3CI0K

The crystal structure of the gspk-gspi-gspj complex from enterotoxigenic escherichia coli type 2 secretion system
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
287
structure length
280
Chain Sequence
GRTRSQQEYQQALWYSASAESLALSALSLSLKNEKRVHLEQPWASGPRFFPLPQGQIAVTLRDAQACFNLNALAQPTTASRPLAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRLGREDSEYLARSVPFYAANQPLADISEMRVVQGMDAGLYQKLKPLVCALPMTRQQININTLDVTQSVILEALFDARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQLKTVLSVDSNYFWLRSDITVNEIELTMNSLIVRMGPQHFSVLWHQTGES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
source organism Escherichia coli
publication title Structure of the GspK-GspI-GspJ complex from the enterotoxigenic Escherichia coli type 2 secretion system.
pubmed doi rcsb
molecule keywords Pseudopilin GspI
total genus 83
structure length 280
sequence length 287
ec nomenclature
pdb deposition date 2008-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF03934 T2SSK Type II secretion system (T2SS), protein K
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.60 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 EpsJ-like 3ci0K02
1.10.40.60 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 EpsJ-like 3ci0K03
3.30.1300.30 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 GSPII I/J protein-like 3ci0K01
3CFIA 3CI0K 2GR7A 2GR8A 2RETA 2LMEA 3EMOA 3CI0I 5BW0B
chains in the Genus database with same CATH superfamily
1TJWA 1N2BA 4G5FA 4MUNA 5HG0A 3Q12A 2D27A 3IMCA 2A53A 5F92A 5HW2A 3EMOA 1HY1A 3IUEA 4MUIA 3N8HA 3UY4A 3Q10A 1C3CA 1MOPA 4MQ6A 2JAWA 4MULA 3IVCA 4FZJA 4DE5A 3IMEA 1T9HA 3ISJA 5BW0B 1TJVA 3IOBA 4APBA 4NSLA 4G5YA 4APAA 3UA0A 1FUOA 2PTSA 4EF6A 2OGFA 1YFMA 3LE8A 1J3UA 2I7DA 1HY0A 3HL6A 5F91A 1Q92A 1TJUA 4EFKA 3IODA 3CI0I 3OCEA 2A86A 1N2OA 1IW7D 2A50A 4MUEA 4DDKA 2A56A 3MUEA 4MUKA 1AUWA 2JAUA 3U13A 3CFFL 4YIKA 1FUPA 1VDKA 1Z4QA 2HVGA 3BHGA 3OCFA 2I52A 4IXJA 3C8TA 1JSWA 3GZHA 3INNA 2D28C 2G5ZA 2X75A 2PTQA 3AG6A 2QGAB 1N2EA 3IOCA 2X3FA 4ADLA 3RRPA 3IVGA 3F4TA 4YIHA 2PTRA 4HGVA 4E88A 1IHOA 4MUMA 2RETA 2IECA 4MUJA 3QBPA 3R6VA 1K7WA 4MX2A 2G16A 5D6BA 4BHRA 3CFAL 2EJCA 3E04A 1FURA 2JARA 4MUFA 4ADMA 1Z4IA 1I0AA 2YV5A 3CFHL 1Z4JA 3IOEA 3CI0K 1Z4PX 3IMGA 3COZA 2G3DA 1RE5A 3CFIA 1DCNA 4L6CA 1N2IA 1YFEA 2G2SA 3GTDA 1V8FA 3COVA 5KWVA 2LMEA 1U16A 2E9FA 3BWVA 3F4SA 3COYA 2A54A 3NO9A 2A88A 1C3UA 3QTTA 3F4RA 4MWOA 4DDMA 4L57A 1KQ7A 1XWOA 3TV2A 2A52A 3R6QA 1DOFA 1N2GA 2RCNA 3RD8A 2FUSA 2A7XA 3AG5A 2PFMA 1Z4KA 3U19A 3UK2A 1Z4MA 3IUBA 1MH9A 5EXCA 1Q91A 2JAOA 4NLEA 5G2FA 4L6AA 1Q5NA 4EEIA 1FUQA 1UFVA 2A84A 1TJ7A 1Z4LA 1N2JA 1U15A 4EFCA 4MUGA 4NFLA 3COWA 2GR7A 2GR8A 4DDHA 3LF4A 3MXTA 4MUHA 4IQJM 1K62A 2GW4A 1U0LA 3IVXA 1N2HA
