1F7S | Genus

Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	36
sequence length	124
structure length	124
Chain Sequence	ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	A comparative structural analysis of the ADF/cofilin family. pubmed doi rcsb
molecule keywords	ACTIN DEPOLYMERIZING FACTOR (ADF)
molecule tags	Plant protein
source organism	Arabidopsis thaliana
total genus	36
structure length	124
sequence length	124
ec nomenclature
pdb deposition date	2000-06-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00241	Cofilin_ADF	Cofilin/tropomyosin-type actin-binding protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.20.10	Alpha Beta	3-Layer(aba) Sandwich	Severin	Severin	1f7sA00

1COFA 3EGDB 1AHQA 1TVJA 5KYXA 3DAWB 5IVUA 3FFNA 1SVYA 2MOTA 3EH1A 4PKIG 2FF6G 1CFYA 1M2OA 2NUPB 1QPVA 2NUTB 3A5OS 2XF1A 4S10C 1M4JA 5KYXB 3EFOA 4KEDA 1SVRA 1WFSA 1H1VG 2LLFA 5KYUB 4KEEA 2LXXA 4Z94G 4CBXG 1EQYS 1KCQA 1M2VA 1C0FS 2KVKA 1PD1A 3EH2A 4PKHB 4CBUG 2D8BA 1YAGG 1VFQA 2VIKA 1V6FA 1J72A 1WNJA 5L6WC 1D4XG 4LIZA 2LJ8A 1C0GS 1PD0A 3A5LS 1AK6A 5KYYB 3CJBG 1X67A 3EG9A 1HQZ1 3CIPG 5FAFA 5FAEA 1Q8XA 2W0IA 2FH3A 1PCXA 1NLVG 1NMDG 3EFOB 3FFKA 1JHWA 2FH1A 2FGHA 3EGDA 4KEFA 3Q2BA 5KYNA 2MP4A 1P8XA 1M2VB 1UDMA 1T2LA 4PKGG 1T3YA 2L72A 3CI5G 3EGXA 2VACA 2NUPA 3FG6A 2NUTA 5KYWA 3TU5B 2FF3A 1DEJS 2FH2A 2QTVA 1T3XA 2I2QA 5HVKD 2FH4A 2MV2A 1NM1G 5A1MA 1TMWA 1T44G 1F7SA 5KYUA 1AK7A 1MDUA 3EGXB 1WM4A 4CBWG 1D0NA 5KYWB 3EG9B 2XFAA 3FG7A 2VILA 2HD7A 3L50A 3CJCG 1SVQA 5DD2A 1YVNG 5HVKB 3A5MS 1P8ZG 4JD2H 1RGIG 1ESVS 1CNUA 3A5NS 1Q8GA 1NPHA 1VKKA 4BEX1 5KYYA
chains in the Genus database with same CATH superfamily

1COFA 3EGDB 1AHQA 1TVJA 5KYXA 3DAWB 5IVUA 3FFNA 1SVYA 2MOTA 3EH1A 4PKIG 2FF6G 1CFYA 1M2OA 2NUPB 1QPVA 2NUTB 3A5OS 2XF1A 4S10C 1M4JA 5KYXB 3EFOA 4KEDA 1SVRA 1WFSA 1H1VG 2LLFA 5KYUB 4KEEA 2LXXA 4Z94G 4CBXG 1EQYS 1KCQA 1M2VA 1C0FS 2KVKA 1PD1A 3EH2A 4PKHB 4CBUG 2D8BA 1YAGG 1VFQA 2VIKA 1V6FA 1J72A 1WNJA 5L6WC 1D4XG 4LIZA 2LJ8A 1C0GS 1PD0A 3A5LS 1AK6A 5KYYB 3CJBG 1X67A 3EG9A 1HQZ1 3CIPG 5FAFA 5FAEA 1Q8XA 2W0IA 3DA7A 2FH3A 1PCXA 1NLVG 1NMDG 3EFOB 3FFKA 1JHWA 2FH1A 2FGHA 3EGDA 4KEFA 3Q2BA 5KYNA 2MP4A 1P8XA 1M2VB 1UDMA 1T2LA 4PKGG 1T3YA 2L72A 3CI5G 3EGXA 2VACA 2NUPA 3FG6A 2NUTA 5KYWA 3TU5B 2FF3A 1DEJS 2FH2A 2QTVA 1T3XA 2I2QA 5HVKD 2FH4A 2MV2A 1NM1G 5A1MA 1TMWA 1T44G 1F7SA 5KYUA 1AK7A 1MDUA 3EGXB 1WM4A 4CBWG 1D0NA 5KYWB 3EG9B 2XFAA 3FG7A 2VILA 2HD7A 3L50A 3CJCG 1SVQA 5DD2A 1YVNG 5HVKB 3A5MS 1P8ZG 4JD2H 1RGIG 1ESVS 1CNUA 3A5NS 1Q8GA 1NPHA 1VKKA 4BEX1 5KYYA
chains in the Genus database with same CATH topology

1COFA 3EGDB 1AHQA 1TVJA 5KYXA 3DAWB 5IVUA 3FFNA 1SVYA 2MOTA 3EH1A 4PKIG 2FF6G 1CFYA 1M2OA 2NUPB 1QPVA 2NUTB 3A5OS 2XF1A 4S10C 1M4JA 5KYXB 3EFOA 4KEDA 1SVRA 1WFSA 1H1VG 2LLFA 5KYUB 4KEEA 2LXXA 4Z94G 4CBXG 1EQYS 1KCQA 1M2VA 1C0FS 2KVKA 1PD1A 3EH2A 4PKHB 4CBUG 2D8BA 1YAGG 1VFQA 2VIKA 1V6FA 1J72A 1WNJA 5L6WC 1D4XG 4LIZA 2LJ8A 1C0GS 1PD0A 3A5LS 1AK6A 5KYYB 3CJBG 1X67A 3EG9A 1HQZ1 3CIPG 5FAFA 5FAEA 1Q8XA 2W0IA 3DA7A 2FH3A 1PCXA 1NLVG 1NMDG 3EFOB 3FFKA 1JHWA 2FH1A 2FGHA 3EGDA 4KEFA 3Q2BA 5KYNA 2MP4A 1P8XA 1M2VB 1UDMA 1T2LA 4PKGG 1T3YA 2L72A 3CI5G 3EGXA 2VACA 2NUPA 3FG6A 2NUTA 5KYWA 3TU5B 2FF3A 1DEJS 2FH2A 2QTVA 1T3XA 2I2QA 5HVKD 2FH4A 2MV2A 1NM1G 5A1MA 1TMWA 1T44G 1F7SA 5KYUA 1AK7A 1MDUA 3EGXB 1WM4A 4CBWG 1D0NA 5KYWB 3EG9B 2XFAA 3FG7A 2VILA 2HD7A 3L50A 3CJCG 1SVQA 5DD2A 1YVNG 5HVKB 3A5MS 1P8ZG 4JD2H 1RGIG 1ESVS 1CNUA 3A5NS 1Q8GA 1NPHA 1VKKA 4BEX1 5KYYA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1COF A;  3EGD B;  1AHQ A;  1TVJ A;  5KYX A;  3DAW B;  5IVU A;  3FFN A;  1SVY A;  2MOT A;  3EH1 A;  4PKI G;  2FF6 G;  1CFY A;  1M2O A;  2NUP B;  1QPV A;  2NUT B;  3A5O S;  2XF1 A;  4S10 C;  1M4J A;  5KYX B;  3EFO A;  4KED A;  1SVR A;  1WFS A;  1H1V G;  2LLF A;  5KYU B;  4KEE A;  2LXX A;  4Z94 G;  4CBX G;  1EQY S;  1KCQ A;  1M2V A;  1C0F S;  2KVK A;  1PD1 A;  3EH2 A;  4PKH B;  4CBU G;  2D8B A;  1YAG G;  1VFQ A;  2VIK A;  1V6F A;  1J72 A;  1WNJ A;  5L6W C;  1D4X G;  4LIZ A;  2LJ8 A;  1C0G S;  1PD0 A;  3A5L S;  1AK6 A;  5KYY B;  3CJB G;  1X67 A;  3EG9 A;  1HQZ 1;  3CIP G;  5FAF A;  5FAE A;  1Q8X A;  2W0I A;  2FH3 A;  1PCX A;  1NLV G;  1NMD G;  3EFO B;  3FFK A;  1JHW A;  2FH1 A;  2FGH A;  3EGD A;  4KEF A;  3Q2B A;  5KYN A;  2MP4 A;  1P8X A;  1M2V B;  1UDM A;  1T2L A;  4PKG G;  1T3Y A;  2L72 A;  3CI5 G;  3EGX A;  2VAC A;  2NUP A;  3FG6 A;  2NUT A;  5KYW A;  3TU5 B;  2FF3 A;  1DEJ S;  2FH2 A;  2QTV A;  1T3X A;  2I2Q A;  5HVK D;  2FH4 A;  2MV2 A;  1NM1 G;  5A1M A;  1TMW A;  1T44 G;  1F7S A;  5KYU A;  1AK7 A;  1MDU A;  3EGX B;  1WM4 A;  4CBW G;  1D0N A;  5KYW B;  3EG9 B;  2XFA A;  3FG7 A;  2VIL A;  2HD7 A;  3L50 A;  3CJC G;  1SVQ A;  5DD2 A;  1YVN G;  5HVK B;  3A5M S;  1P8Z G;  4JD2 H;  1RGI G;  1ESV S;  1CNU A;  3A5N S;  1Q8G A;  1NPH A;  1VKK A;  4BEX 1;  5KYY A; 
#chains in the Genus database with same CATH topology
