1NMD G;  4KEF A;  2NUT B;  4PKG G;  2D8B A;  4PKI G;  3EGD A;  3EFO B;  1YAG G;  3Q2B A;  1M2V B;  1NLV G;  2FF3 A;  3FFN A;  4CBW G;  2VIL A;  2FH3 A;  1T44 G;  4Z94 G;  1Q8X A;  1H1V G;  3A5L S;  1Q8G A;  5FAE A;  1CNU A;  2MV2 A;  3FG7 A;  3CI5 G;  5HVK B;  5KYX A;  1AHQ A;  1PCX A;  3EH1 A;  1HQZ 1;  4S10 C;  2FF6 G;  2FH1 A;  3A5M S;  1P8X A;  3TU5 B;  2LXX A;  1UDM A;  1JHW A;  3FG6 A;  5KYN A;  2LLF A;  4JD2 H;  1ESV S;  1VFQ A;  1T3Y A;  5KYY B; 
#chains in the Genus database with same CATH homology
 5KYX B;  1C0G S;  1SVR A;  2XF1 A;  3CIP G;  2KVK A;  4KED A;  5KYY A;  1PD1 A;  3DA7 A;  1AK7 A;  3EGX A;  3L50 A;  4CBX G;  2FH4 A;  1C0F S;  2FGH A;  3EG9 B;  1X67 A;  1F7S A;  1WM4 A;  3EH2 A;  1T3X A;  3EG9 A;  3A5N S;  3CJC G;  2I2Q A;  1KCQ A;  1PD0 A;  2MP4 A;  5KYU A;  1SVY A;  1VKK A;  2LJ8 A;  3A5O S;  1M2O A;  2L72 A;  3DAW B;  1YVN G;  2FH2 A;  1EQY S;  1RGI G;  3EGX B;  4PKH B;  1CFY A;  3FFK A;  1V6F A;  1J72 A;  1TVJ A;  1DEJ S;  2W0I A;  3CJB G;  1WFS A;  1M4J A;  2QTV A;  4CBU G;  5KYW A;  2VAC A;  5HVK D;  5A1M A;  5KYU B;  1TMW A;  2XFA A;  2NUP A;  1NPH A;  4BEX 1;  2NUT A;  2MOT A;  1D0N A;  1SVQ A;  3EFO A;  4KEE A;  1M2V A;  5FAF A;  5L6W C;  1AK6 A;  2VIK A;  1MDU A;  4LIZ A;  5DD2 A;  5IVU A;  5KYW B;  2HD7 A;  1QPV A;  1WNJ A;  3EGD B;  1P8Z G;  1NM1 G;  1T2L A;  1COF A;  2NUP B;  1D4X G;  1NMD G;  4KEF A;  2NUT B;  4PKG G;  2D8B A;  4PKI G;  3EGD A;  3EFO B;  1YAG G;  3Q2B A;  1M2V B;  1NLV G;  2FF3 A;  3FFN A;  4CBW G;  2VIL A;  2FH3 A;  1T44 G;  4Z94 G;  1Q8X A;  1H1V G;  3A5L S;  1Q8G A;  5FAE A;  1CNU A;  2MV2 A;  3FG7 A;  3CI5 G;  5HVK B;  5KYX A;  1AHQ A;  1PCX A;  3EH1 A;  1HQZ 1;  4S10 C;  2FF6 G;  2FH1 A;  3A5M S;  1P8X A;  3TU5 B;  2LXX A;  1UDM A;  1JHW A;  3FG6 A;  5KYN A;  2LLF A;  4JD2 H;  1ESV S;  1VFQ A;  1T3Y A;  5KYY B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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