3CI0K

The crystal structure of the gspk-gspi-gspj complex from enterotoxigenic escherichia coli type 2 secretion system
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
287
structure length
280
Chain Sequence
GRTRSQQEYQQALWYSASAESLALSALSLSLKNEKRVHLEQPWASGPRFFPLPQGQIAVTLRDAQACFNLNALAQPTTASRPLAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRLGREDSEYLARSVPFYAANQPLADISEMRVVQGMDAGLYQKLKPLVCALPMTRQQININTLDVTQSVILEALFDARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQLKTVLSVDSNYFWLRSDITVNEIELTMNSLIVRMGPQHFSVLWHQTGES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Pseudopilin GspI
publication title Structure of the GspK-GspI-GspJ complex from the enterotoxigenic Escherichia coli type 2 secretion system.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Protein transport
total genus 83
structure length 280
sequence length 287
ec nomenclature
pdb deposition date 2008-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF03934 T2SSK Type II secretion system (T2SS), protein K
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.60 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 EpsJ-like 3ci0K02
1.10.40.60 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 EpsJ-like 3ci0K03
3.30.1300.30 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 GSPII I/J protein-like 3ci0K01
3CI0I 2LMEA 2GR7A 3CFIA 2RETA 2GR8A 3EMOA 5BW0B 3CI0K
chains in the Genus database with same CATH superfamily
4NSLA 3UA0A 3CFFL 3LF4A 3Q12A 2E9FA 4MUFA 2JAUA 4MUMA 3CI0I 4HGVA 1V8FA 4G5FA 4DDMA 4MWOA 1C3CA 2FUSA 3IOEA 1HY1A 2QGAB 5G2FA 2A88A 1YFMA 2GW4A 2LMEA 3E04A 4MUNA 2IECA 2JAOA 3RRPA 1IHOA 4MUGA 5F91A 2A7XA 1J3UA 2JAWA 1DCNA 5D6BA 4APBA 3IUBA 3AG6A 1FUOA 1Z4PX 4MULA 1JSWA 3QBPA 3R6VA 4MUIA 3HL6A 1U16A 3CFIA 1U15A 5KWVA 1Z4QA 4L6AA 1HY0A 3IUEA 2PFMA 2GR7A 1FUPA 3IVCA 1Z4MA 3U13A 3INNA 3RD8A 1AUWA 4L6CA 2YV5A 2RCNA 2GR8A 1Z4JA 2RETA 1N2HA 2I52A 1TJWA 1Z4LA 1FUQA 1DOFA 1MOPA 2G2SA 1RE5A 1I0AA 3N8HA 1Q91A 3COWA 1N2OA 4MUKA 1IW7D 4YIHA 3BHGA 4MX2A 3CI0K 3COZA 3F4TA 5HG0A 3MUEA 3UK2A 2X75A 2I7DA 2OGFA 4EFCA 3AG5A 3IOBA 5BW0B 1Z4IA 2JARA 1UFVA 3IVGA 4IXJA 3IMCA 3BWVA 2A50A 4ADMA 5EXCA 2A53A 2G16A 3COYA 4MUEA 1T9HA 1N2EA 2A54A 4BHRA 4ADLA 1Q92A 1FURA 2A56A 2PTSA 3COVA 3QTTA 4DDHA 3OCEA 3IOCA 1N2BA 1Z4KA 1Q5NA 3C8TA 3F4RA 4DDKA 2A52A 3IMEA 1TJUA 4L57A 2G5ZA 2A86A 1MH9A 4MUJA 1K62A 3CFHL 4NFLA 4G5YA 1N2IA 1TJ7A 3TV2A 1N2GA 3Q10A 3IVXA 4MUHA 3CFAL 3R6QA 4IQJM 1C3UA 1K7WA 1VDKA 3U19A 1XWOA 2PTRA 5HW2A 4E88A 4DE5A 2PTQA 2D27A 2HVGA 3GZHA 2A84A 2EJCA 4YIKA 2D28C 4FZJA 4NLEA 3ISJA 2G3DA 3OCFA 4EEIA 3GTDA 3NO9A 3EMOA 3IODA 4EF6A 1YFEA 3LE8A 4APAA 1TJVA 3F4SA 1U0LA 4EFKA 5F92A 2X3FA 1KQ7A 4MQ6A 3IMGA 3UY4A 3MXTA 1N2JA
