1F7SA

Crystal structure of adf1 from arabidopsis thaliana
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
124
structure length
124
Chain Sequence
ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A comparative structural analysis of the ADF/cofilin family.
pubmed doi rcsb
molecule tags Plant protein
source organism Arabidopsis thaliana
molecule keywords ACTIN DEPOLYMERIZING FACTOR (ADF)
total genus 36
structure length 124
sequence length 124
ec nomenclature
pdb deposition date 2000-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1f7sA00
1NLVG 1C0FS 1CNUA 3A5NS 3EGXA 1T3YA 2LXXA 3EFOA 1D4XG 1T3XA 5IVUA 4Z94G 2MP4A 5KYWA 4PKGG 3FFNA 5KYXB 2FH2A 1COFA 2NUTA 5KYYB 2FH3A 3FG7A 2L72A 1H1VG 5KYUA 4BEX1 3EGDB 1EQYS 3A5LS 1T2LA 1MDUA 1M2VB 3FFKA 1VKKA 1Q8GA 5HVKB 3EH2A 2FH1A 2MOTA 2XF1A 1ESVS 4S10C 1RGIG 1NPHA 1Q8XA 2FF6G 1QPVA 2FF3A 3EGXB 1CFYA 3CIPG 1PCXA 2FH4A 3A5MS 3EFOB 2VACA 5KYNA 2NUPB 3EG9A 1JHWA 5KYWB 1SVRA 3CI5G 5DD2A 2NUTB 1D0NA 1PD0A 3L50A 4KEEA 2MV2A 2D8BA 3DAWB 1M2OA 5KYUB 5FAFA 3A5OS 2FGHA 1YAGG 2W0IA 4JD2H 2XFAA 4CBUG 1WFSA 4CBWG 5L6WC 2VILA 2I2QA 1VFQA 1YVNG 1SVQA 2LJ8A 4KEDA 1AK6A 3CJBG 1NMDG 1M4JA 1F7SA 4KEFA 5FAEA 1J72A 2LLFA 1TMWA 2VIKA 1UDMA 1PD1A 3CJCG 2QTVA 1HQZ1 4CBXG 1DEJS 1WM4A 1NM1G 3TU5B 5KYXA 5KYYA 1C0GS 1X67A 2NUPA 1SVYA 3Q2BA 3EG9B 3EGDA 1P8ZG 1AK7A 1T44G 5HVKD 4PKHB 1M2VA 4LIZA 4PKIG 1WNJA 1P8XA 3FG6A 3EH1A 1V6FA 2HD7A 1KCQA 5A1MA 2KVKA 1AHQA 1TVJA
chains in the Genus database with same CATH superfamily
3DA7A 1NLVG 1C0FS 1CNUA 3A5NS 3EGXA 1T3YA 2LXXA 3EFOA 1D4XG 1T3XA 5IVUA 4Z94G 2MP4A 5KYWA 4PKGG 3FFNA 5KYXB 2FH2A 1COFA 2NUTA 5KYYB 2FH3A 3FG7A 2L72A 1H1VG 5KYUA 4BEX1 3EGDB 1EQYS 3A5LS 1T2LA 1MDUA 1M2VB 3FFKA 1VKKA 1Q8GA 5HVKB 3EH2A 2FH1A 2MOTA 2XF1A 1ESVS 4S10C 1RGIG 1NPHA 1Q8XA 2FF6G 1QPVA 2FF3A 3EGXB 1CFYA 3CIPG 1PCXA 2FH4A 3A5MS 3EFOB 2VACA 5KYNA 2NUPB 3EG9A 1JHWA 5KYWB 1SVRA 3CI5G 5DD2A 2NUTB 1D0NA 1PD0A 3L50A 4KEEA 2MV2A 2D8BA 3DAWB 1M2OA 5KYUB 5FAFA 3A5OS 2FGHA 1YAGG 2W0IA 4JD2H 2XFAA 4CBUG 1WFSA 4CBWG 5L6WC 2VILA 2I2QA 1VFQA 1YVNG 1SVQA 2LJ8A 4KEDA 1AK6A 3CJBG 1NMDG 1M4JA 1F7SA 4KEFA 5FAEA 1J72A 2LLFA 1TMWA 2VIKA 1UDMA 1PD1A 3CJCG 2QTVA 1HQZ1 4CBXG 1DEJS 1WM4A 1NM1G 3TU5B 5KYXA 5KYYA 1C0GS 1X67A 2NUPA 1SVYA 3Q2BA 3EG9B 3EGDA 1P8ZG 1AK7A 1T44G 5HVKD 4PKHB 1M2VA 4LIZA 4PKIG 1WNJA 1P8XA 3FG6A 3EH1A 1V6FA 2HD7A 1KCQA 5A1MA 2KVKA 1AHQA 1TVJA
chains in the Genus database with same CATH topology
