2OGFA

Crystal structure of protein mj0408 from methanococcus jannaschii, pfam duf372
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
121
structure length
121
Chain Sequence
SLRVEETEVFKKYFKNLTDRERAVFEGGITLGALFHQFVGTPVSKYNKESLERAIEEAMKNQPCVYDIKVKIRNVGEKYVSLDGKMLDVDLKIKINKTVAHLKLEYIPEIDYPLMYVKKFE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of hypothetical protein MJ0408 from Methanococcus jannaschii
rcsb
molecule tags Structural genomics, unknown function
source organism Methanocaldococcus jannaschii
molecule keywords Hypothetical protein MJ0408
total genus 34
structure length 121
sequence length 121
chains with identical sequence B, C, D
ec nomenclature ec 4.1.2.25: Dihydroneopterin aldolase.
pdb deposition date 2007-01-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04038 DHNA Dihydroneopterin aldolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1300.20 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 7,8-dihydroneopterin aldolase (MptD) 2ogfA00
2OGFA 2IECA 2I52A
chains in the Genus database with same CATH superfamily
3HL6A 1UFVA 3CFHL 2G2SA 3ISJA 3IOEA 2X3FA 4G5YA 3Q10A 3IUEA 2A50A 2G5ZA 2GR8A 4MQ6A 3COYA 2GR7A 5KWVA 2A52A 3QTTA 1N2HA 2A53A 2A86A 3CFIA 3COVA 3UA0A 2I52A 2A54A 4MULA 5G2FA 3IVXA 2A84A 1MOPA 1N2GA 2OGFA 3CFFL 4DDMA 2G3DA 4G5FA 5BW0B 2RETA 4MUKA 4MUNA 2A7XA 2A56A 4MUHA 2G16A 3CI0I 3COZA 3LF4A 3IOCA 4DDKA 1N2IA 3MUEA 4DE5A 4BHRA 3IODA 5HG0A 4EFKA 4MUJA 3INNA 3AG6A 2LMEA 1V8FA 3UK2A 2A88A 3EMOA 1N2JA 3CI0K 4MUEA 3IMCA 3IVGA 3IUBA 3CFAL 3Q12A 4IXJA 1IHOA 1N2BA 4MUFA 4MUGA 3MXTA 4MUIA 3N8HA 3LE8A 4FZJA 2EJCA 3IMGA 2IECA 4DDHA 1N2EA 5EXCA 3AG5A 4EF6A 3UY4A 3IMEA 2GW4A 3IOBA 1N2OA 3IVCA 3COWA
chains in the Genus database with same CATH topology
2OGFA 2IECA 2I52A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OGF A;  2IEC A;  2I52 A; 
#chains in the Genus database with same CATH topology
 3HL6 A;  1UFV A;  3CFH L;  2G2S A;  3ISJ A;  3IOE A;  2X3F A;  4G5Y A;  3Q10 A;  3IUE A;  2A50 A;  2G5Z A;  2GR8 A;  4MQ6 A;  3COY A;  2GR7 A;  5KWV A;  2A52 A;  3QTT A;  1N2H A;  2A53 A;  2A86 A;  3CFI A;  3COV A;  3UA0 A;  2I52 A;  2A54 A;  4MUL A;  5G2F A;  3IVX A;  2A84 A;  1MOP A;  1N2G A;  2OGF A;  3CFF L;  4DDM A;  2G3D A;  4G5F A;  5BW0 B;  2RET A;  4MUK A;  4MUN A;  2A7X A;  2A56 A;  4MUH A;  2G16 A;  3CI0 I;  3COZ A;  3LF4 A;  3IOC A;  4DDK A;  1N2I A;  3MUE A;  4DE5 A;  4BHR A;  3IOD A;  5HG0 A;  4EFK A;  4MUJ A;  3INN A;  3AG6 A;  2LME A;  1V8F A;  3UK2 A;  2A88 A;  3EMO A;  1N2J A;  3CI0 K;  4MUE A;  3IMC A;  3IVG A;  3IUB A;  3CFA L;  3Q12 A;  4IXJ A;  1IHO A;  1N2B A;  4MUF A;  4MUG A;  3MXT A;  4MUI A;  3N8H A;  3LE8 A;  4FZJ A;  2EJC A;  3IMG A;  2IEC A;  4DDH A;  1N2E A;  5EXC A;  3AG5 A;  4EF6 A;  3UY4 A;  3IME A;  2GW4 A;  3IOB A;  1N2O A;  3IVC A;  3COW A; 
#chains in the Genus database with same CATH homology
 2OGF A;  2IEC A;  2I52 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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