1X67A

Solution structure of the cofilin homology domain of hip-55 (drebrin-like protein)
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
146
structure length
146
Chain Sequence
GSSGSSGMAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEEMVEELNSGKVMYAFCRVKDPNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHVTINARAEEDVEPECIMEKVASGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title NMR solution structures of actin depolymerizing factor homology domains.
pubmed doi rcsb
molecule keywords Drebrin-like protein
molecule tags Protein binding
source organism Homo sapiens
total genus 21
structure length 146
sequence length 146
ec nomenclature
pdb deposition date 2005-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 1x67A01
1T3YA 2FH3A 2I2QA 3CIPG 2XF1A 2LJ8A 1EQYS 1SVRA 1NPHA 1M4JA 1H1VG 3L50A 4KEDA 3A5OS 1TMWA 4CBUG 1AK7A 4LIZA 2FH1A 2MOTA 4CBWG 3FG6A 5KYYB 5A1MA 1MDUA 5KYWB 4JD2H 1T3XA 3EGXA 3FFKA 1NMDG 1ESVS 2FH2A 4PKIG 1CFYA 1F7SA 4Z94G 2LLFA 4KEFA 2HD7A 1PCXA 1PD0A 3EGXB 1D4XG 2MP4A 1C0GS 1D0NA 5KYYA 2NUPB 5KYWA 1P8XA 5HVKD 3EG9A 3A5NS 1AHQA 4S10C 2NUTB 3DAWB 2D8BA 1V6FA 2FF3A 3TU5B 1SVQA 2KVKA 4BEX1 1KCQA 2NUPA 3EG9B 1J72A 5L6WC 3EH1A 1C0FS 2W0IA 1COFA 4CBXG 4KEEA 1NLVG 1PD1A 5KYXB 1NM1G 2VACA 1QPVA 1VFQA 2FH4A 2L72A 2VILA 2FGHA 2NUTA 2XFAA 5IVUA 5DD2A 1WFSA 5FAEA 4PKGG 4PKHB 3EFOB 3EGDB 1P8ZG 2VIKA 1T44G 2MV2A 1DEJS 1Q8XA 1M2VA 3FG7A 3A5LS 3EH2A 5FAFA 1M2OA 5HVKB 5KYUB 1JHWA 3FFNA 3CJBG 5KYXA 1Q8GA 1TVJA 3CI5G 1YAGG 3CJCG 3Q2BA 1WNJA 1M2VB 1T2LA 1X67A 1SVYA 1YVNG 2QTVA 3EFOA 3EGDA 1HQZ1 1AK6A 1WM4A 2LXXA 1UDMA 3A5MS 1RGIG 5KYUA 2FF6G 5KYNA 1CNUA 1VKKA
chains in the Genus database with same CATH superfamily
1T3YA 2FH3A 2I2QA 3CIPG 2XF1A 2LJ8A 1EQYS 1SVRA 1NPHA 1M4JA 1H1VG 3L50A 4KEDA 3A5OS 1TMWA 4CBUG 1AK7A 4LIZA 2FH1A 2MOTA 4CBWG 3FG6A 5KYYB 5A1MA 1MDUA 5KYWB 4JD2H 1T3XA 3EGXA 3FFKA 1NMDG 1ESVS 2FH2A 4PKIG 1CFYA 1F7SA 4Z94G 2LLFA 4KEFA 2HD7A 1PCXA 1PD0A 3EGXB 1D4XG 2MP4A 1C0GS 1D0NA 5KYYA 2NUPB 5KYWA 1P8XA 5HVKD 3EG9A 3A5NS 1AHQA 4S10C 2NUTB 3DAWB 2D8BA 1V6FA 2FF3A 3TU5B 1SVQA 2KVKA 4BEX1 1KCQA 2NUPA 3EG9B 1J72A 5L6WC 3EH1A 1C0FS 2W0IA 1COFA 4CBXG 4KEEA 1NLVG 1PD1A 5KYXB 1NM1G 2VACA 1QPVA 1VFQA 2FH4A 2L72A 2VILA 2FGHA 2NUTA 2XFAA 5IVUA 5DD2A 1WFSA 5FAEA 4PKGG 4PKHB 3EFOB 3EGDB 1P8ZG 2VIKA 1T44G 2MV2A 1DEJS 1Q8XA 1M2VA 3FG7A 3A5LS 3EH2A 5FAFA 1M2OA 5HVKB 5KYUB 1JHWA 3FFNA 3CJBG 5KYXA 1Q8GA 1TVJA 3CI5G 1YAGG 3CJCG 3Q2BA 1WNJA 1M2VB 1T2LA 1X67A 1SVYA 1YVNG 2QTVA 3EFOA 3EGDA 1HQZ1 1AK6A 1WM4A 2LXXA 1UDMA 3A5MS 1RGIG 5KYUA 3DA7A 2FF6G 5KYNA 1CNUA 1VKKA
chains in the Genus database with same CATH topology
1T3YA 2FH3A 2I2QA 3CIPG 2XF1A 2LJ8A 1EQYS 1SVRA 1NPHA 1M4JA 1H1VG 3L50A 4KEDA 3A5OS 1TMWA 4CBUG 1AK7A 4LIZA 2FH1A 2MOTA 4CBWG 3FG6A 5KYYB 5A1MA 1MDUA 5KYWB 4JD2H 1T3XA 3EGXA 3FFKA 1NMDG 1ESVS 2FH2A 4PKIG 1CFYA 1F7SA 4Z94G 2LLFA 4KEFA 2HD7A 1PCXA 1PD0A 3EGXB 1D4XG 2MP4A 1C0GS 1D0NA 5KYYA 2NUPB 5KYWA 1P8XA 5HVKD 3EG9A 3A5NS 1AHQA 4S10C 2NUTB 3DAWB 2D8BA 1V6FA 2FF3A 3TU5B 1SVQA 2KVKA 4BEX1 1KCQA 2NUPA 3EG9B 1J72A 5L6WC 3EH1A 1C0FS 2W0IA 1COFA 4CBXG 4KEEA 1NLVG 1PD1A 5KYXB 1NM1G 2VACA 1QPVA 1VFQA 2FH4A 2L72A 2VILA 2FGHA 2NUTA 2XFAA 5IVUA 5DD2A 1WFSA 5FAEA 4PKGG 4PKHB 3EFOB 3EGDB 1P8ZG 2VIKA 1T44G 2MV2A 1DEJS 1Q8XA 1M2VA 3FG7A 3A5LS 3EH2A 5FAFA 1M2OA 5HVKB 5KYUB 1JHWA 3FFNA 3CJBG 5KYXA 1Q8GA 1TVJA 3CI5G 1YAGG 3CJCG 3Q2BA 1WNJA 1M2VB 1T2LA 1X67A 1SVYA 1YVNG 2QTVA 3EFOA 3EGDA 1HQZ1 1AK6A 1WM4A 2LXXA 1UDMA 3A5MS 1RGIG 5KYUA 3DA7A 2FF6G 5KYNA 1CNUA 1VKKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T3Y A;  2FH3 A;  2I2Q A;  3CIP G;  2XF1 A;  2LJ8 A;  1EQY S;  1SVR A;  1NPH A;  1M4J A;  1H1V G;  3L50 A;  4KED A;  3A5O S;  1TMW A;  4CBU G;  1AK7 A;  4LIZ A;  2FH1 A;  2MOT A;  4CBW G;  3FG6 A;  5KYY B;  5A1M A;  1MDU A;  5KYW B;  4JD2 H;  1T3X A;  3EGX A;  3FFK A;  1NMD G;  1ESV S;  2FH2 A;  4PKI G;  1CFY A;  1F7S A;  4Z94 G;  2LLF A;  4KEF A;  2HD7 A;  1PCX A;  1PD0 A;  3EGX B;  1D4X G;  2MP4 A;  1C0G S;  1D0N A;  5KYY A;  2NUP B;  5KYW A;  1P8X A;  5HVK D;  3EG9 A;  3A5N S;  1AHQ A;  4S10 C;  2NUT B;  3DAW B;  2D8B A;  1V6F A;  2FF3 A;  3TU5 B;  1SVQ A;  2KVK A;  4BEX 1;  1KCQ A;  2NUP A;  3EG9 B;  1J72 A;  5L6W C;  3EH1 A;  1C0F S;  2W0I A;  1COF A;  4CBX G;  4KEE A;  1NLV G;  1PD1 A;  5KYX B;  1NM1 G;  2VAC A;  1QPV A;  1VFQ A;  2FH4 A;  2L72 A;  2VIL A;  2FGH A;  2NUT A;  2XFA A;  5IVU A;  5DD2 A;  1WFS A;  5FAE A;  4PKG G;  4PKH B;  3EFO B;  3EGD B;  1P8Z G;  2VIK A;  1T44 G;  2MV2 A;  1DEJ S;  1Q8X A;  1M2V A;  3FG7 A;  3A5L S;  3EH2 A;  5FAF A;  1M2O A;  5HVK B;  5KYU B;  1JHW A;  3FFN A;  3CJB G;  5KYX A;  1Q8G A;  1TVJ A;  3CI5 G;  1YAG G;  3CJC G;  3Q2B A;  1WNJ A;  1M2V B;  1T2L A;  1X67 A;  1SVY A;  1YVN G;  2QTV A;  3EFO A;  3EGD A;  1HQZ 1;  1AK6 A;  1WM4 A;  2LXX A;  1UDM A;  3A5M S;  1RGI G;  5KYU A;  2FF6 G;  5KYN A;  1CNU A;  1VKK A; 
#chains in the Genus database with same CATH topology
 1T3Y A;  2FH3 A;  2I2Q A;  3CIP G;  2XF1 A;  2LJ8 A;  1EQY S;  1SVR A;  1NPH A;  1M4J A;  1H1V G;  3L50 A;  4KED A;  3A5O S;  1TMW A;  4CBU G;  1AK7 A;  4LIZ A;  2FH1 A;  2MOT A;  4CBW G;  3FG6 A;  5KYY B;  5A1M A;  1MDU A;  5KYW B;  4JD2 H;  1T3X A;  3EGX A;  3FFK A;  1NMD G;  1ESV S;  2FH2 A;  4PKI G;  1CFY A;  1F7S A;  4Z94 G;  2LLF A;  4KEF A;  2HD7 A;  1PCX A;  1PD0 A;  3EGX B;  1D4X G;  2MP4 A;  1C0G S;  1D0N A;  5KYY A;  2NUP B;  5KYW A;  1P8X A;  5HVK D;  3EG9 A;  3A5N S;  1AHQ A;  4S10 C;  2NUT B;  3DAW B;  2D8B A;  1V6F A;  2FF3 A;  3TU5 B;  1SVQ A;  2KVK A;  4BEX 1;  1KCQ A;  2NUP A;  3EG9 B;  1J72 A;  5L6W C;  3EH1 A;  1C0F S;  2W0I A;  1COF A;  4CBX G;  4KEE A;  1NLV G;  1PD1 A;  5KYX B;  1NM1 G;  2VAC A;  1QPV A;  1VFQ A;  2FH4 A;  2L72 A;  2VIL A;  2FGH A;  2NUT A;  2XFA A;  5IVU A;  5DD2 A;  1WFS A;  5FAE A;  4PKG G;  4PKH B;  3EFO B;  3EGD B;  1P8Z G;  2VIK A;  1T44 G;  2MV2 A;  1DEJ S;  1Q8X A;  1M2V A;  3FG7 A;  3A5L S;  3EH2 A;  5FAF A;  1M2O A;  5HVK B;  5KYU B;  1JHW A;  3FFN A;  3CJB G;  5KYX A;  1Q8G A;  1TVJ A;  3CI5 G;  1YAG G;  3CJC G;  3Q2B A;  1WNJ A;  1M2V B;  1T2L A;  1X67 A;  1SVY A;  1YVN G;  2QTV A;  3EFO A;  3EGD A;  1HQZ 1;  1AK6 A;  1WM4 A;  2LXX A;  1UDM A;  3A5M S;  1RGI G;  5KYU A;  3DA7 A;  2FF6 G;  5KYN A;  1CNU A;  1VKK A; 
#chains in the Genus database with same CATH homology
 1T3Y A;  2FH3 A;  2I2Q A;  3CIP G;  2XF1 A;  2LJ8 A;  1EQY S;  1SVR A;  1NPH A;  1M4J A;  1H1V G;  3L50 A;  4KED A;  3A5O S;  1TMW A;  4CBU G;  1AK7 A;  4LIZ A;  2FH1 A;  2MOT A;  4CBW G;  3FG6 A;  5KYY B;  5A1M A;  1MDU A;  5KYW B;  4JD2 H;  1T3X A;  3EGX A;  3FFK A;  1NMD G;  1ESV S;  2FH2 A;  4PKI G;  1CFY A;  1F7S A;  4Z94 G;  2LLF A;  4KEF A;  2HD7 A;  1PCX A;  1PD0 A;  3EGX B;  1D4X G;  2MP4 A;  1C0G S;  1D0N A;  5KYY A;  2NUP B;  5KYW A;  1P8X A;  5HVK D;  3EG9 A;  3A5N S;  1AHQ A;  4S10 C;  2NUT B;  3DAW B;  2D8B A;  1V6F A;  2FF3 A;  3TU5 B;  1SVQ A;  2KVK A;  4BEX 1;  1KCQ A;  2NUP A;  3EG9 B;  1J72 A;  5L6W C;  3EH1 A;  1C0F S;  2W0I A;  1COF A;  4CBX G;  4KEE A;  1NLV G;  1PD1 A;  5KYX B;  1NM1 G;  2VAC A;  1QPV A;  1VFQ A;  2FH4 A;  2L72 A;  2VIL A;  2FGH A;  2NUT A;  2XFA A;  5IVU A;  5DD2 A;  1WFS A;  5FAE A;  4PKG G;  4PKH B;  3EFO B;  3EGD B;  1P8Z G;  2VIK A;  1T44 G;  2MV2 A;  1DEJ S;  1Q8X A;  1M2V A;  3FG7 A;  3A5L S;  3EH2 A;  5FAF A;  1M2O A;  5HVK B;  5KYU B;  1JHW A;  3FFN A;  3CJB G;  5KYX A;  1Q8G A;  1TVJ A;  3CI5 G;  1YAG G;  3CJC G;  3Q2B A;  1WNJ A;  1M2V B;  1T2L A;  1X67 A;  1SVY A;  1YVN G;  2QTV A;  3EFO A;  3EGD A;  1HQZ 1;  1AK6 A;  1WM4 A;  2LXX A;  1UDM A;  3A5M S;  1RGI G;  5KYU A;  3DA7 A;  2FF6 G;  5KYN A;  1CNU A;  1VKK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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