3DA7A 1NLVG 1C0FS 1CNUA 3A5NS 3EGXA 1T3YA 2LXXA 3EFOA 1D4XG 1T3XA 5IVUA 4Z94G 2MP4A 5KYWA 4PKGG 3FFNA 5KYXB 2FH2A 1COFA 2NUTA 5KYYB 2FH3A 3FG7A 2L72A 1H1VG 5KYUA 4BEX1 3EGDB 1EQYS 3A5LS 1T2LA 1MDUA 1M2VB 3FFKA 1VKKA 1Q8GA 5HVKB 3EH2A 2FH1A 2MOTA 2XF1A 1ESVS 4S10C 1RGIG 1NPHA 1Q8XA 2FF6G 1QPVA 2FF3A 3EGXB 1CFYA 3CIPG 1PCXA 2FH4A 3A5MS 3EFOB 2VACA 5KYNA 2NUPB 3EG9A 1JHWA 5KYWB 1SVRA 3CI5G 5DD2A 2NUTB 1D0NA 1PD0A 3L50A 4KEEA 2MV2A 2D8BA 3DAWB 1M2OA 5KYUB 5FAFA 3A5OS 2FGHA 1YAGG 2W0IA 4JD2H 2XFAA 4CBUG 1WFSA 4CBWG 5L6WC 2VILA 2I2QA 1VFQA 1YVNG 1SVQA 2LJ8A 4KEDA 1AK6A 3CJBG 1NMDG 1M4JA 1F7SA 4KEFA 5FAEA 1J72A 2LLFA 1TMWA 2VIKA 1UDMA 1PD1A 3CJCG 2QTVA 1HQZ1 4CBXG 1DEJS 1WM4A 1NM1G 3TU5B 5KYXA 5KYYA 1C0GS 1X67A 2NUPA 1SVYA 3Q2BA 3EG9B 3EGDA 1P8ZG 1AK7A 1T44G 5HVKD 4PKHB 1M2VA 4LIZA 4PKIG 1WNJA 1P8XA 3FG6A 3EH1A 1V6FA 2HD7A 1KCQA 5A1MA 2KVKA 1AHQA 1TVJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NLV G;  1C0F S;  1CNU A;  3A5N S;  3EGX A;  1T3Y A;  2LXX A;  3EFO A;  1D4X G;  1T3X A;  5IVU A;  4Z94 G;  2MP4 A;  5KYW A;  4PKG G;  3FFN A;  5KYX B;  2FH2 A;  1COF A;  2NUT A;  5KYY B;  2FH3 A;  3FG7 A;  2L72 A;  1H1V G;  5KYU A;  4BEX 1;  3EGD B;  1EQY S;  3A5L S;  1T2L A;  1MDU A;  1M2V B;  3FFK A;  1VKK A;  1Q8G A;  5HVK B;  3EH2 A;  2FH1 A;  2MOT A;  2XF1 A;  1ESV S;  4S10 C;  1RGI G;  1NPH A;  1Q8X A;  2FF6 G;  1QPV A;  2FF3 A;  3EGX B;  1CFY A;  3CIP G;  1PCX A;  2FH4 A;  3A5M S;  3EFO B;  2VAC A;  5KYN A;  2NUP B;  3EG9 A;  1JHW A;  5KYW B;  1SVR A;  3CI5 G;  5DD2 A;  2NUT B;  1D0N A;  1PD0 A;  3L50 A;  4KEE A;  2MV2 A;  2D8B A;  3DAW B;  1M2O A;  5KYU B;  5FAF A;  3A5O S;  2FGH A;  1YAG G;  2W0I A;  4JD2 H;  2XFA A;  4CBU G;  1WFS A;  4CBW G;  5L6W C;  2VIL A;  2I2Q A;  1VFQ A;  1YVN G;  1SVQ A;  2LJ8 A;  4KED A;  1AK6 A;  3CJB G;  1NMD G;  1M4J A;  1F7S A;  4KEF A;  5FAE A;  1J72 A;  2LLF A;  1TMW A;  2VIK A;  1UDM A;  1PD1 A;  3CJC G;  2QTV A;  1HQZ 1;  4CBX G;  1DEJ S;  1WM4 A;  1NM1 G;  3TU5 B;  5KYX A;  5KYY A;  1C0G S;  1X67 A;  2NUP A;  1SVY A;  3Q2B A;  3EG9 B;  3EGD A;  1P8Z G;  1AK7 A;  1T44 G;  5HVK D;  4PKH B;  1M2V A;  4LIZ A;  4PKI G;  1WNJ A;  1P8X A;  3FG6 A;  3EH1 A;  1V6F A;  2HD7 A;  1KCQ A;  5A1M A;  2KVK A;  1AHQ A;  1TVJ A; 
#chains in the Genus database with same CATH topology
