1X67 | Genus

Total Genus 21

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	21
sequence length	146
structure length	146
Chain Sequence	GSSGSSGMAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEEMVEELNSGKVMYAFCRVKDPNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHVTINARAEEDVEPECIMEKVASGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein binding
source organism	Homo sapiens
publication title	NMR solution structures of actin depolymerizing factor homology domains. pubmed doi rcsb
molecule keywords	Drebrin-like protein
total genus	21
structure length	146
sequence length	146
ec nomenclature
pdb deposition date	2005-05-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00241	Cofilin_ADF	Cofilin/tropomyosin-type actin-binding protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.20.10	Alpha Beta	3-Layer(aba) Sandwich	Severin	Severin	1x67A01

1PCXA 2FH1A 5KYUA 1D4XG 4Z94G 1CFYA 3FFKA 5HVKB 2XFAA 2FGHA 2FH4A 1AK6A 3EG9B 4PKHB 1J72A 1TVJA 1WNJA 4PKGG 1M4JA 1AHQA 1YAGG 4PKIG 3EGDB 5KYWB 2MP4A 2NUTA 2MV2A 1P8XA 5DD2A 2MOTA 1M2VA 5KYNA 1NLVG 2VIKA 5KYYA 2D8BA 3CJCG 1T44G 1MDUA 1Q8GA 3EFOB 5HVKD 1WM4A 2VACA 3EG9A 1C0FS 2FH2A 1Q8XA 1NM1G 2L72A 2XF1A 1EQYS 1SVQA 3EGDA 1H1VG 5KYWA 2I2QA 3EGXB 3FG6A 4BEX1 2NUPB 4KEFA 5FAFA 5FAEA 5KYXB 1TMWA 1HQZ1 1D0NA 1JHWA 1VKKA 3CI5G 3L50A 1KCQA 1SVYA 1P8ZG 2W0IA 3EFOA 1PD1A 1AK7A 2KVKA 1UDMA 4KEDA 5A1MA 3EH1A 2QTVA 1T3YA 5IVUA 1CNUA 3DAWB 1PD0A 1VFQA 3FFNA 4KEEA 1SVRA 5KYYB 1COFA 1V6FA 2VILA 5KYUB 4CBWG 3A5MS 3EGXA 4CBUG 1QPVA 4S10C 1X67A 2NUPA 4CBXG 1WFSA 2FH3A 3EH2A 1F7SA 2FF3A 5KYXA 3A5NS 1M2OA 1DEJS 3A5LS 4JD2H 1T2LA 3FG7A 3CJBG 2LLFA 1NPHA 5L6WC 2LXXA 1T3XA 3Q2BA 4LIZA 1NMDG 2NUTB 1C0GS 2HD7A 2LJ8A 1RGIG 3TU5B 1M2VB 2FF6G 3CIPG 1YVNG 3A5OS 1ESVS
chains in the Genus database with same CATH superfamily

1PCXA 2FH1A 5KYUA 1D4XG 4Z94G 1CFYA 3FFKA 5HVKB 2XFAA 2FGHA 2FH4A 1AK6A 3EG9B 4PKHB 1J72A 1TVJA 1WNJA 4PKGG 1M4JA 1AHQA 1YAGG 4PKIG 3EGDB 5KYWB 2MP4A 2NUTA 2MV2A 1P8XA 5DD2A 2MOTA 1M2VA 5KYNA 1NLVG 2VIKA 5KYYA 2D8BA 3CJCG 1T44G 1MDUA 1Q8GA 3EFOB 5HVKD 1WM4A 2VACA 3EG9A 1C0FS 2FH2A 1Q8XA 1NM1G 2L72A 2XF1A 1EQYS 1SVQA 3EGDA 1H1VG 5KYWA 2I2QA 3EGXB 3FG6A 4BEX1 2NUPB 4KEFA 5FAFA 5FAEA 5KYXB 1TMWA 1HQZ1 1D0NA 1JHWA 1VKKA 3CI5G 3L50A 1KCQA 1SVYA 1P8ZG 2W0IA 3EFOA 1PD1A 1AK7A 2KVKA 1UDMA 4KEDA 3DA7A 5A1MA 3EH1A 2QTVA 1T3YA 5IVUA 1CNUA 3DAWB 1PD0A 1VFQA 3FFNA 4KEEA 1SVRA 5KYYB 1COFA 1V6FA 2VILA 5KYUB 4CBWG 3A5MS 3EGXA 4CBUG 1QPVA 4S10C 1X67A 2NUPA 4CBXG 1WFSA 2FH3A 3EH2A 1F7SA 2FF3A 5KYXA 3A5NS 1M2OA 1DEJS 3A5LS 4JD2H 1T2LA 3FG7A 3CJBG 2LLFA 1NPHA 5L6WC 2LXXA 1T3XA 3Q2BA 4LIZA 1NMDG 2NUTB 1C0GS 2HD7A 2LJ8A 1RGIG 3TU5B 1M2VB 2FF6G 3CIPG 1YVNG 3A5OS 1ESVS
chains in the Genus database with same CATH topology

1PCXA 2FH1A 5KYUA 1D4XG 4Z94G 1CFYA 3FFKA 5HVKB 2XFAA 2FGHA 2FH4A 1AK6A 3EG9B 4PKHB 1J72A 1TVJA 1WNJA 4PKGG 1M4JA 1AHQA 1YAGG 4PKIG 3EGDB 5KYWB 2MP4A 2NUTA 2MV2A 1P8XA 5DD2A 2MOTA 1M2VA 5KYNA 1NLVG 2VIKA 5KYYA 2D8BA 3CJCG 1T44G 1MDUA 1Q8GA 3EFOB 5HVKD 1WM4A 2VACA 3EG9A 1C0FS 2FH2A 1Q8XA 1NM1G 2L72A 2XF1A 1EQYS 1SVQA 3EGDA 1H1VG 5KYWA 2I2QA 3EGXB 3FG6A 4BEX1 2NUPB 4KEFA 5FAFA 5FAEA 5KYXB 1TMWA 1HQZ1 1D0NA 1JHWA 1VKKA 3CI5G 3L50A 1KCQA 1SVYA 1P8ZG 2W0IA 3EFOA 1PD1A 1AK7A 2KVKA 1UDMA 4KEDA 3DA7A 5A1MA 3EH1A 2QTVA 1T3YA 5IVUA 1CNUA 3DAWB 1PD0A 1VFQA 3FFNA 4KEEA 1SVRA 5KYYB 1COFA 1V6FA 2VILA 5KYUB 4CBWG 3A5MS 3EGXA 4CBUG 1QPVA 4S10C 1X67A 2NUPA 4CBXG 1WFSA 2FH3A 3EH2A 1F7SA 2FF3A 5KYXA 3A5NS 1M2OA 1DEJS 3A5LS 4JD2H 1T2LA 3FG7A 3CJBG 2LLFA 1NPHA 5L6WC 2LXXA 1T3XA 3Q2BA 4LIZA 1NMDG 2NUTB 1C0GS 2HD7A 2LJ8A 1RGIG 3TU5B 1M2VB 2FF6G 3CIPG 1YVNG 3A5OS 1ESVS
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1PCX A;  2FH1 A;  5KYU A;  1D4X G;  4Z94 G;  1CFY A;  3FFK A;  5HVK B;  2XFA A;  2FGH A;  2FH4 A;  1AK6 A;  3EG9 B;  4PKH B;  1J72 A;  1TVJ A;  1WNJ A;  4PKG G;  1M4J A;  1AHQ A;  1YAG G;  4PKI G;  3EGD B;  5KYW B;  2MP4 A;  2NUT A;  2MV2 A;  1P8X A;  5DD2 A;  2MOT A;  1M2V A;  5KYN A;  1NLV G;  2VIK A;  5KYY A;  2D8B A;  3CJC G;  1T44 G;  1MDU A;  1Q8G A;  3EFO B;  5HVK D;  1WM4 A;  2VAC A;  3EG9 A;  1C0F S;  2FH2 A;  1Q8X A;  1NM1 G;  2L72 A;  2XF1 A;  1EQY S;  1SVQ A;  3EGD A;  1H1V G;  5KYW A;  2I2Q A;  3EGX B;  3FG6 A;  4BEX 1;  2NUP B;  4KEF A;  5FAF A;  5FAE A;  5KYX B;  1TMW A;  1HQZ 1;  1D0N A;  1JHW A;  1VKK A;  3CI5 G;  3L50 A;  1KCQ A;  1SVY A;  1P8Z G;  2W0I A;  3EFO A;  1PD1 A;  1AK7 A;  2KVK A;  1UDM A;  4KED A;  5A1M A;  3EH1 A;  2QTV A;  1T3Y A;  5IVU A;  1CNU A;  3DAW B;  1PD0 A;  1VFQ A;  3FFN A;  4KEE A;  1SVR A;  5KYY B;  1COF A;  1V6F A;  2VIL A;  5KYU B;  4CBW G;  3A5M S;  3EGX A;  4CBU G;  1QPV A;  4S10 C;  1X67 A;  2NUP A;  4CBX G;  1WFS A;  2FH3 A;  3EH2 A;  1F7S A;  2FF3 A;  5KYX A;  3A5N S;  1M2O A;  1DEJ S;  3A5L S;  4JD2 H;  1T2L A;  3FG7 A;  3CJB G;  2LLF A;  1NPH A;  5L6W C;  2LXX A;  1T3X A;  3Q2B A;  4LIZ A;  1NMD G;  2NUT B;  1C0G S;  2HD7 A;  2LJ8 A;  1RGI G;  3TU5 B;  1M2V B;  2FF6 G;  3CIP G;  1YVN G;  3A5O S;  1ESV S; 
#chains in the Genus database with same CATH topology
