1KCQA

Human gelsolin domain 2 with a cd2+ bound
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
103
structure length
103
Chain Sequence
VQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHVSEEGTEPEAMLQVLGPKPALPAGTEDTA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Loss of a metal-binding site in gelsolin leads to familial amyloidosis-Finnish type.
pubmed doi rcsb
molecule keywords GELSOLIN
molecule tags Structural protein
source organism Homo sapiens
total genus 32
structure length 103
sequence length 103
ec nomenclature
pdb deposition date 2001-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1kcqA00
1Q8GA 4BEX1 4CBUG 1CFYA 2FH1A 1SVQA 3TU5B 1C0GS 1PCXA 2FH3A 2MP4A 3EH1A 1QPVA 5KYWB 3Q2BA 3CIPG 2NUPA 2QTVA 4LIZA 4KEFA 1T3YA 1TVJA 3FFKA 1CNUA 2FH2A 3FG6A 4KEDA 1NM1G 5KYNA 1T3XA 3DAWB 5KYYA 1VFQA 1PD0A 3A5LS 2VIKA 3L50A 2D8BA 2FF6G 1T2LA 1ESVS 1C0FS 3EGXB 1P8XA 1M2VB 1UDMA 3EG9A 5KYXB 2LXXA 2NUTA 4S10C 5L6WC 3FG7A 1M2OA 2KVKA 1D0NA 1NMDG 1AK6A 1KCQA 1H1VG 2XF1A 5FAEA 1COFA 5KYUA 3EGDB 3A5MS 1SVRA 4KEEA 2L72A 4PKIG 4CBWG 2I2QA 1TMWA 3EFOB 1F7SA 2XFAA 1X67A 2VACA 1HQZ1 5KYWA 2W0IA 4PKGG 1T44G 1SVYA 1DEJS 1WM4A 1D4XG 1MDUA 1Q8XA 2NUTB 1M4JA 2LJ8A 2MV2A 1JHWA 1YAGG 1PD1A 2NUPB 1WFSA 3EGXA 5DD2A 1M2VA 5FAFA 2MOTA 1VKKA 5KYXA 3CJBG 4CBXG 5KYYB 5A1MA 3A5NS 2LLFA 3A5OS 1WNJA 5HVKD 5IVUA 2VILA 3EGDA 3FFNA 3EG9B 1AK7A 3CI5G 2FH4A 4PKHB 1EQYS 1AHQA 1NPHA 1P8ZG 1RGIG 2FF3A 1V6FA 5HVKB 3CJCG 2FGHA 3EFOA 3EH2A 1J72A 2HD7A 5KYUB 1YVNG 1NLVG 4JD2H 4Z94G
chains in the Genus database with same CATH superfamily
1Q8GA 4BEX1 4CBUG 1CFYA 2FH1A 1SVQA 3TU5B 1C0GS 1PCXA 2FH3A 2MP4A 3EH1A 1QPVA 5KYWB 3Q2BA 3CIPG 2NUPA 2QTVA 4LIZA 4KEFA 1T3YA 1TVJA 3FFKA 1CNUA 2FH2A 3FG6A 4KEDA 1NM1G 5KYNA 1T3XA 3DAWB 5KYYA 1VFQA 1PD0A 3A5LS 2VIKA 3L50A 2D8BA 2FF6G 1T2LA 1ESVS 1C0FS 3EGXB 1P8XA 1M2VB 1UDMA 3EG9A 5KYXB 2LXXA 2NUTA 4S10C 5L6WC 3FG7A 1M2OA 2KVKA 1D0NA 1NMDG 1AK6A 1KCQA 1H1VG 2XF1A 5FAEA 1COFA 5KYUA 3EGDB 3A5MS 1SVRA 4KEEA 2L72A 4PKIG 4CBWG 2I2QA 1TMWA 3EFOB 1F7SA 2XFAA 1X67A 2VACA 1HQZ1 5KYWA 2W0IA 4PKGG 1T44G 1SVYA 1DEJS 1WM4A 1D4XG 1MDUA 1Q8XA 2NUTB 1M4JA 2LJ8A 2MV2A 1JHWA 1YAGG 1PD1A 2NUPB 1WFSA 3EGXA 5DD2A 1M2VA 5FAFA 2MOTA 1VKKA 5KYXA 3CJBG 4CBXG 5KYYB 5A1MA 3A5NS 2LLFA 3A5OS 1WNJA 5HVKD 5IVUA 2VILA 3EGDA 3FFNA 3EG9B 1AK7A 3CI5G 2FH4A 4PKHB 1EQYS 1AHQA 1NPHA 1P8ZG 1RGIG 2FF3A 1V6FA 5HVKB 3CJCG 2FGHA 3EFOA 3EH2A 1J72A 3DA7A 2HD7A 5KYUB 1YVNG 1NLVG 4JD2H 4Z94G
chains in the Genus database with same CATH topology
1Q8GA 4BEX1 4CBUG 1CFYA 2FH1A 1SVQA 3TU5B 1C0GS 1PCXA 2FH3A 2MP4A 3EH1A 1QPVA 5KYWB 3Q2BA 3CIPG 2NUPA 2QTVA 4LIZA 4KEFA 1T3YA 1TVJA 3FFKA 1CNUA 2FH2A 3FG6A 4KEDA 1NM1G 5KYNA 1T3XA 3DAWB 5KYYA 1VFQA 1PD0A 3A5LS 2VIKA 3L50A 2D8BA 2FF6G 1T2LA 1ESVS 1C0FS 3EGXB 1P8XA 1M2VB 1UDMA 3EG9A 5KYXB 2LXXA 2NUTA 4S10C 5L6WC 3FG7A 1M2OA 2KVKA 1D0NA 1NMDG 1AK6A 1KCQA 1H1VG 2XF1A 5FAEA 1COFA 5KYUA 3EGDB 3A5MS 1SVRA 4KEEA 2L72A 4PKIG 4CBWG 2I2QA 1TMWA 3EFOB 1F7SA 2XFAA 1X67A 2VACA 1HQZ1 5KYWA 2W0IA 4PKGG 1T44G 1SVYA 1DEJS 1WM4A 1D4XG 1MDUA 1Q8XA 2NUTB 1M4JA 2LJ8A 2MV2A 1JHWA 1YAGG 1PD1A 2NUPB 1WFSA 3EGXA 5DD2A 1M2VA 5FAFA 2MOTA 1VKKA 5KYXA 3CJBG 4CBXG 5KYYB 5A1MA 3A5NS 2LLFA 3A5OS 1WNJA 5HVKD 5IVUA 2VILA 3EGDA 3FFNA 3EG9B 1AK7A 3CI5G 2FH4A 4PKHB 1EQYS 1AHQA 1NPHA 1P8ZG 1RGIG 2FF3A 1V6FA 5HVKB 3CJCG 2FGHA 3EFOA 3EH2A 1J72A 3DA7A 2HD7A 5KYUB 1YVNG 1NLVG 4JD2H 4Z94G
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q8G A;  4BEX 1;  4CBU G;  1CFY A;  2FH1 A;  1SVQ A;  3TU5 B;  1C0G S;  1PCX A;  2FH3 A;  2MP4 A;  3EH1 A;  1QPV A;  5KYW B;  3Q2B A;  3CIP G;  2NUP A;  2QTV A;  4LIZ A;  4KEF A;  1T3Y A;  1TVJ A;  3FFK A;  1CNU A;  2FH2 A;  3FG6 A;  4KED A;  1NM1 G;  5KYN A;  1T3X A;  3DAW B;  5KYY A;  1VFQ A;  1PD0 A;  3A5L S;  2VIK A;  3L50 A;  2D8B A;  2FF6 G;  1T2L A;  1ESV S;  1C0F S;  3EGX B;  1P8X A;  1M2V B;  1UDM A;  3EG9 A;  5KYX B;  2LXX A;  2NUT A;  4S10 C;  5L6W C;  3FG7 A;  1M2O A;  2KVK A;  1D0N A;  1NMD G;  1AK6 A;  1KCQ A;  1H1V G;  2XF1 A;  5FAE A;  1COF A;  5KYU A;  3EGD B;  3A5M S;  1SVR A;  4KEE A;  2L72 A;  4PKI G;  4CBW G;  2I2Q A;  1TMW A;  3EFO B;  1F7S A;  2XFA A;  1X67 A;  2VAC A;  1HQZ 1;  5KYW A;  2W0I A;  4PKG G;  1T44 G;  1SVY A;  1DEJ S;  1WM4 A;  1D4X G;  1MDU A;  1Q8X A;  2NUT B;  1M4J A;  2LJ8 A;  2MV2 A;  1JHW A;  1YAG G;  1PD1 A;  2NUP B;  1WFS A;  3EGX A;  5DD2 A;  1M2V A;  5FAF A;  2MOT A;  1VKK A;  5KYX A;  3CJB G;  4CBX G;  5KYY B;  5A1M A;  3A5N S;  2LLF A;  3A5O S;  1WNJ A;  5HVK D;  5IVU A;  2VIL A;  3EGD A;  3FFN A;  3EG9 B;  1AK7 A;  3CI5 G;  2FH4 A;  4PKH B;  1EQY S;  1AHQ A;  1NPH A;  1P8Z G;  1RGI G;  2FF3 A;  1V6F A;  5HVK B;  3CJC G;  2FGH A;  3EFO A;  3EH2 A;  1J72 A;  2HD7 A;  5KYU B;  1YVN G;  1NLV G;  4JD2 H;  4Z94 G; 
#chains in the Genus database with same CATH topology
 1Q8G A;  4BEX 1;  4CBU G;  1CFY A;  2FH1 A;  1SVQ A;  3TU5 B;  1C0G S;  1PCX A;  2FH3 A;  2MP4 A;  3EH1 A;  1QPV A;  5KYW B;  3Q2B A;  3CIP G;  2NUP A;  2QTV A;  4LIZ A;  4KEF A;  1T3Y A;  1TVJ A;  3FFK A;  1CNU A;  2FH2 A;  3FG6 A;  4KED A;  1NM1 G;  5KYN A;  1T3X A;  3DAW B;  5KYY A;  1VFQ A;  1PD0 A;  3A5L S;  2VIK A;  3L50 A;  2D8B A;  2FF6 G;  1T2L A;  1ESV S;  1C0F S;  3EGX B;  1P8X A;  1M2V B;  1UDM A;  3EG9 A;  5KYX B;  2LXX A;  2NUT A;  4S10 C;  5L6W C;  3FG7 A;  1M2O A;  2KVK A;  1D0N A;  1NMD G;  1AK6 A;  1KCQ A;  1H1V G;  2XF1 A;  5FAE A;  1COF A;  5KYU A;  3EGD B;  3A5M S;  1SVR A;  4KEE A;  2L72 A;  4PKI G;  4CBW G;  2I2Q A;  1TMW A;  3EFO B;  1F7S A;  2XFA A;  1X67 A;  2VAC A;  1HQZ 1;  5KYW A;  2W0I A;  4PKG G;  1T44 G;  1SVY A;  1DEJ S;  1WM4 A;  1D4X G;  1MDU A;  1Q8X A;  2NUT B;  1M4J A;  2LJ8 A;  2MV2 A;  1JHW A;  1YAG G;  1PD1 A;  2NUP B;  1WFS A;  3EGX A;  5DD2 A;  1M2V A;  5FAF A;  2MOT A;  1VKK A;  5KYX A;  3CJB G;  4CBX G;  5KYY B;  5A1M A;  3A5N S;  2LLF A;  3A5O S;  1WNJ A;  5HVK D;  5IVU A;  2VIL A;  3EGD A;  3FFN A;  3EG9 B;  1AK7 A;  3CI5 G;  2FH4 A;  4PKH B;  1EQY S;  1AHQ A;  1NPH A;  1P8Z G;  1RGI G;  2FF3 A;  1V6F A;  5HVK B;  3CJC G;  2FGH A;  3EFO A;  3EH2 A;  1J72 A;  3DA7 A;  2HD7 A;  5KYU B;  1YVN G;  1NLV G;  4JD2 H;  4Z94 G; 
#chains in the Genus database with same CATH homology
 1Q8G A;  4BEX 1;  4CBU G;  1CFY A;  2FH1 A;  1SVQ A;  3TU5 B;  1C0G S;  1PCX A;  2FH3 A;  2MP4 A;  3EH1 A;  1QPV A;  5KYW B;  3Q2B A;  3CIP G;  2NUP A;  2QTV A;  4LIZ A;  4KEF A;  1T3Y A;  1TVJ A;  3FFK A;  1CNU A;  2FH2 A;  3FG6 A;  4KED A;  1NM1 G;  5KYN A;  1T3X A;  3DAW B;  5KYY A;  1VFQ A;  1PD0 A;  3A5L S;  2VIK A;  3L50 A;  2D8B A;  2FF6 G;  1T2L A;  1ESV S;  1C0F S;  3EGX B;  1P8X A;  1M2V B;  1UDM A;  3EG9 A;  5KYX B;  2LXX A;  2NUT A;  4S10 C;  5L6W C;  3FG7 A;  1M2O A;  2KVK A;  1D0N A;  1NMD G;  1AK6 A;  1KCQ A;  1H1V G;  2XF1 A;  5FAE A;  1COF A;  5KYU A;  3EGD B;  3A5M S;  1SVR A;  4KEE A;  2L72 A;  4PKI G;  4CBW G;  2I2Q A;  1TMW A;  3EFO B;  1F7S A;  2XFA A;  1X67 A;  2VAC A;  1HQZ 1;  5KYW A;  2W0I A;  4PKG G;  1T44 G;  1SVY A;  1DEJ S;  1WM4 A;  1D4X G;  1MDU A;  1Q8X A;  2NUT B;  1M4J A;  2LJ8 A;  2MV2 A;  1JHW A;  1YAG G;  1PD1 A;  2NUP B;  1WFS A;  3EGX A;  5DD2 A;  1M2V A;  5FAF A;  2MOT A;  1VKK A;  5KYX A;  3CJB G;  4CBX G;  5KYY B;  5A1M A;  3A5N S;  2LLF A;  3A5O S;  1WNJ A;  5HVK D;  5IVU A;  2VIL A;  3EGD A;  3FFN A;  3EG9 B;  1AK7 A;  3CI5 G;  2FH4 A;  4PKH B;  1EQY S;  1AHQ A;  1NPH A;  1P8Z G;  1RGI G;  2FF3 A;  1V6F A;  5HVK B;  3CJC G;  2FGH A;  3EFO A;  3EH2 A;  1J72 A;  3DA7 A;  2HD7 A;  5KYU B;  1YVN G;  1NLV G;  4JD2 H;  4Z94 G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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