1M4JA

Crystal structure of the n-terminal adf-h domain of mouse twinfilin isoform-1
Total Genus 40
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
133
structure length
133
Chain Sequence
IQASEDVKEIFARARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVLFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural Conservation Between the Actin Monomer-binding Sites of Twinfilin and Actin-depolymerizing Factor (ADF)/Cofilin
pubmed doi rcsb
molecule keywords A6 gene product
molecule tags Structural protein
source organism Mus musculus
total genus 40
structure length 133
sequence length 133
chains with identical sequence B
ec nomenclature
pdb deposition date 2002-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1m4jA00
3EG9A 3FG6A 1T44G 5KYUA 3EH2A 3TU5B 1P8ZG 2MOTA 1M2OA 1T3YA 1VKKA 1YAGG 1T2LA 1C0FS 3A5LS 1M4JA 5KYYA 4CBWG 1PD1A 2FH1A 5KYNA 1CFYA 2LLFA 3EFOB 1C0GS 1EQYS 1COFA 2FGHA 2VILA 1QPVA 1ESVS 2LXXA 3FFNA 5HVKD 1D4XG 4JD2H 5KYWB 1V6FA 1KCQA 2W0IA 3EGXB 3CI5G 2LJ8A 1SVRA 1NMDG 4CBUG 1JHWA 2MP4A 1VFQA 5IVUA 1SVYA 4LIZA 5KYUB 2FH3A 1AK7A 1UDMA 4PKIG 5DD2A 1CNUA 2XFAA 3Q2BA 2NUPA 2D8BA 4CBXG 1T3XA 3EGDA 1MDUA 3A5NS 2VACA 2XF1A 2L72A 1SVQA 1TVJA 1PCXA 3L50A 5KYXB 2FF3A 4PKHB 1M2VB 1AK6A 5FAFA 2FH2A 2NUTB 2FH4A 1D0NA 3EG9B 5L6WC 1H1VG 2FF6G 4KEEA 4PKGG 1AHQA 4Z94G 4S10C 5HVKB 1HQZ1 3EFOA 3FFKA 3DAWB 1WM4A 5KYYB 3CJCG 1J72A 1DEJS 5KYWA 2I2QA 1Q8XA 3FG7A 2VIKA 1WFSA 3EGXA 1F7SA 1P8XA 1TMWA 3A5MS 4KEDA 1X67A 1YVNG 1PD0A 2MV2A 1NLVG 4BEX1 2KVKA 1NM1G 4KEFA 2QTVA 1Q8GA 5A1MA 2NUPB 5KYXA 1RGIG 5FAEA 1M2VA 3CJBG 1WNJA 3A5OS 2HD7A 3EGDB 2NUTA 1NPHA 3CIPG 3EH1A
chains in the Genus database with same CATH superfamily
3EG9A 3FG6A 1T44G 5KYUA 3EH2A 3TU5B 1P8ZG 2MOTA 1M2OA 1T3YA 1VKKA 1YAGG 1T2LA 1C0FS 3A5LS 1M4JA 5KYYA 4CBWG 1PD1A 2FH1A 5KYNA 1CFYA 2LLFA 3EFOB 1C0GS 1EQYS 1COFA 2FGHA 2VILA 1QPVA 1ESVS 2LXXA 3FFNA 5HVKD 1D4XG 4JD2H 5KYWB 1V6FA 1KCQA 2W0IA 3EGXB 3CI5G 2LJ8A 1SVRA 1NMDG 4CBUG 1JHWA 2MP4A 1VFQA 5IVUA 1SVYA 4LIZA 5KYUB 2FH3A 1AK7A 1UDMA 4PKIG 5DD2A 1CNUA 2XFAA 3Q2BA 2NUPA 2D8BA 4CBXG 1T3XA 3EGDA 1MDUA 3A5NS 2VACA 2XF1A 2L72A 1SVQA 1TVJA 1PCXA 3L50A 5KYXB 2FF3A 4PKHB 1M2VB 1AK6A 5FAFA 2FH2A 2NUTB 2FH4A 1D0NA 3EG9B 5L6WC 1H1VG 2FF6G 4KEEA 4PKGG 1AHQA 4Z94G 4S10C 5HVKB 3DA7A 1HQZ1 3EFOA 3FFKA 3DAWB 1WM4A 5KYYB 3CJCG 1J72A 1DEJS 5KYWA 2I2QA 1Q8XA 3FG7A 2VIKA 1WFSA 3EGXA 1F7SA 1P8XA 1TMWA 3A5MS 4KEDA 1X67A 1YVNG 1PD0A 2MV2A 1NLVG 4BEX1 2KVKA 1NM1G 4KEFA 2QTVA 1Q8GA 5A1MA 2NUPB 5KYXA 1RGIG 5FAEA 1M2VA 3CJBG 1WNJA 3A5OS 2HD7A 3EGDB 2NUTA 1NPHA 3CIPG 3EH1A
