1Q8GA

Nmr structure of human cofilin
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
166
structure length
166
Chain Sequence
MASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGSAVISLEGKPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Cofilin, non-muscle isoform
publication title The solution structure of human cofilin: rationalizing actin binding and pH sensitivity
pubmed doi rcsb
source organism Homo sapiens
total genus 26
structure length 166
sequence length 166
ec nomenclature
pdb deposition date 2003-08-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1q8gA00
4KEFA 1JHWA 2XFAA 3A5OS 1PCXA 2NUPA 1WM4A 3Q2BA 5KYUB 2HD7A 5FAFA 2MOTA 2W0IA 1TMWA 1T44G 2NUTB 4CBUG 1C0GS 4LIZA 1VKKA 2FH2A 4JD2H 1CNUA 1RGIG 1M4JA 3CI5G 1SVRA 4BEX1 2NUPB 1AK6A 2FH4A 2XF1A 1CFYA 2L72A 1UDMA 1AHQA 5IVUA 1NM1G 1NMDG 3TU5B 2VACA 1EQYS 2MV2A 3EGXA 2KVKA 4PKGG 1NLVG 4Z94G 1T3YA 4S10C 1COFA 1SVQA 3CJCG 3A5MS 1MDUA 4PKHB 3EH1A 5L6WC 3CIPG 2LLFA 1QPVA 3EGDA 5KYXB 3EGXB 2MP4A 2LJ8A 1HQZ1 1X67A 2FH1A 1TVJA 3FG7A 1AK7A 3EG9A 3EFOA 1T3XA 1M2OA 1H1VG 2LXXA 3FFKA 1SVYA 3FG6A 5KYYA 1Q8XA 1PD0A 2FF6G 2FF3A 5HVKB 3EGDB 2QTVA 1V6FA 1Q8GA 4KEDA 3L50A 2I2QA 2VILA 5KYYB 1J72A 1T2LA 5KYWA 2FGHA 1NPHA 3DAWB 1P8XA 5FAEA 1WFSA 5KYNA 2VIKA 1C0FS 1M2VA 3A5NS 1YAGG 1D4XG 5KYWB 3FFNA 5A1MA 4KEEA 3EG9B 2FH3A 2D8BA 1F7SA 1DEJS 3EFOB 5DD2A 1YVNG 5KYXA 3EH2A 5HVKD 4PKIG 1PD1A 1M2VB 1VFQA 4CBXG 5KYUA 1D0NA 1KCQA 2NUTA 4CBWG 1WNJA 3CJBG 3A5LS 1ESVS 1P8ZG
chains in the Genus database with same CATH superfamily
4KEFA 1JHWA 2XFAA 3A5OS 1PCXA 2NUPA 1WM4A 3Q2BA 5KYUB 2HD7A 5FAFA 2MOTA 2W0IA 1TMWA 1T44G 2NUTB 4CBUG 1C0GS 4LIZA 1VKKA 2FH2A 4JD2H 1CNUA 1RGIG 1M4JA 3CI5G 1SVRA 4BEX1 2NUPB 1AK6A 2FH4A 2XF1A 1CFYA 2L72A 3DA7A 1UDMA 1AHQA 5IVUA 1NM1G 1NMDG 3TU5B 2VACA 1EQYS 2MV2A 3EGXA 2KVKA 4PKGG 1NLVG 4Z94G 1T3YA 4S10C 1COFA 1SVQA 3CJCG 3A5MS 1MDUA 4PKHB 3EH1A 5L6WC 3CIPG 2LLFA 1QPVA 3EGDA 5KYXB 3EGXB 2MP4A 2LJ8A 1HQZ1 1X67A 2FH1A 1TVJA 3FG7A 1AK7A 3EG9A 3EFOA 1T3XA 1M2OA 1H1VG 2LXXA 3FFKA 1SVYA 3FG6A 5KYYA 1Q8XA 1PD0A 2FF6G 2FF3A 5HVKB 3EGDB 2QTVA 1V6FA 1Q8GA 4KEDA 3L50A 2I2QA 2VILA 5KYYB 1J72A 1T2LA 5KYWA 2FGHA 1NPHA 3DAWB 1P8XA 5FAEA 1WFSA 5KYNA 2VIKA 1C0FS 1M2VA 3A5NS 1YAGG 1D4XG 5KYWB 3FFNA 5A1MA 4KEEA 3EG9B 2FH3A 2D8BA 1F7SA 1DEJS 3EFOB 5DD2A 1YVNG 5KYXA 3EH2A 5HVKD 4PKIG 1PD1A 1M2VB 1VFQA 4CBXG 5KYUA 1D0NA 1KCQA 2NUTA 4CBWG 1WNJA 3CJBG 3A5LS 1ESVS 1P8ZG
chains in the Genus database with same CATH topology
4KEFA 1JHWA 2XFAA 3A5OS 1PCXA 2NUPA 1WM4A 3Q2BA 5KYUB 2HD7A 5FAFA 2MOTA 2W0IA 1TMWA 1T44G 2NUTB 4CBUG 1C0GS 4LIZA 1VKKA 2FH2A 4JD2H 1CNUA 1RGIG 1M4JA 3CI5G 1SVRA 4BEX1 2NUPB 1AK6A 2FH4A 2XF1A 1CFYA 2L72A 3DA7A 1UDMA 1AHQA 5IVUA 1NM1G 1NMDG 3TU5B 2VACA 1EQYS 2MV2A 3EGXA 2KVKA 4PKGG 1NLVG 4Z94G 1T3YA 4S10C 1COFA 1SVQA 3CJCG 3A5MS 1MDUA 4PKHB 3EH1A 5L6WC 3CIPG 2LLFA 1QPVA 3EGDA 5KYXB 3EGXB 2MP4A 2LJ8A 1HQZ1 1X67A 2FH1A 1TVJA 3FG7A 1AK7A 3EG9A 3EFOA 1T3XA 1M2OA 1H1VG 2LXXA 3FFKA 1SVYA 3FG6A 5KYYA 1Q8XA 1PD0A 2FF6G 2FF3A 5HVKB 3EGDB 2QTVA 1V6FA 1Q8GA 4KEDA 3L50A 2I2QA 2VILA 5KYYB 1J72A 1T2LA 5KYWA 2FGHA 1NPHA 3DAWB 1P8XA 5FAEA 1WFSA 5KYNA 2VIKA 1C0FS 1M2VA 3A5NS 1YAGG 1D4XG 5KYWB 3FFNA 5A1MA 4KEEA 3EG9B 2FH3A 2D8BA 1F7SA 1DEJS 3EFOB 5DD2A 1YVNG 5KYXA 3EH2A 5HVKD 4PKIG 1PD1A 1M2VB 1VFQA 4CBXG 5KYUA 1D0NA 1KCQA 2NUTA 4CBWG 1WNJA 3CJBG 3A5LS 1ESVS 1P8ZG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KEF A;  1JHW A;  2XFA A;  3A5O S;  1PCX A;  2NUP A;  1WM4 A;  3Q2B A;  5KYU B;  2HD7 A;  5FAF A;  2MOT A;  2W0I A;  1TMW A;  1T44 G;  2NUT B;  4CBU G;  1C0G S;  4LIZ A;  1VKK A;  2FH2 A;  4JD2 H;  1CNU A;  1RGI G;  1M4J A;  3CI5 G;  1SVR A;  4BEX 1;  2NUP B;  1AK6 A;  2FH4 A;  2XF1 A;  1CFY A;  2L72 A;  1UDM A;  1AHQ A;  5IVU A;  1NM1 G;  1NMD G;  3TU5 B;  2VAC A;  1EQY S;  2MV2 A;  3EGX A;  2KVK A;  4PKG G;  1NLV G;  4Z94 G;  1T3Y A;  4S10 C;  1COF A;  1SVQ A;  3CJC G;  3A5M S;  1MDU A;  4PKH B;  3EH1 A;  5L6W C;  3CIP G;  2LLF A;  1QPV A;  3EGD A;  5KYX B;  3EGX B;  2MP4 A;  2LJ8 A;  1HQZ 1;  1X67 A;  2FH1 A;  1TVJ A;  3FG7 A;  1AK7 A;  3EG9 A;  3EFO A;  1T3X A;  1M2O A;  1H1V G;  2LXX A;  3FFK A;  1SVY A;  3FG6 A;  5KYY A;  1Q8X A;  1PD0 A;  2FF6 G;  2FF3 A;  5HVK B;  3EGD B;  2QTV A;  1V6F A;  1Q8G A;  4KED A;  3L50 A;  2I2Q A;  2VIL A;  5KYY B;  1J72 A;  1T2L A;  5KYW A;  2FGH A;  1NPH A;  3DAW B;  1P8X A;  5FAE A;  1WFS A;  5KYN A;  2VIK A;  1C0F S;  1M2V A;  3A5N S;  1YAG G;  1D4X G;  5KYW B;  3FFN A;  5A1M A;  4KEE A;  3EG9 B;  2FH3 A;  2D8B A;  1F7S A;  1DEJ S;  3EFO B;  5DD2 A;  1YVN G;  5KYX A;  3EH2 A;  5HVK D;  4PKI G;  1PD1 A;  1M2V B;  1VFQ A;  4CBX G;  5KYU A;  1D0N A;  1KCQ A;  2NUT A;  4CBW G;  1WNJ A;  3CJB G;  3A5L S;  1ESV S;  1P8Z G; 
#chains in the Genus database with same CATH topology