 1PCX A;  2FH1 A;  5KYU A;  1D4X G;  4Z94 G;  1CFY A;  3FFK A;  5HVK B;  2XFA A;  2FGH A;  2FH4 A;  1AK6 A;  3EG9 B;  4PKH B;  1J72 A;  1TVJ A;  1WNJ A;  4PKG G;  1M4J A;  1AHQ A;  1YAG G;  4PKI G;  3EGD B;  5KYW B;  2MP4 A;  2NUT A;  2MV2 A;  1P8X A;  5DD2 A;  2MOT A;  1M2V A;  5KYN A;  1NLV G;  2VIK A;  5KYY A;  2D8B A;  3CJC G;  1T44 G;  1MDU A;  1Q8G A;  3EFO B;  5HVK D;  1WM4 A;  2VAC A;  3EG9 A;  1C0F S;  2FH2 A;  1Q8X A;  1NM1 G;  2L72 A;  2XF1 A;  1EQY S;  1SVQ A;  3EGD A;  1H1V G;  5KYW A;  2I2Q A;  3EGX B;  3FG6 A;  4BEX 1;  2NUP B;  4KEF A;  5FAF A;  5FAE A;  5KYX B;  1TMW A;  1HQZ 1;  1D0N A;  1JHW A;  1VKK A;  3CI5 G;  3L50 A;  1KCQ A;  1SVY A;  1P8Z G;  2W0I A;  3EFO A;  1PD1 A;  1AK7 A;  2KVK A;  1UDM A;  4KED A;  3DA7 A;  5A1M A;  3EH1 A;  2QTV A;  1T3Y A;  5IVU A;  1CNU A;  3DAW B;  1PD0 A;  1VFQ A;  3FFN A;  4KEE A;  1SVR A;  5KYY B;  1COF A;  1V6F A;  2VIL A;  5KYU B;  4CBW G;  3A5M S;  3EGX A;  4CBU G;  1QPV A;  4S10 C;  1X67 A;  2NUP A;  4CBX G;  1WFS A;  2FH3 A;  3EH2 A;  1F7S A;  2FF3 A;  5KYX A;  3A5N S;  1M2O A;  1DEJ S;  3A5L S;  4JD2 H;  1T2L A;  3FG7 A;  3CJB G;  2LLF A;  1NPH A;  5L6W C;  2LXX A;  1T3X A;  3Q2B A;  4LIZ A;  1NMD G;  2NUT B;  1C0G S;  2HD7 A;  2LJ8 A;  1RGI G;  3TU5 B;  1M2V B;  2FF6 G;  3CIP G;  1YVN G;  3A5O S;  1ESV S; 
#chains in the Genus database with same CATH homology
 1PCX A;  2FH1 A;  5KYU A;  1D4X G;  4Z94 G;  1CFY A;  3FFK A;  5HVK B;  2XFA A;  2FGH A;  2FH4 A;  1AK6 A;  3EG9 B;  4PKH B;  1J72 A;  1TVJ A;  1WNJ A;  4PKG G;  1M4J A;  1AHQ A;  1YAG G;  4PKI G;  3EGD B;  5KYW B;  2MP4 A;  2NUT A;  2MV2 A;  1P8X A;  5DD2 A;  2MOT A;  1M2V A;  5KYN A;  1NLV G;  2VIK A;  5KYY A;  2D8B A;  3CJC G;  1T44 G;  1MDU A;  1Q8G A;  3EFO B;  5HVK D;  1WM4 A;  2VAC A;  3EG9 A;  1C0F S;  2FH2 A;  1Q8X A;  1NM1 G;  2L72 A;  2XF1 A;  1EQY S;  1SVQ A;  3EGD A;  1H1V G;  5KYW A;  2I2Q A;  3EGX B;  3FG6 A;  4BEX 1;  2NUP B;  4KEF A;  5FAF A;  5FAE A;  5KYX B;  1TMW A;  1HQZ 1;  1D0N A;  1JHW A;  1VKK A;  3CI5 G;  3L50 A;  1KCQ A;  1SVY A;  1P8Z G;  2W0I A;  3EFO A;  1PD1 A;  1AK7 A;  2KVK A;  1UDM A;  4KED A;  3DA7 A;  5A1M A;  3EH1 A;  2QTV A;  1T3Y A;  5IVU A;  1CNU A;  3DAW B;  1PD0 A;  1VFQ A;  3FFN A;  4KEE A;  1SVR A;  5KYY B;  1COF A;  1V6F A;  2VIL A;  5KYU B;  4CBW G;  3A5M S;  3EGX A;  4CBU G;  1QPV A;  4S10 C;  1X67 A;  2NUP A;  4CBX G;  1WFS A;  2FH3 A;  3EH2 A;  1F7S A;  2FF3 A;  5KYX A;  3A5N S;  1M2O A;  1DEJ S;  3A5L S;  4JD2 H;  1T2L A;  3FG7 A;  3CJB G;  2LLF A;  1NPH A;  5L6W C;  2LXX A;  1T3X A;  3Q2B A;  4LIZ A;  1NMD G;  2NUT B;  1C0G S;  2HD7 A;  2LJ8 A;  1RGI G;  3TU5 B;  1M2V B;  2FF6 G;  3CIP G;  1YVN G;  3A5O S;  1ESV S;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1X67A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations