1NLVG

Crystal structure of dictyostelium discoideum actin complexed with ca atp and human gelsolin segment 1
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
123
structure length
123
Chain Sequence
VEHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Structure of Non-Vertebrate Actin: Implications For The ATP Hydrolytic Mechanism
pubmed doi rcsb
molecule tags Structural protein
source organism Homo sapiens
molecule keywords Actin
total genus 41
structure length 123
sequence length 123
ec nomenclature
pdb deposition date 2003-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1nlvG00
1C0FS 2QTVA 1M2OA 4S10C 1NM1G 2FF6G 2NUTB 3FFKA 5KYXB 1JHWA 1J72A 3EFOA 3L50A 5HVKD 1WM4A 1D4XG 2KVKA 3EGDA 4JD2H 1WFSA 1M4JA 2VILA 4BEX1 1UDMA 1PCXA 5KYUA 2VACA 3A5LS 2NUPB 1DEJS 1VFQA 3Q2BA 1YVNG 4PKGG 1YAGG 1V6FA 1Q8GA 1MDUA 2HD7A 1CNUA 2VIKA 3EGXA 5A1MA 1EQYS 1M2VB 4PKHB 5FAEA 1CFYA 1SVRA 2FF3A 1T2LA 2L72A 3TU5B 4Z94G 1KCQA 1P8XA 5KYYB 3EH1A 1C0GS 3FFNA 2FH4A 5KYWA 3EH2A 1AK7A 2MP4A 1NMDG 3CJBG 5KYNA 2MOTA 2NUPA 2XF1A 4LIZA 5FAFA 3A5MS 1SVYA 4KEEA 2LJ8A 1QPVA 3EG9B 2FGHA 4KEFA 1NLVG 3FG7A 4CBUG 5KYYA 2NUTA 1Q8XA 5KYXA 1AHQA 2XFAA 1TVJA 1VKKA 3EFOB 4CBWG 1COFA 2FH1A 3EGDB 1WNJA 2FH2A 1P8ZG 1TMWA 1HQZ1 5KYUB 2I2QA 1PD1A 5L6WC 1RGIG 3EG9A 1PD0A 1X67A 1M2VA 3EGXB 1AK6A 2FH3A 2LLFA 1SVQA 5DD2A 3CI5G 2LXXA 1H1VG 2MV2A 1D0NA 1F7SA 1T3YA 1T3XA 5IVUA 5HVKB 4KEDA 5KYWB 3DAWB 3CIPG 3A5NS 2W0IA 3FG6A 4PKIG 1NPHA 2D8BA 1ESVS 3A5OS 4CBXG 1T44G 3CJCG
chains in the Genus database with same CATH superfamily
1C0FS 2QTVA 1M2OA 4S10C 1NM1G 2FF6G 2NUTB 3FFKA 5KYXB 1JHWA 1J72A 3EFOA 3L50A 5HVKD 1WM4A 1D4XG 2KVKA 3EGDA 4JD2H 1WFSA 1M4JA 2VILA 4BEX1 1UDMA 1PCXA 5KYUA 2VACA 3A5LS 2NUPB 1DEJS 1VFQA 3Q2BA 1YVNG 4PKGG 1YAGG 1V6FA 1Q8GA 1MDUA 2HD7A 1CNUA 2VIKA 3DA7A 3EGXA 5A1MA 1EQYS 1M2VB 4PKHB 5FAEA 1CFYA 1SVRA 2FF3A 1T2LA 2L72A 3TU5B 4Z94G 1KCQA 1P8XA 5KYYB 3EH1A 1C0GS 3FFNA 2FH4A 5KYWA 3EH2A 1AK7A 2MP4A 1NMDG 3CJBG 5KYNA 2MOTA 2NUPA 2XF1A 4LIZA 5FAFA 3A5MS 1SVYA 4KEEA 2LJ8A 1QPVA 3EG9B 2FGHA 4KEFA 1NLVG 3FG7A 4CBUG 5KYYA 2NUTA 1Q8XA 5KYXA 1AHQA 2XFAA 1TVJA 1VKKA 3EFOB 4CBWG 1COFA 2FH1A 3EGDB 1WNJA 2FH2A 1P8ZG 1TMWA 1HQZ1 5KYUB 2I2QA 1PD1A 5L6WC 1RGIG 3EG9A 1PD0A 1X67A 1M2VA 3EGXB 1AK6A 2FH3A 2LLFA 1SVQA 5DD2A 3CI5G 2LXXA 1H1VG 2MV2A 1D0NA 1F7SA 1T3YA 1T3XA 5IVUA 5HVKB 4KEDA 5KYWB 3DAWB 3CIPG 3A5NS 2W0IA 3FG6A 4PKIG 1NPHA 2D8BA 1ESVS 3A5OS 4CBXG 1T44G 3CJCG
chains in the Genus database with same CATH topology