 3DA7 A;  1NLV G;  1C0F S;  1CNU A;  3A5N S;  3EGX A;  1T3Y A;  2LXX A;  3EFO A;  1D4X G;  1T3X A;  5IVU A;  4Z94 G;  2MP4 A;  5KYW A;  4PKG G;  3FFN A;  5KYX B;  2FH2 A;  1COF A;  2NUT A;  5KYY B;  2FH3 A;  3FG7 A;  2L72 A;  1H1V G;  5KYU A;  4BEX 1;  3EGD B;  1EQY S;  3A5L S;  1T2L A;  1MDU A;  1M2V B;  3FFK A;  1VKK A;  1Q8G A;  5HVK B;  3EH2 A;  2FH1 A;  2MOT A;  2XF1 A;  1ESV S;  4S10 C;  1RGI G;  1NPH A;  1Q8X A;  2FF6 G;  1QPV A;  2FF3 A;  3EGX B;  1CFY A;  3CIP G;  1PCX A;  2FH4 A;  3A5M S;  3EFO B;  2VAC A;  5KYN A;  2NUP B;  3EG9 A;  1JHW A;  5KYW B;  1SVR A;  3CI5 G;  5DD2 A;  2NUT B;  1D0N A;  1PD0 A;  3L50 A;  4KEE A;  2MV2 A;  2D8B A;  3DAW B;  1M2O A;  5KYU B;  5FAF A;  3A5O S;  2FGH A;  1YAG G;  2W0I A;  4JD2 H;  2XFA A;  4CBU G;  1WFS A;  4CBW G;  5L6W C;  2VIL A;  2I2Q A;  1VFQ A;  1YVN G;  1SVQ A;  2LJ8 A;  4KED A;  1AK6 A;  3CJB G;  1NMD G;  1M4J A;  1F7S A;  4KEF A;  5FAE A;  1J72 A;  2LLF A;  1TMW A;  2VIK A;  1UDM A;  1PD1 A;  3CJC G;  2QTV A;  1HQZ 1;  4CBX G;  1DEJ S;  1WM4 A;  1NM1 G;  3TU5 B;  5KYX A;  5KYY A;  1C0G S;  1X67 A;  2NUP A;  1SVY A;  3Q2B A;  3EG9 B;  3EGD A;  1P8Z G;  1AK7 A;  1T44 G;  5HVK D;  4PKH B;  1M2V A;  4LIZ A;  4PKI G;  1WNJ A;  1P8X A;  3FG6 A;  3EH1 A;  1V6F A;  2HD7 A;  1KCQ A;  5A1M A;  2KVK A;  1AHQ A;  1TVJ A; 
#chains in the Genus database with same CATH homology
 3DA7 A;  1NLV G;  1C0F S;  1CNU A;  3A5N S;  3EGX A;  1T3Y A;  2LXX A;  3EFO A;  1D4X G;  1T3X A;  5IVU A;  4Z94 G;  2MP4 A;  5KYW A;  4PKG G;  3FFN A;  5KYX B;  2FH2 A;  1COF A;  2NUT A;  5KYY B;  2FH3 A;  3FG7 A;  2L72 A;  1H1V G;  5KYU A;  4BEX 1;  3EGD B;  1EQY S;  3A5L S;  1T2L A;  1MDU A;  1M2V B;  3FFK A;  1VKK A;  1Q8G A;  5HVK B;  3EH2 A;  2FH1 A;  2MOT A;  2XF1 A;  1ESV S;  4S10 C;  1RGI G;  1NPH A;  1Q8X A;  2FF6 G;  1QPV A;  2FF3 A;  3EGX B;  1CFY A;  3CIP G;  1PCX A;  2FH4 A;  3A5M S;  3EFO B;  2VAC A;  5KYN A;  2NUP B;  3EG9 A;  1JHW A;  5KYW B;  1SVR A;  3CI5 G;  5DD2 A;  2NUT B;  1D0N A;  1PD0 A;  3L50 A;  4KEE A;  2MV2 A;  2D8B A;  3DAW B;  1M2O A;  5KYU B;  5FAF A;  3A5O S;  2FGH A;  1YAG G;  2W0I A;  4JD2 H;  2XFA A;  4CBU G;  1WFS A;  4CBW G;  5L6W C;  2VIL A;  2I2Q A;  1VFQ A;  1YVN G;  1SVQ A;  2LJ8 A;  4KED A;  1AK6 A;  3CJB G;  1NMD G;  1M4J A;  1F7S A;  4KEF A;  5FAE A;  1J72 A;  2LLF A;  1TMW A;  2VIK A;  1UDM A;  1PD1 A;  3CJC G;  2QTV A;  1HQZ 1;  4CBX G;  1DEJ S;  1WM4 A;  1NM1 G;  3TU5 B;  5KYX A;  5KYY A;  1C0G S;  1X67 A;  2NUP A;  1SVY A;  3Q2B A;  3EG9 B;  3EGD A;  1P8Z G;  1AK7 A;  1T44 G;  5HVK D;  4PKH B;  1M2V A;  4LIZ A;  4PKI G;  1WNJ A;  1P8X A;  3FG6 A;  3EH1 A;  1V6F A;  2HD7 A;  1KCQ A;  5A1M A;  2KVK A;  1AHQ A;  1TVJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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