2FGHA

Atp bound gelsolin
Total Genus 210
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
210
sequence length
729
structure length
721
Chain Sequence
VEHPEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFERLKATQVSKGIRDNERSGRAQVSVFEEGAEPEAMLQVLGPKPTLPEATENRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEERKAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFFKNWRDPDQTEGLGLAYLSSHIAHVERVPFDAATLHTSTAMAAQHGMDDDGTGQKQIWRVEGSNKVPVDPATYGQFYGGDSYIILYNYRHGSRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIVYKGGTSREGGQTAPASTRLFQVRASSSGATRAVEIIPKAGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGAQELLRVLRAQPVQVAEGSEPDSFWEALGGKATYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQDEEKTEALTSAKRYIDTDPAHRDRRTPITVVKQGFEPPSFVGWFLGWDDSYWSVDPLDRALAELAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The structure of gelsolin bound to ATP
pubmed doi rcsb
molecule keywords gelsolin
molecule tags Contractile protein, structural protein
total genus 210
structure length 721
sequence length 729
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-12-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 2fghA02
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 2fghA01
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 2fghA04
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 2fghA06
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 2fghA05
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 2fghA03
1UDMA 3CI5G 2HD7A 2LLFA 2NUTA 1PD0A 3EGXA 1WNJA 5KYXA 3FFNA 1P8XA 1M2VB 1D0NA 5IVUA 2VIKA 4CBXG 2I2QA 5L6WC 1COFA 2VILA 4PKIG 3A5OS 4LIZA 2MOTA 3EH1A 1AK6A 2XF1A 5KYUB 5DD2A 5FAFA 1WFSA 1QPVA 5KYXB 1MDUA 1NM1G 4PKHB 1NLVG 1SVRA 3EH2A 1AHQA 4PKGG 1AK7A 3A5MS 2KVKA 1D4XG 1P8ZG 1EQYS 1CNUA 3FFKA 3EG9A 5KYYA 1VKKA 2L72A 1M2OA 3A5NS 1JHWA 5KYWA 2NUPA 3EFOB 3EGDA 3Q2BA 3FG6A 1TVJA 1ESVS 3CIPG 2VACA 2FH3A 1DEJS 1HQZ1 2NUTB 1T2LA 3A5LS 5A1MA 3EGXB 1SVQA 1M4JA 3CJBG 1NMDG 1T3YA 5KYNA 3EGDB 1TMWA 2FH2A 1YVNG 1PD1A 2W0IA 4CBWG 1J72A 2QTVA 3DAWB 3FG7A 2MP4A 1Q8XA 2LJ8A 4Z94G 3TU5B 2FF6G 4CBUG 4BEX1 2FH4A 1C0FS 2FH1A 3CJCG 5HVKD 1NPHA 1YAGG 2XFAA 5HVKB 3EG9B 5KYUA 5KYYB 4S10C 5KYWB 1T44G 2NUPB 4KEEA 1X67A 4KEFA 1PCXA 5FAEA 1VFQA 1C0GS 2FGHA 2MV2A 1F7SA 1KCQA 2LXXA 4JD2H 2FF3A 1T3XA 1H1VG 4KEDA 1SVYA 1V6FA 3L50A 1M2VA 2D8BA 1WM4A 1CFYA 1Q8GA 1RGIG 3EFOA
chains in the Genus database with same CATH superfamily
1UDMA 3CI5G 2HD7A 2LLFA 2NUTA 1PD0A 3EGXA 1WNJA 5KYXA 3FFNA 1P8XA 1M2VB 1D0NA 5IVUA 2VIKA 4CBXG 2I2QA 5L6WC 1COFA 2VILA 4PKIG 3A5OS 4LIZA 2MOTA 3EH1A 1AK6A 2XF1A 5KYUB 5DD2A 5FAFA 1WFSA 1QPVA 5KYXB 1MDUA 1NM1G 4PKHB 1NLVG 1SVRA 3DA7A 1AHQA 3EH2A 4PKGG 1AK7A 3A5MS 2KVKA 1D4XG 1P8ZG 1EQYS 1CNUA 3FFKA 3EG9A 5KYYA 1VKKA 2L72A 1M2OA 3A5NS 1JHWA 5KYWA 2NUPA 3EFOB 3EGDA 3Q2BA 3FG6A 1TVJA 1ESVS 3CIPG 2VACA 2FH3A 1DEJS 1HQZ1 2NUTB 1T2LA 3A5LS 5A1MA 3EGXB 1SVQA 1M4JA 3CJBG 1NMDG 1T3YA 5KYNA 3EGDB 1TMWA 2FH2A 1YVNG 1PD1A 2W0IA 4CBWG 1J72A 2QTVA 3DAWB 3FG7A 2MP4A 1Q8XA 2LJ8A 4Z94G 3TU5B 2FF6G 4CBUG 4BEX1 2FH4A 1C0FS 2FH1A 3CJCG 5HVKD 1NPHA 1YAGG 2XFAA 5HVKB 3EG9B 5KYUA 5KYYB 4S10C 5KYWB 1T44G 2NUPB 4KEEA 1X67A 4KEFA 1PCXA 5FAEA 1VFQA 1C0GS 2FGHA 2MV2A 1F7SA 1KCQA 2LXXA 4JD2H 2FF3A 1T3XA 1H1VG 4KEDA 1SVYA 1V6FA 3L50A 1M2VA 2D8BA 1WM4A 1CFYA 1Q8GA 1RGIG 3EFOA
chains in the Genus database with same CATH topology
1UDMA 3CI5G 2HD7A 2LLFA 2NUTA 1PD0A 3EGXA 1WNJA 5KYXA 3FFNA 1P8XA 1M2VB 1D0NA 5IVUA 2VIKA 4CBXG 2I2QA 5L6WC 1COFA 2VILA 4PKIG 3A5OS 4LIZA 2MOTA 3EH1A 1AK6A 2XF1A 5KYUB 5DD2A 5FAFA 1WFSA 1QPVA 5KYXB 1MDUA 1NM1G 4PKHB 1NLVG 1SVRA 3DA7A 1AHQA 3EH2A 4PKGG 1AK7A 3A5MS 2KVKA 1D4XG 1P8ZG 1EQYS 1CNUA 3FFKA 3EG9A 5KYYA 1VKKA 2L72A 1M2OA 3A5NS 1JHWA 5KYWA 2NUPA 3EFOB 3EGDA 3Q2BA 3FG6A 1TVJA 1ESVS 3CIPG 2VACA 2FH3A 1DEJS 1HQZ1 2NUTB 1T2LA 3A5LS 5A1MA 3EGXB 1SVQA 1M4JA 3CJBG 1NMDG 1T3YA 5KYNA 3EGDB 1TMWA 2FH2A 1YVNG 1PD1A 2W0IA 4CBWG 1J72A 2QTVA 3DAWB 3FG7A 2MP4A 1Q8XA 2LJ8A 4Z94G 3TU5B 2FF6G 4CBUG 4BEX1 2FH4A 1C0FS 2FH1A 3CJCG 5HVKD 1NPHA 1YAGG 2XFAA 5HVKB 3EG9B 5KYUA 5KYYB 4S10C 5KYWB 1T44G 2NUPB 4KEEA 1X67A 4KEFA 1PCXA 5FAEA 1VFQA 1C0GS 2FGHA 2MV2A 1F7SA 1KCQA 2LXXA 4JD2H 2FF3A 1T3XA 1H1VG 4KEDA 1SVYA 1V6FA 3L50A 1M2VA 2D8BA 1WM4A 1CFYA 1Q8GA 1RGIG 3EFOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UDM A;  3CI5 G;  2HD7 A;  2LLF A;  2NUT A;  1PD0 A;  3EGX A;  1WNJ A;  5KYX A;  3FFN A;  1P8X A;  1M2V B;  1D0N A;  5IVU A;  2VIK A;  4CBX G;  2I2Q A;  5L6W C;  1COF A;  2VIL A;  4PKI G;  3A5O S;  4LIZ A;  2MOT A;  3EH1 A;  1AK6 A;  2XF1 A;  5KYU B;  5DD2 A;  5FAF A;  1WFS A;  1QPV A;  5KYX B;  1MDU A;  1NM1 G;  4PKH B;  1NLV G;  1SVR A;  3EH2 A;  1AHQ A;  4PKG G;  1AK7 A;  3A5M S;  2KVK A;  1D4X G;  1P8Z G;  1EQY S;  1CNU A;  3FFK A;  3EG9 A;  5KYY A;  1VKK A;  2L72 A;  1M2O A;  3A5N S;  1JHW A;  5KYW A;  2NUP A;  3EFO B;  3EGD A;  3Q2B A;  3FG6 A;  1TVJ A;  1ESV S;  3CIP G;  2VAC A;  2FH3 A;  1DEJ S;  1HQZ 1;  2NUT B;  1T2L A;  3A5L S;  5A1M A;  3EGX B;  1SVQ A;  1M4J A;  3CJB G;  1NMD G;  1T3Y A;  5KYN A;  3EGD B;  1TMW A;  2FH2 A;  1YVN G;  1PD1 A;  2W0I A;  4CBW G;  1J72 A;  2QTV A;  3DAW B;  3FG7 A;  2MP4 A;  1Q8X A;  2LJ8 A;  4Z94 G;  3TU5 B;  2FF6 G;  4CBU G;  4BEX 1;  2FH4 A;  1C0F S;  2FH1 A;  3CJC G;  5HVK D;  1NPH A;  1YAG G;  2XFA A;  5HVK B;  3EG9 B;  5KYU A;  5KYY B;  4S10 C;  5KYW B;  1T44 G;  2NUP B;  4KEE A;  1X67 A;  4KEF A;  1PCX A;  5FAE A;  1VFQ A;  1C0G S;  2FGH A;  2MV2 A;  1F7S A;  1KCQ A;  2LXX A;  4JD2 H;  2FF3 A;  1T3X A;  1H1V G;  4KED A;  1SVY A;  1V6F A;  3L50 A;  1M2V A;  2D8B A;  1WM4 A;  1CFY A;  1Q8G A;  1RGI G;  3EFO A; 
#chains in the Genus database with same CATH topology
 1UDM A;  3CI5 G;  2HD7 A;  2LLF A;  2NUT A;  1PD0 A;  3EGX A;  1WNJ A;  5KYX A;  3FFN A;  1P8X A;  1M2V B;  1D0N A;  5IVU A;  2VIK A;  4CBX G;  2I2Q A;  5L6W C;  1COF A;  2VIL A;  4PKI G;  3A5O S;  4LIZ A;  2MOT A;  3EH1 A;  1AK6 A;  2XF1 A;  5KYU B;  5DD2 A;  5FAF A;  1WFS A;  1QPV A;  5KYX B;  1MDU A;  1NM1 G;  4PKH B;  1NLV G;  1SVR A;  3DA7 A;  1AHQ A;  3EH2 A;  4PKG G;  1AK7 A;  3A5M S;  2KVK A;  1D4X G;  1P8Z G;  1EQY S;  1CNU A;  3FFK A;  3EG9 A;  5KYY A;  1VKK A;  2L72 A;  1M2O A;  3A5N S;  1JHW A;  5KYW A;  2NUP A;  3EFO B;  3EGD A;  3Q2B A;  3FG6 A;  1TVJ A;  1ESV S;  3CIP G;  2VAC A;  2FH3 A;  1DEJ S;  1HQZ 1;  2NUT B;  1T2L A;  3A5L S;  5A1M A;  3EGX B;  1SVQ A;  1M4J A;  3CJB G;  1NMD G;  1T3Y A;  5KYN A;  3EGD B;  1TMW A;  2FH2 A;  1YVN G;  1PD1 A;  2W0I A;  4CBW G;  1J72 A;  2QTV A;  3DAW B;  3FG7 A;  2MP4 A;  1Q8X A;  2LJ8 A;  4Z94 G;  3TU5 B;  2FF6 G;  4CBU G;  4BEX 1;  2FH4 A;  1C0F S;  2FH1 A;  3CJC G;  5HVK D;  1NPH A;  1YAG G;  2XFA A;  5HVK B;  3EG9 B;  5KYU A;  5KYY B;  4S10 C;  5KYW B;  1T44 G;  2NUP B;  4KEE A;  1X67 A;  4KEF A;  1PCX A;  5FAE A;  1VFQ A;  1C0G S;  2FGH A;  2MV2 A;  1F7S A;  1KCQ A;  2LXX A;  4JD2 H;  2FF3 A;  1T3X A;  1H1V G;  4KED A;  1SVY A;  1V6F A;  3L50 A;  1M2V A;  2D8B A;  1WM4 A;  1CFY A;  1Q8G A;  1RGI G;  3EFO A; 
#chains in the Genus database with same CATH homology
 1UDM A;  3CI5 G;  2HD7 A;  2LLF A;  2NUT A;  1PD0 A;  3EGX A;  1WNJ A;  5KYX A;  3FFN A;  1P8X A;  1M2V B;  1D0N A;  5IVU A;  2VIK A;  4CBX G;  2I2Q A;  5L6W C;  1COF A;  2VIL A;  4PKI G;  3A5O S;  4LIZ A;  2MOT A;  3EH1 A;  1AK6 A;  2XF1 A;  5KYU B;  5DD2 A;  5FAF A;  1WFS A;  1QPV A;  5KYX B;  1MDU A;  1NM1 G;  4PKH B;  1NLV G;  1SVR A;  3DA7 A;  1AHQ A;  3EH2 A;  4PKG G;  1AK7 A;  3A5M S;  2KVK A;  1D4X G;  1P8Z G;  1EQY S;  1CNU A;  3FFK A;  3EG9 A;  5KYY A;  1VKK A;  2L72 A;  1M2O A;  3A5N S;  1JHW A;  5KYW A;  2NUP A;  3EFO B;  3EGD A;  3Q2B A;  3FG6 A;  1TVJ A;  1ESV S;  3CIP G;  2VAC A;  2FH3 A;  1DEJ S;  1HQZ 1;  2NUT B;  1T2L A;  3A5L S;  5A1M A;  3EGX B;  1SVQ A;  1M4J A;  3CJB G;  1NMD G;  1T3Y A;  5KYN A;  3EGD B;  1TMW A;  2FH2 A;  1YVN G;  1PD1 A;  2W0I A;  4CBW G;  1J72 A;  2QTV A;  3DAW B;  3FG7 A;  2MP4 A;  1Q8X A;  2LJ8 A;  4Z94 G;  3TU5 B;  2FF6 G;  4CBU G;  4BEX 1;  2FH4 A;  1C0F S;  2FH1 A;  3CJC G;  5HVK D;  1NPH A;  1YAG G;  2XFA A;  5HVK B;  3EG9 B;  5KYU A;  5KYY B;  4S10 C;  5KYW B;  1T44 G;  2NUP B;  4KEE A;  1X67 A;  4KEF A;  1PCX A;  5FAE A;  1VFQ A;  1C0G S;  2FGH A;  2MV2 A;  1F7S A;  1KCQ A;  2LXX A;  4JD2 H;  2FF3 A;  1T3X A;  1H1V G;  4KED A;  1SVY A;  1V6F A;  3L50 A;  1M2V A;  2D8B A;  1WM4 A;  1CFY A;  1Q8G A;  1RGI G;  3EFO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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