 4KEF A;  1JHW A;  2XFA A;  3A5O S;  1PCX A;  2NUP A;  1WM4 A;  3Q2B A;  5KYU B;  2HD7 A;  5FAF A;  2MOT A;  2W0I A;  1TMW A;  1T44 G;  2NUT B;  4CBU G;  1C0G S;  4LIZ A;  1VKK A;  2FH2 A;  4JD2 H;  1CNU A;  1RGI G;  1M4J A;  3CI5 G;  1SVR A;  4BEX 1;  2NUP B;  1AK6 A;  2FH4 A;  2XF1 A;  1CFY A;  2L72 A;  3DA7 A;  1UDM A;  1AHQ A;  5IVU A;  1NM1 G;  1NMD G;  3TU5 B;  2VAC A;  1EQY S;  2MV2 A;  3EGX A;  2KVK A;  4PKG G;  1NLV G;  4Z94 G;  1T3Y A;  4S10 C;  1COF A;  1SVQ A;  3CJC G;  3A5M S;  1MDU A;  4PKH B;  3EH1 A;  5L6W C;  3CIP G;  2LLF A;  1QPV A;  3EGD A;  5KYX B;  3EGX B;  2MP4 A;  2LJ8 A;  1HQZ 1;  1X67 A;  2FH1 A;  1TVJ A;  3FG7 A;  1AK7 A;  3EG9 A;  3EFO A;  1T3X A;  1M2O A;  1H1V G;  2LXX A;  3FFK A;  1SVY A;  3FG6 A;  5KYY A;  1Q8X A;  1PD0 A;  2FF6 G;  2FF3 A;  5HVK B;  3EGD B;  2QTV A;  1V6F A;  1Q8G A;  4KED A;  3L50 A;  2I2Q A;  2VIL A;  5KYY B;  1J72 A;  1T2L A;  5KYW A;  2FGH A;  1NPH A;  3DAW B;  1P8X A;  5FAE A;  1WFS A;  5KYN A;  2VIK A;  1C0F S;  1M2V A;  3A5N S;  1YAG G;  1D4X G;  5KYW B;  3FFN A;  5A1M A;  4KEE A;  3EG9 B;  2FH3 A;  2D8B A;  1F7S A;  1DEJ S;  3EFO B;  5DD2 A;  1YVN G;  5KYX A;  3EH2 A;  5HVK D;  4PKI G;  1PD1 A;  1M2V B;  1VFQ A;  4CBX G;  5KYU A;  1D0N A;  1KCQ A;  2NUT A;  4CBW G;  1WNJ A;  3CJB G;  3A5L S;  1ESV S;  1P8Z G; 
#chains in the Genus database with same CATH homology
 4KEF A;  1JHW A;  2XFA A;  3A5O S;  1PCX A;  2NUP A;  1WM4 A;  3Q2B A;  5KYU B;  2HD7 A;  5FAF A;  2MOT A;  2W0I A;  1TMW A;  1T44 G;  2NUT B;  4CBU G;  1C0G S;  4LIZ A;  1VKK A;  2FH2 A;  4JD2 H;  1CNU A;  1RGI G;  1M4J A;  3CI5 G;  1SVR A;  4BEX 1;  2NUP B;  1AK6 A;  2FH4 A;  2XF1 A;  1CFY A;  2L72 A;  3DA7 A;  1UDM A;  1AHQ A;  5IVU A;  1NM1 G;  1NMD G;  3TU5 B;  2VAC A;  1EQY S;  2MV2 A;  3EGX A;  2KVK A;  4PKG G;  1NLV G;  4Z94 G;  1T3Y A;  4S10 C;  1COF A;  1SVQ A;  3CJC G;  3A5M S;  1MDU A;  4PKH B;  3EH1 A;  5L6W C;  3CIP G;  2LLF A;  1QPV A;  3EGD A;  5KYX B;  3EGX B;  2MP4 A;  2LJ8 A;  1HQZ 1;  1X67 A;  2FH1 A;  1TVJ A;  3FG7 A;  1AK7 A;  3EG9 A;  3EFO A;  1T3X A;  1M2O A;  1H1V G;  2LXX A;  3FFK A;  1SVY A;  3FG6 A;  5KYY A;  1Q8X A;  1PD0 A;  2FF6 G;  2FF3 A;  5HVK B;  3EGD B;  2QTV A;  1V6F A;  1Q8G A;  4KED A;  3L50 A;  2I2Q A;  2VIL A;  5KYY B;  1J72 A;  1T2L A;  5KYW A;  2FGH A;  1NPH A;  3DAW B;  1P8X A;  5FAE A;  1WFS A;  5KYN A;  2VIK A;  1C0F S;  1M2V A;  3A5N S;  1YAG G;  1D4X G;  5KYW B;  3FFN A;  5A1M A;  4KEE A;  3EG9 B;  2FH3 A;  2D8B A;  1F7S A;  1DEJ S;  3EFO B;  5DD2 A;  1YVN G;  5KYX A;  3EH2 A;  5HVK D;  4PKI G;  1PD1 A;  1M2V B;  1VFQ A;  4CBX G;  5KYU A;  1D0N A;  1KCQ A;  2NUT A;  4CBW G;  1WNJ A;  3CJB G;  3A5L S;  1ESV S;  1P8Z G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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