 1COF A;  3EGD B;  1AHQ A;  1TVJ A;  5KYX A;  3DAW B;  5IVU A;  3FFN A;  1SVY A;  2MOT A;  3EH1 A;  4PKI G;  2FF6 G;  1CFY A;  1M2O A;  2NUP B;  1QPV A;  2NUT B;  3A5O S;  2XF1 A;  4S10 C;  1M4J A;  5KYX B;  3EFO A;  4KED A;  1SVR A;  1WFS A;  1H1V G;  2LLF A;  5KYU B;  4KEE A;  2LXX A;  4Z94 G;  4CBX G;  1EQY S;  1KCQ A;  1M2V A;  1C0F S;  2KVK A;  1PD1 A;  3EH2 A;  4PKH B;  4CBU G;  2D8B A;  1YAG G;  1VFQ A;  2VIK A;  1V6F A;  1J72 A;  1WNJ A;  5L6W C;  1D4X G;  4LIZ A;  2LJ8 A;  1C0G S;  1PD0 A;  3A5L S;  1AK6 A;  5KYY B;  3CJB G;  1X67 A;  3EG9 A;  1HQZ 1;  3CIP G;  5FAF A;  5FAE A;  1Q8X A;  2W0I A;  3DA7 A;  2FH3 A;  1PCX A;  1NLV G;  1NMD G;  3EFO B;  3FFK A;  1JHW A;  2FH1 A;  2FGH A;  3EGD A;  4KEF A;  3Q2B A;  5KYN A;  2MP4 A;  1P8X A;  1M2V B;  1UDM A;  1T2L A;  4PKG G;  1T3Y A;  2L72 A;  3CI5 G;  3EGX A;  2VAC A;  2NUP A;  3FG6 A;  2NUT A;  5KYW A;  3TU5 B;  2FF3 A;  1DEJ S;  2FH2 A;  2QTV A;  1T3X A;  2I2Q A;  5HVK D;  2FH4 A;  2MV2 A;  1NM1 G;  5A1M A;  1TMW A;  1T44 G;  1F7S A;  5KYU A;  1AK7 A;  1MDU A;  3EGX B;  1WM4 A;  4CBW G;  1D0N A;  5KYW B;  3EG9 B;  2XFA A;  3FG7 A;  2VIL A;  2HD7 A;  3L50 A;  3CJC G;  1SVQ A;  5DD2 A;  1YVN G;  5HVK B;  3A5M S;  1P8Z G;  4JD2 H;  1RGI G;  1ESV S;  1CNU A;  3A5N S;  1Q8G A;  1NPH A;  1VKK A;  4BEX 1;  5KYY A; 
#chains in the Genus database with same CATH homology
 1COF A;  3EGD B;  1AHQ A;  1TVJ A;  5KYX A;  3DAW B;  5IVU A;  3FFN A;  1SVY A;  2MOT A;  3EH1 A;  4PKI G;  2FF6 G;  1CFY A;  1M2O A;  2NUP B;  1QPV A;  2NUT B;  3A5O S;  2XF1 A;  4S10 C;  1M4J A;  5KYX B;  3EFO A;  4KED A;  1SVR A;  1WFS A;  1H1V G;  2LLF A;  5KYU B;  4KEE A;  2LXX A;  4Z94 G;  4CBX G;  1EQY S;  1KCQ A;  1M2V A;  1C0F S;  2KVK A;  1PD1 A;  3EH2 A;  4PKH B;  4CBU G;  2D8B A;  1YAG G;  1VFQ A;  2VIK A;  1V6F A;  1J72 A;  1WNJ A;  5L6W C;  1D4X G;  4LIZ A;  2LJ8 A;  1C0G S;  1PD0 A;  3A5L S;  1AK6 A;  5KYY B;  3CJB G;  1X67 A;  3EG9 A;  1HQZ 1;  3CIP G;  5FAF A;  5FAE A;  1Q8X A;  2W0I A;  3DA7 A;  2FH3 A;  1PCX A;  1NLV G;  1NMD G;  3EFO B;  3FFK A;  1JHW A;  2FH1 A;  2FGH A;  3EGD A;  4KEF A;  3Q2B A;  5KYN A;  2MP4 A;  1P8X A;  1M2V B;  1UDM A;  1T2L A;  4PKG G;  1T3Y A;  2L72 A;  3CI5 G;  3EGX A;  2VAC A;  2NUP A;  3FG6 A;  2NUT A;  5KYW A;  3TU5 B;  2FF3 A;  1DEJ S;  2FH2 A;  2QTV A;  1T3X A;  2I2Q A;  5HVK D;  2FH4 A;  2MV2 A;  1NM1 G;  5A1M A;  1TMW A;  1T44 G;  1F7S A;  5KYU A;  1AK7 A;  1MDU A;  3EGX B;  1WM4 A;  4CBW G;  1D0N A;  5KYW B;  3EG9 B;  2XFA A;  3FG7 A;  2VIL A;  2HD7 A;  3L50 A;  3CJC G;  1SVQ A;  5DD2 A;  1YVN G;  5HVK B;  3A5M S;  1P8Z G;  4JD2 H;  1RGI G;  1ESV S;  1CNU A;  3A5N S;  1Q8G A;  1NPH A;  1VKK A;  4BEX 1;  5KYY A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1F7SA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations