3CI0K

The crystal structure of the gspk-gspi-gspj complex from enterotoxigenic escherichia coli type 2 secretion system
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
287
structure length
280
Chain Sequence
GRTRSQQEYQQALWYSASAESLALSALSLSLKNEKRVHLEQPWASGPRFFPLPQGQIAVTLRDAQACFNLNALAQPTTASRPLAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRLGREDSEYLARSVPFYAANQPLADISEMRVVQGMDAGLYQKLKPLVCALPMTRQQININTLDVTQSVILEALFDARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQLKTVLSVDSNYFWLRSDITVNEIELTMNSLIVRMGPQHFSVLWHQTGES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the GspK-GspI-GspJ complex from the enterotoxigenic Escherichia coli type 2 secretion system.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Protein transport
molecule keywords Pseudopilin GspI
total genus 83
structure length 280
sequence length 287
ec nomenclature
pdb deposition date 2008-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF03934 T2SSK Type II secretion system (T2SS), protein K
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.60 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 EpsJ-like 3ci0K02
1.10.40.60 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 EpsJ-like 3ci0K03
3.30.1300.30 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 GSPII I/J protein-like 3ci0K01
3EMOA 2LMEA 5BW0B 2RETA 3CFIA 2GR7A 3CI0I 2GR8A 3CI0K
chains in the Genus database with same CATH superfamily
2PTRA 1YFEA 4MX2A 1MOPA 1Z4QA 2X3FA 3AG5A 4MUKA 2PFMA 1FUPA 3IOCA 2A86A 2A7XA 1N2BA 3GZHA 3U13A 3IMGA 3IMCA 1Z4PX 3ISJA 4EFCA 5BW0B 2D28C 5HG0A 1J3UA 1XWOA 1N2OA 1V8FA 1Q91A 2A88A 2I52A 3CFHL 4NFLA 1HY0A 3RRPA 3IOBA 5F92A 3LE8A 4MUIA 2JAWA 2GW4A 1AUWA 3COZA 5D6BA 1U16A 1Z4LA 2X75A 2A53A 1UFVA 1YFMA 4MULA 4APBA 2GR8A 2A56A 3BWVA 1IW7D 2RCNA 3MUEA 1C3UA 2E9FA 2RETA 2FUSA 4MUMA 4G5YA 2GR7A 3INNA 4YIHA 4EF6A 2I7DA 3Q12A 2PTQA 1T9HA 4NSLA 4BHRA 3U19A 4MUNA 2HVGA 3N8HA 1HY1A 2JAOA 3IODA 1DOFA 5EXCA 3CI0K 3CFAL 3Q10A 3R6VA 1N2JA 4DE5A 3AG6A 4EFKA 1U0LA 1Z4IA 2PTSA 1JSWA 3QBPA 4HGVA 4YIKA 2G16A 3IUEA 3CFFL 1Z4KA 5KWVA 1U15A 4L6CA 3IUBA 1K62A 3IVGA 4IQJM 4EEIA 2EJCA 2A84A 1N2GA 4FZJA 3OCFA 1FUOA 4MUGA 1KQ7A 1N2EA 2G3DA 1Z4JA 3CFIA 2A50A 1Z4MA 4MUEA 1FUQA 4NLEA 5F91A 1IHOA 3GTDA 4DDHA 3EMOA 3NO9A 3TV2A 3F4TA 1DCNA 1FURA 2A54A 4E88A 3C8TA 3LF4A 4L57A 3OCEA 3IVCA 1TJ7A 2D27A 3BHGA 4MQ6A 4APAA 3HL6A 1Q92A 4IXJA 1C3CA 3IVXA 1TJWA 5HW2A 3COYA 3UK2A 4DDMA 4MWOA 1RE5A 3IMEA 2G2SA 4MUFA 2OGFA 3CI0I 4DDKA 2JARA 1N2IA 2A52A 3UY4A 2LMEA 4L6AA 4ADMA 3IOEA 1VDKA 1N2HA 3QTTA 3RD8A 3MXTA 3R6QA 1TJUA 3COVA 4G5FA 2QGAB 1K7WA 1Q5NA 3F4SA 2IECA 4MUHA 3UA0A 1MH9A 2YV5A 2G5ZA 1TJVA 2JAUA 3E04A 4ADLA 3COWA 3F4RA 4MUJA 5G2FA 1I0AA
chains in the Genus database with same CATH topology
3EMOA 2LMEA 5BW0B 2RETA 3CFIA 2GR7A 3CI0I 3CI0J 2GR8A 3CI0K
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EMO A;  2LME A;  5BW0 B;  2RET A;  3CFI A;  2GR7 A;  3CI0 I;  2GR8 A;  3CI0 K; 
#chains in the Genus database with same CATH topology
 2PTR A;  1YFE A;  4MX2 A;  1MOP A;  1Z4Q A;  2X3F A;  3AG5 A;  4MUK A;  2PFM A;  1FUP A;  3IOC A;  2A86 A;  2A7X A;  1N2B A;  3GZH A;  3U13 A;  3IMG A;  3IMC A;  1Z4P X;  3ISJ A;  4EFC A;  5BW0 B;  2D28 C;  5HG0 A;  1J3U A;  1XWO A;  1N2O A;  1V8F A;  1Q91 A;  2A88 A;  2I52 A;  3CFH L;  4NFL A;  1HY0 A;  3RRP A;  3IOB A;  5F92 A;  3LE8 A;  4MUI A;  2JAW A;  2GW4 A;  1AUW A;  3COZ A;  5D6B A;  1U16 A;  1Z4L A;  2X75 A;  2A53 A;  1UFV A;  1YFM A;  4MUL A;  4APB A;  2GR8 A;  2A56 A;  3BWV A;  1IW7 D;  2RCN A;  3MUE A;  1C3U A;  2E9F A;  2RET A;  2FUS A;  4MUM A;  4G5Y A;  2GR7 A;  3INN A;  4YIH A;  4EF6 A;  2I7D A;  3Q12 A;  2PTQ A;  1T9H A;  4NSL A;  4BHR A;  3U19 A;  4MUN A;  2HVG A;  3N8H A;  1HY1 A;  2JAO A;  3IOD A;  1DOF A;  5EXC A;  3CI0 K;  3CFA L;  3Q10 A;  3R6V A;  1N2J A;  4DE5 A;  3AG6 A;  4EFK A;  1U0L A;  1Z4I A;  2PTS A;  1JSW A;  3QBP A;  4HGV A;  4YIK A;  2G16 A;  3IUE A;  3CFF L;  1Z4K A;  5KWV A;  1U15 A;  4L6C A;  3IUB A;  1K62 A;  3IVG A;  4IQJ M;  4EEI A;  2EJC A;  2A84 A;  1N2G A;  4FZJ A;  3OCF A;  1FUO A;  4MUG A;  1KQ7 A;  1N2E A;  2G3D A;  1Z4J A;  3CFI A;  2A50 A;  1Z4M A;  4MUE A;  1FUQ A;  4NLE A;  5F91 A;  1IHO A;  3GTD A;  4DDH A;  3EMO A;  3NO9 A;  3TV2 A;  3F4T A;  1DCN A;  1FUR A;  2A54 A;  4E88 A;  3C8T A;  3LF4 A;  4L57 A;  3OCE A;  3IVC A;  1TJ7 A;  2D27 A;  3BHG A;  4MQ6 A;  4APA A;  3HL6 A;  1Q92 A;  4IXJ A;  1C3C A;  3IVX A;  1TJW A;  5HW2 A;  3COY A;  3UK2 A;  4DDM A;  4MWO A;  1RE5 A;  3IME A;  2G2S A;  4MUF A;  2OGF A;  3CI0 I;  4DDK A;  2JAR A;  1N2I A;  2A52 A;  3UY4 A;  2LME A;  4L6A A;  4ADM A;  3IOE A;  1VDK A;  1N2H A;  3QTT A;  3RD8 A;  3MXT A;  3R6Q A;  1TJU A;  3COV A;  4G5F A;  2QGA B;  1K7W A;  1Q5N A;  3F4S A;  2IEC A;  4MUH A;  3UA0 A;  1MH9 A;  2YV5 A;  2G5Z A;  1TJV A;  2JAU A;  3E04 A;  4ADL A;  3COW A;  3F4R A;  4MUJ A;  5G2F A;  1I0A A; 
#chains in the Genus database with same CATH homology
 3EMO A;  2LME A;  5BW0 B;  2RET A;  3CFI A;  2GR7 A;  3CI0 I;  3CI0 J;  2GR8 A;  3CI0 K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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