chains in the Genus database with same CATH topology
3EG9A 3FG6A 1T44G 5KYUA 3EH2A 3TU5B 1P8ZG 2MOTA 1M2OA 1T3YA 1VKKA 1YAGG 1T2LA 1C0FS 3A5LS 1M4JA 5KYYA 4CBWG 1PD1A 2FH1A 5KYNA 1CFYA 2LLFA 3EFOB 1C0GS 1EQYS 1COFA 2FGHA 2VILA 1QPVA 1ESVS 2LXXA 3FFNA 5HVKD 1D4XG 4JD2H 5KYWB 1V6FA 1KCQA 2W0IA 3EGXB 3CI5G 2LJ8A 1SVRA 1NMDG 4CBUG 1JHWA 2MP4A 1VFQA 5IVUA 1SVYA 4LIZA 5KYUB 2FH3A 1AK7A 1UDMA 4PKIG 5DD2A 1CNUA 2XFAA 3Q2BA 2NUPA 2D8BA 4CBXG 1T3XA 3EGDA 1MDUA 3A5NS 2VACA 2XF1A 2L72A 1SVQA 1TVJA 1PCXA 3L50A 5KYXB 2FF3A 4PKHB 1M2VB 1AK6A 5FAFA 2FH2A 2NUTB 2FH4A 1D0NA 3EG9B 5L6WC 1H1VG 2FF6G 4KEEA 4PKGG 1AHQA 4Z94G 4S10C 5HVKB 3DA7A 1HQZ1 3EFOA 3FFKA 3DAWB 1WM4A 5KYYB 3CJCG 1J72A 1DEJS 5KYWA 2I2QA 1Q8XA 3FG7A 2VIKA 1WFSA 3EGXA 1F7SA 1P8XA 1TMWA 3A5MS 4KEDA 1X67A 1YVNG 1PD0A 2MV2A 1NLVG 4BEX1 2KVKA 1NM1G 4KEFA 2QTVA 1Q8GA 5A1MA 2NUPB 5KYXA 1RGIG 5FAEA 1M2VA 3CJBG 1WNJA 3A5OS 2HD7A 3EGDB 2NUTA 1NPHA 3CIPG 3EH1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EG9 A;  3FG6 A;  1T44 G;  5KYU A;  3EH2 A;  3TU5 B;  1P8Z G;  2MOT A;  1M2O A;  1T3Y A;  1VKK A;  1YAG G;  1T2L A;  1C0F S;  3A5L S;  1M4J A;  5KYY A;  4CBW G;  1PD1 A;  2FH1 A;  5KYN A;  1CFY A;  2LLF A;  3EFO B;  1C0G S;  1EQY S;  1COF A;  2FGH A;  2VIL A;  1QPV A;  1ESV S;  2LXX A;  3FFN A;  5HVK D;  1D4X G;  4JD2 H;  5KYW B;  1V6F A;  1KCQ A;  2W0I A;  3EGX B;  3CI5 G;  2LJ8 A;  1SVR A;  1NMD G;  4CBU G;  1JHW A;  2MP4 A;  1VFQ A;  5IVU A;  1SVY A;  4LIZ A;  5KYU B;  2FH3 A;  1AK7 A;  1UDM A;  4PKI G;  5DD2 A;  1CNU A;  2XFA A;  3Q2B A;  2NUP A;  2D8B A;  4CBX G;  1T3X A;  3EGD A;  1MDU A;  3A5N S;  2VAC A;  2XF1 A;  2L72 A;  1SVQ A;  1TVJ A;  1PCX A;  3L50 A;  5KYX B;  2FF3 A;  4PKH B;  1M2V B;  1AK6 A;  5FAF A;  2FH2 A;  2NUT B;  2FH4 A;  1D0N A;  3EG9 B;  5L6W C;  1H1V G;  2FF6 G;  4KEE A;  4PKG G;  1AHQ A;  4Z94 G;  4S10 C;  5HVK B;  1HQZ 1;  3EFO A;  3FFK A;  3DAW B;  1WM4 A;  5KYY B;  3CJC G;  1J72 A;  1DEJ S;  5KYW A;  2I2Q A;  1Q8X A;  3FG7 A;  2VIK A;  1WFS A;  3EGX A;  1F7S A;  1P8X A;  1TMW A;  3A5M S;  4KED A;  1X67 A;  1YVN G;  1PD0 A;  2MV2 A;  1NLV G;  4BEX 1;  2KVK A;  1NM1 G;  4KEF A;  2QTV A;  1Q8G A;  5A1M A;  2NUP B;  5KYX A;  1RGI G;  5FAE A;  1M2V A;  3CJB G;  1WNJ A;  3A5O S;  2HD7 A;  3EGD B;  2NUT A;  1NPH A;  3CIP G;  3EH1 A; 
#chains in the Genus database with same CATH topology
 3EG9 A;  3FG6 A;  1T44 G;  5KYU A;  3EH2 A;  3TU5 B;  1P8Z G;  2MOT A;  1M2O A;  1T3Y A;  1VKK A;  1YAG G;  1T2L A;  1C0F S;  3A5L S;  1M4J A;  5KYY A;  4CBW G;  1PD1 A;  2FH1 A;  5KYN A;  1CFY A;  2LLF A;  3EFO B;  1C0G S;  1EQY S;  1COF A;  2FGH A;  2VIL A;  1QPV A;  1ESV S;  2LXX A;  3FFN A;  5HVK D;  1D4X G;  4JD2 H;  5KYW B;  1V6F A;  1KCQ A;  2W0I A;  3EGX B;  3CI5 G;  2LJ8 A;  1SVR A;  1NMD G;  4CBU G;  1JHW A;  2MP4 A;  1VFQ A;  5IVU A;  1SVY A;  4LIZ A;  5KYU B;  2FH3 A;  1AK7 A;  1UDM A;  4PKI G;  5DD2 A;  1CNU A;  2XFA A;  3Q2B A;  2NUP A;  2D8B A;  4CBX G;  1T3X A;  3EGD A;  1MDU A;  3A5N S;  2VAC A;  2XF1 A;  2L72 A;  1SVQ A;  1TVJ A;  1PCX A;  3L50 A;  5KYX B;  2FF3 A;  4PKH B;  1M2V B;  1AK6 A;  5FAF A;  2FH2 A;  2NUT B;  2FH4 A;  1D0N A;  3EG9 B;  5L6W C;  1H1V G;  2FF6 G;  4KEE A;  4PKG G;  1AHQ A;  4Z94 G;  4S10 C;  5HVK B;  3DA7 A;  1HQZ 1;  3EFO A;  3FFK A;  3DAW B;  1WM4 A;  5KYY B;  3CJC G;  1J72 A;  1DEJ S;  5KYW A;  2I2Q A;  1Q8X A;  3FG7 A;  2VIK A;  1WFS A;  3EGX A;  1F7S A;  1P8X A;  1TMW A;  3A5M S;  4KED A;  1X67 A;  1YVN G;  1PD0 A;  2MV2 A;  1NLV G;  4BEX 1;  2KVK A;  1NM1 G;  4KEF A;  2QTV A;  1Q8G A;  5A1M A;  2NUP B;  5KYX A;  1RGI G;  5FAE A;  1M2V A;  3CJB G;  1WNJ A;  3A5O S;  2HD7 A;  3EGD B;  2NUT A;  1NPH A;  3CIP G;  3EH1 A; 
#chains in the Genus database with same CATH homology
 3EG9 A;  3FG6 A;  1T44 G;  5KYU A;  3EH2 A;  3TU5 B;  1P8Z G;  2MOT A;  1M2O A;  1T3Y A;  1VKK A;  1YAG G;  1T2L A;  1C0F S;  3A5L S;  1M4J A;  5KYY A;  4CBW G;  1PD1 A;  2FH1 A;  5KYN A;  1CFY A;  2LLF A;  3EFO B;  1C0G S;  1EQY S;  1COF A;  2FGH A;  2VIL A;  1QPV A;  1ESV S;  2LXX A;  3FFN A;  5HVK D;  1D4X G;  4JD2 H;  5KYW B;  1V6F A;  1KCQ A;  2W0I A;  3EGX B;  3CI5 G;  2LJ8 A;  1SVR A;  1NMD G;  4CBU G;  1JHW A;  2MP4 A;  1VFQ A;  5IVU A;  1SVY A;  4LIZ A;  5KYU B;  2FH3 A;  1AK7 A;  1UDM A;  4PKI G;  5DD2 A;  1CNU A;  2XFA A;  3Q2B A;  2NUP A;  2D8B A;  4CBX G;  1T3X A;  3EGD A;  1MDU A;  3A5N S;  2VAC A;  2XF1 A;  2L72 A;  1SVQ A;  1TVJ A;  1PCX A;  3L50 A;  5KYX B;  2FF3 A;  4PKH B;  1M2V B;  1AK6 A;  5FAF A;  2FH2 A;  2NUT B;  2FH4 A;  1D0N A;  3EG9 B;  5L6W C;  1H1V G;  2FF6 G;  4KEE A;  4PKG G;  1AHQ A;  4Z94 G;  4S10 C;  5HVK B;  3DA7 A;  1HQZ 1;  3EFO A;  3FFK A;  3DAW B;  1WM4 A;  5KYY B;  3CJC G;  1J72 A;  1DEJ S;  5KYW A;  2I2Q A;  1Q8X A;  3FG7 A;  2VIK A;  1WFS A;  3EGX A;  1F7S A;  1P8X A;  1TMW A;  3A5M S;  4KED A;  1X67 A;  1YVN G;  1PD0 A;  2MV2 A;  1NLV G;  4BEX 1;  2KVK A;  1NM1 G;  4KEF A;  2QTV A;  1Q8G A;  5A1M A;  2NUP B;  5KYX A;  1RGI G;  5FAE A;  1M2V A;  3CJB G;  1WNJ A;  3A5O S;  2HD7 A;  3EGD B;  2NUT A;  1NPH A;  3CIP G;  3EH1 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...