chains in the Genus database with same CATH topology
3CFIA 3CI0K 2GR7A 2GR8A 2RETA 2LMEA 3EMOA 3CI0I 5BW0B 3CI0J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CFI A;  3CI0 K;  2GR7 A;  2GR8 A;  2RET A;  2LME A;  3EMO A;  3CI0 I;  5BW0 B; 
#chains in the Genus database with same CATH topology
 1TJW A;  1N2B A;  4G5F A;  4MUN A;  5HG0 A;  3Q12 A;  2D27 A;  3IMC A;  2A53 A;  5F92 A;  5HW2 A;  3EMO A;  1HY1 A;  3IUE A;  4MUI A;  3N8H A;  3UY4 A;  3Q10 A;  1C3C A;  1MOP A;  4MQ6 A;  2JAW A;  4MUL A;  3IVC A;  4FZJ A;  4DE5 A;  3IME A;  1T9H A;  3ISJ A;  5BW0 B;  1TJV A;  3IOB A;  4APB A;  4NSL A;  4G5Y A;  4APA A;  3UA0 A;  1FUO A;  2PTS A;  4EF6 A;  2OGF A;  1YFM A;  3LE8 A;  1J3U A;  2I7D A;  1HY0 A;  3HL6 A;  5F91 A;  1Q92 A;  1TJU A;  4EFK A;  3IOD A;  3CI0 I;  3OCE A;  2A86 A;  1N2O A;  1IW7 D;  2A50 A;  4MUE A;  4DDK A;  2A56 A;  3MUE A;  4MUK A;  1AUW A;  2JAU A;  3U13 A;  3CFF L;  4YIK A;  1FUP A;  1VDK A;  1Z4Q A;  2HVG A;  3BHG A;  3OCF A;  2I52 A;  4IXJ A;  3C8T A;  1JSW A;  3GZH A;  3INN A;  2D28 C;  2G5Z A;  2X75 A;  2PTQ A;  3AG6 A;  2QGA B;  1N2E A;  3IOC A;  2X3F A;  4ADL A;  3RRP A;  3IVG A;  3F4T A;  4YIH A;  2PTR A;  4HGV A;  4E88 A;  1IHO A;  4MUM A;  2RET A;  2IEC A;  4MUJ A;  3QBP A;  3R6V A;  1K7W A;  4MX2 A;  2G16 A;  5D6B A;  4BHR A;  3CFA L;  2EJC A;  3E04 A;  1FUR A;  2JAR A;  4MUF A;  4ADM A;  1Z4I A;  1I0A A;  2YV5 A;  3CFH L;  1Z4J A;  3IOE A;  3CI0 K;  1Z4P X;  3IMG A;  3COZ A;  2G3D A;  1RE5 A;  3CFI A;  1DCN A;  4L6C A;  1N2I A;  1YFE A;  2G2S A;  3GTD A;  1V8F A;  3COV A;  5KWV A;  2LME A;  1U16 A;  2E9F A;  3BWV A;  3F4S A;  3COY A;  2A54 A;  3NO9 A;  2A88 A;  1C3U A;  3QTT A;  3F4R A;  4MWO A;  4DDM A;  4L57 A;  1KQ7 A;  1XWO A;  3TV2 A;  2A52 A;  3R6Q A;  1DOF A;  1N2G A;  2RCN A;  3RD8 A;  2FUS A;  2A7X A;  3AG5 A;  2PFM A;  1Z4K A;  3U19 A;  3UK2 A;  1Z4M A;  3IUB A;  1MH9 A;  5EXC A;  1Q91 A;  2JAO A;  4NLE A;  5G2F A;  4L6A A;  1Q5N A;  4EEI A;  1FUQ A;  1UFV A;  2A84 A;  1TJ7 A;  1Z4L A;  1N2J A;  1U15 A;  4EFC A;  4MUG A;  4NFL A;  3COW A;  2GR7 A;  2GR8 A;  4DDH A;  3LF4 A;  3MXT A;  4MUH A;  4IQJ M;  1K62 A;  2GW4 A;  1U0L A;  3IVX A;  1N2H A; 
#chains in the Genus database with same CATH homology
 3CFI A;  3CI0 K;  2GR7 A;  2GR8 A;  2RET A;  2LME A;  3EMO A;  3CI0 I;  5BW0 B;  3CI0 J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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