chains in the Genus database with same CATH topology
3CI0I 2LMEA 2GR7A 3CFIA 2RETA 2GR8A 3EMOA 5BW0B 3CI0J 3CI0K
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CI0 I;  2LME A;  2GR7 A;  3CFI A;  2RET A;  2GR8 A;  3EMO A;  5BW0 B;  3CI0 K; 
#chains in the Genus database with same CATH topology
 4NSL A;  3UA0 A;  3CFF L;  3LF4 A;  3Q12 A;  2E9F A;  4MUF A;  2JAU A;  4MUM A;  3CI0 I;  4HGV A;  1V8F A;  4G5F A;  4DDM A;  4MWO A;  1C3C A;  2FUS A;  3IOE A;  1HY1 A;  2QGA B;  5G2F A;  2A88 A;  1YFM A;  2GW4 A;  2LME A;  3E04 A;  4MUN A;  2IEC A;  2JAO A;  3RRP A;  1IHO A;  4MUG A;  5F91 A;  2A7X A;  1J3U A;  2JAW A;  1DCN A;  5D6B A;  4APB A;  3IUB A;  3AG6 A;  1FUO A;  1Z4P X;  4MUL A;  1JSW A;  3QBP A;  3R6V A;  4MUI A;  3HL6 A;  1U16 A;  3CFI A;  1U15 A;  5KWV A;  1Z4Q A;  4L6A A;  1HY0 A;  3IUE A;  2PFM A;  2GR7 A;  1FUP A;  3IVC A;  1Z4M A;  3U13 A;  3INN A;  3RD8 A;  1AUW A;  4L6C A;  2YV5 A;  2RCN A;  2GR8 A;  1Z4J A;  2RET A;  1N2H A;  2I52 A;  1TJW A;  1Z4L A;  1FUQ A;  1DOF A;  1MOP A;  2G2S A;  1RE5 A;  1I0A A;  3N8H A;  1Q91 A;  3COW A;  1N2O A;  4MUK A;  1IW7 D;  4YIH A;  3BHG A;  4MX2 A;  3CI0 K;  3COZ A;  3F4T A;  5HG0 A;  3MUE A;  3UK2 A;  2X75 A;  2I7D A;  2OGF A;  4EFC A;  3AG5 A;  3IOB A;  5BW0 B;  1Z4I A;  2JAR A;  1UFV A;  3IVG A;  4IXJ A;  3IMC A;  3BWV A;  2A50 A;  4ADM A;  5EXC A;  2A53 A;  2G16 A;  3COY A;  4MUE A;  1T9H A;  1N2E A;  2A54 A;  4BHR A;  4ADL A;  1Q92 A;  1FUR A;  2A56 A;  2PTS A;  3COV A;  3QTT A;  4DDH A;  3OCE A;  3IOC A;  1N2B A;  1Z4K A;  1Q5N A;  3C8T A;  3F4R A;  4DDK A;  2A52 A;  3IME A;  1TJU A;  4L57 A;  2G5Z A;  2A86 A;  1MH9 A;  4MUJ A;  1K62 A;  3CFH L;  4NFL A;  4G5Y A;  1N2I A;  1TJ7 A;  3TV2 A;  1N2G A;  3Q10 A;  3IVX A;  4MUH A;  3CFA L;  3R6Q A;  4IQJ M;  1C3U A;  1K7W A;  1VDK A;  3U19 A;  1XWO A;  2PTR A;  5HW2 A;  4E88 A;  4DE5 A;  2PTQ A;  2D27 A;  2HVG A;  3GZH A;  2A84 A;  2EJC A;  4YIK A;  2D28 C;  4FZJ A;  4NLE A;  3ISJ A;  2G3D A;  3OCF A;  4EEI A;  3GTD A;  3NO9 A;  3EMO A;  3IOD A;  4EF6 A;  1YFE A;  3LE8 A;  4APA A;  1TJV A;  3F4S A;  1U0L A;  4EFK A;  5F92 A;  2X3F A;  1KQ7 A;  4MQ6 A;  3IMG A;  3UY4 A;  3MXT A;  1N2J A; 
#chains in the Genus database with same CATH homology
 3CI0 I;  2LME A;  2GR7 A;  3CFI A;  2RET A;  2GR8 A;  3EMO A;  5BW0 B;  3CI0 J;  3CI0 K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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