1C0FS 2QTVA 1M2OA 4S10C 1NM1G 2FF6G 2NUTB 3FFKA 5KYXB 1JHWA 1J72A 3EFOA 3L50A 5HVKD 1WM4A 1D4XG 2KVKA 3EGDA 4JD2H 1WFSA 1M4JA 2VILA 4BEX1 1UDMA 1PCXA 5KYUA 2VACA 3A5LS 2NUPB 1DEJS 1VFQA 3Q2BA 1YVNG 4PKGG 1YAGG 1V6FA 1Q8GA 1MDUA 2HD7A 1CNUA 2VIKA 3DA7A 3EGXA 5A1MA 1EQYS 1M2VB 4PKHB 5FAEA 1CFYA 1SVRA 2FF3A 1T2LA 2L72A 3TU5B 4Z94G 1KCQA 1P8XA 5KYYB 3EH1A 1C0GS 3FFNA 2FH4A 5KYWA 3EH2A 1AK7A 2MP4A 1NMDG 3CJBG 5KYNA 2MOTA 2NUPA 2XF1A 4LIZA 5FAFA 3A5MS 1SVYA 4KEEA 2LJ8A 1QPVA 3EG9B 2FGHA 4KEFA 1NLVG 3FG7A 4CBUG 5KYYA 2NUTA 1Q8XA 5KYXA 1AHQA 2XFAA 1TVJA 1VKKA 3EFOB 4CBWG 1COFA 2FH1A 3EGDB 1WNJA 2FH2A 1P8ZG 1TMWA 1HQZ1 5KYUB 2I2QA 1PD1A 5L6WC 1RGIG 3EG9A 1PD0A 1X67A 1M2VA 3EGXB 1AK6A 2FH3A 2LLFA 1SVQA 5DD2A 3CI5G 2LXXA 1H1VG 2MV2A 1D0NA 1F7SA 1T3YA 1T3XA 5IVUA 5HVKB 4KEDA 5KYWB 3DAWB 3CIPG 3A5NS 2W0IA 3FG6A 4PKIG 1NPHA 2D8BA 1ESVS 3A5OS 4CBXG 1T44G 3CJCG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1C0F S;  2QTV A;  1M2O A;  4S10 C;  1NM1 G;  2FF6 G;  2NUT B;  3FFK A;  5KYX B;  1JHW A;  1J72 A;  3EFO A;  3L50 A;  5HVK D;  1WM4 A;  1D4X G;  2KVK A;  3EGD A;  4JD2 H;  1WFS A;  1M4J A;  2VIL A;  4BEX 1;  1UDM A;  1PCX A;  5KYU A;  2VAC A;  3A5L S;  2NUP B;  1DEJ S;  1VFQ A;  3Q2B A;  1YVN G;  4PKG G;  1YAG G;  1V6F A;  1Q8G A;  1MDU A;  2HD7 A;  1CNU A;  2VIK A;  3EGX A;  5A1M A;  1EQY S;  1M2V B;  4PKH B;  5FAE A;  1CFY A;  1SVR A;  2FF3 A;  1T2L A;  2L72 A;  3TU5 B;  4Z94 G;  1KCQ A;  1P8X A;  5KYY B;  3EH1 A;  1C0G S;  3FFN A;  2FH4 A;  5KYW A;  3EH2 A;  1AK7 A;  2MP4 A;  1NMD G;  3CJB G;  5KYN A;  2MOT A;  2NUP A;  2XF1 A;  4LIZ A;  5FAF A;  3A5M S;  1SVY A;  4KEE A;  2LJ8 A;  1QPV A;  3EG9 B;  2FGH A;  4KEF A;  1NLV G;  3FG7 A;  4CBU G;  5KYY A;  2NUT A;  1Q8X A;  5KYX A;  1AHQ A;  2XFA A;  1TVJ A;  1VKK A;  3EFO B;  4CBW G;  1COF A;  2FH1 A;  3EGD B;  1WNJ A;  2FH2 A;  1P8Z G;  1TMW A;  1HQZ 1;  5KYU B;  2I2Q A;  1PD1 A;  5L6W C;  1RGI G;  3EG9 A;  1PD0 A;  1X67 A;  1M2V A;  3EGX B;  1AK6 A;  2FH3 A;  2LLF A;  1SVQ A;  5DD2 A;  3CI5 G;  2LXX A;  1H1V G;  2MV2 A;  1D0N A;  1F7S A;  1T3Y A;  1T3X A;  5IVU A;  5HVK B;  4KED A;  5KYW B;  3DAW B;  3CIP G;  3A5N S;  2W0I A;  3FG6 A;  4PKI G;  1NPH A;  2D8B A;  1ESV S;  3A5O S;  4CBX G;  1T44 G;  3CJC G; 
#chains in the Genus database with same CATH topology
 1C0F S;  2QTV A;  1M2O A;  4S10 C;  1NM1 G;  2FF6 G;  2NUT B;  3FFK A;  5KYX B;  1JHW A;  1J72 A;  3EFO A;  3L50 A;  5HVK D;  1WM4 A;  1D4X G;  2KVK A;  3EGD A;  4JD2 H;  1WFS A;  1M4J A;  2VIL A;  4BEX 1;  1UDM A;  1PCX A;  5KYU A;  2VAC A;  3A5L S;  2NUP B;  1DEJ S;  1VFQ A;  3Q2B A;  1YVN G;  4PKG G;  1YAG G;  1V6F A;  1Q8G A;  1MDU A;  2HD7 A;  1CNU A;  2VIK A;  3DA7 A;  3EGX A;  5A1M A;  1EQY S;  1M2V B;  4PKH B;  5FAE A;  1CFY A;  1SVR A;  2FF3 A;  1T2L A;  2L72 A;  3TU5 B;  4Z94 G;  1KCQ A;  1P8X A;  5KYY B;  3EH1 A;  1C0G S;  3FFN A;  2FH4 A;  5KYW A;  3EH2 A;  1AK7 A;  2MP4 A;  1NMD G;  3CJB G;  5KYN A;  2MOT A;  2NUP A;  2XF1 A;  4LIZ A;  5FAF A;  3A5M S;  1SVY A;  4KEE A;  2LJ8 A;  1QPV A;  3EG9 B;  2FGH A;  4KEF A;  1NLV G;  3FG7 A;  4CBU G;  5KYY A;  2NUT A;  1Q8X A;  5KYX A;  1AHQ A;  2XFA A;  1TVJ A;  1VKK A;  3EFO B;  4CBW G;  1COF A;  2FH1 A;  3EGD B;  1WNJ A;  2FH2 A;  1P8Z G;  1TMW A;  1HQZ 1;  5KYU B;  2I2Q A;  1PD1 A;  5L6W C;  1RGI G;  3EG9 A;  1PD0 A;  1X67 A;  1M2V A;  3EGX B;  1AK6 A;  2FH3 A;  2LLF A;  1SVQ A;  5DD2 A;  3CI5 G;  2LXX A;  1H1V G;  2MV2 A;  1D0N A;  1F7S A;  1T3Y A;  1T3X A;  5IVU A;  5HVK B;  4KED A;  5KYW B;  3DAW B;  3CIP G;  3A5N S;  2W0I A;  3FG6 A;  4PKI G;  1NPH A;  2D8B A;  1ESV S;  3A5O S;  4CBX G;  1T44 G;  3CJC G; 
#chains in the Genus database with same CATH homology
 1C0F S;  2QTV A;  1M2O A;  4S10 C;  1NM1 G;  2FF6 G;  2NUT B;  3FFK A;  5KYX B;  1JHW A;  1J72 A;  3EFO A;  3L50 A;  5HVK D;  1WM4 A;  1D4X G;  2KVK A;  3EGD A;  4JD2 H;  1WFS A;  1M4J A;  2VIL A;  4BEX 1;  1UDM A;  1PCX A;  5KYU A;  2VAC A;  3A5L S;  2NUP B;  1DEJ S;  1VFQ A;  3Q2B A;  1YVN G;  4PKG G;  1YAG G;  1V6F A;  1Q8G A;  1MDU A;  2HD7 A;  1CNU A;  2VIK A;  3DA7 A;  3EGX A;  5A1M A;  1EQY S;  1M2V B;  4PKH B;  5FAE A;  1CFY A;  1SVR A;  2FF3 A;  1T2L A;  2L72 A;  3TU5 B;  4Z94 G;  1KCQ A;  1P8X A;  5KYY B;  3EH1 A;  1C0G S;  3FFN A;  2FH4 A;  5KYW A;  3EH2 A;  1AK7 A;  2MP4 A;  1NMD G;  3CJB G;  5KYN A;  2MOT A;  2NUP A;  2XF1 A;  4LIZ A;  5FAF A;  3A5M S;  1SVY A;  4KEE A;  2LJ8 A;  1QPV A;  3EG9 B;  2FGH A;  4KEF A;  1NLV G;  3FG7 A;  4CBU G;  5KYY A;  2NUT A;  1Q8X A;  5KYX A;  1AHQ A;  2XFA A;  1TVJ A;  1VKK A;  3EFO B;  4CBW G;  1COF A;  2FH1 A;  3EGD B;  1WNJ A;  2FH2 A;  1P8Z G;  1TMW A;  1HQZ 1;  5KYU B;  2I2Q A;  1PD1 A;  5L6W C;  1RGI G;  3EG9 A;  1PD0 A;  1X67 A;  1M2V A;  3EGX B;  1AK6 A;  2FH3 A;  2LLF A;  1SVQ A;  5DD2 A;  3CI5 G;  2LXX A;  1H1V G;  2MV2 A;  1D0N A;  1F7S A;  1T3Y A;  1T3X A;  5IVU A;  5HVK B;  4KED A;  5KYW B;  3DAW B;  3CIP G;  3A5N S;  2W0I A;  3FG6 A;  4PKI G;  1NPH A;  2D8B A;  1ESV S;  3A5O S;  4CBX G;  1T44 G;  3CJC G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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