3CI0K

The crystal structure of the gspk-gspi-gspj complex from enterotoxigenic escherichia coli type 2 secretion system
Total Genus 83
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
287
structure length
280
Chain Sequence
GRTRSQQEYQQALWYSASAESLALSALSLSLKNEKRVHLEQPWASGPRFFPLPQGQIAVTLRDAQACFNLNALAQPTTASRPLAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRLGREDSEYLARSVPFYAANQPLADISEMRVVQGMDAGLYQKLKPLVCALPMTRQQININTLDVTQSVILEALFDARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQLKTVLSVDSNYFWLRSDITVNEIELTMNSLIVRMGPQHFSVLWHQTGES
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structure of the GspK-GspI-GspJ complex from the enterotoxigenic Escherichia coli type 2 secretion system.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Protein transport
molecule keywords Pseudopilin GspI
total genus 83
structure length 280
sequence length 287
ec nomenclature
pdb deposition date 2008-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF03934 T2SSK Type II secretion system (T2SS), protein K
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.60 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 EpsJ-like 3ci0K02
1.10.40.60 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 EpsJ-like 3ci0K03
3.30.1300.30 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 GSPII I/J protein-like 3ci0K01
3CI0I 3EMOA 3CFIA 2RETA 3CI0K 5BW0B 2GR8A 2GR7A 2LMEA
chains in the Genus database with same CATH superfamily
4BHRA 1N2GA 2OGFA 3GTDA 3IUEA 4ADLA 3U13A 4DDMA 1HY1A 1IHOA 4L57A 5G2FA 4FZJA 3COYA 3INNA 2D28C 1T9HA 1KQ7A 1Z4MA 4DE5A 3IVCA 1DOFA 4NLEA 2I52A 2IECA 1K62A 1N2EA 2A88A 2GW4A 4IXJA 3IMEA 3F4RA 2JAWA 3R6QA 2JAOA 1N2BA 1FUOA 1JSWA 4L6AA 1Z4KA 3OCFA 4APBA 3QTTA 1Z4IA 5HG0A 1YFEA 1UFVA 3F4SA 4MWOA 2HVGA 4YIKA 3GZHA 2G5ZA 3CI0K 1Q92A 3MUEA 4EFKA 1XWOA 3RD8A 3UA0A 2JARA 1N2HA 1FUPA 3COWA 3NO9A 4MUEA 4G5FA 1U15A 1U16A 4NFLA 3R6VA 2G3DA 1FURA 2QGAB 1VDKA 4HGVA 4EFCA 3CFAL 2GR8A 5BW0B 1TJUA 3N8HA 1FUQA 2PFMA 2A84A 2X3FA 1K7WA 2E9FA 3CFFL 1RE5A 1J3UA 3IMGA 2GR7A 3UK2A 4IQJM 1TJ7A 1TJWA 5KWVA 2A7XA 1Q5NA 4EEIA 4ADMA 4MUHA 3U19A 4DDHA 3QBPA 5F92A 1N2IA 1N2OA 3AG6A 1N2JA 4EF6A 3CFHL 3RRPA 2X75A 2JAUA 2A53A 3OCEA 3BHGA 4MUMA 2FUSA 4APAA 2PTQA 1MOPA 3IVXA 3C8TA 3COVA 4E88A 3TV2A 2PTSA 3ISJA 1C3UA 1V8FA 1I0AA 2G16A 3BWVA 3CFIA 4NSLA 3E04A 3LE8A 1DCNA 3IUBA 1TJVA 3IOEA 5D6BA 1MH9A 1Z4LA 1YFMA 1Z4PX 3F4TA 3IOBA 4L6CA 2D27A 2A56A 1Z4JA 3COZA 3LF4A 1HY0A 4MUKA 3EMOA 4DDKA 2PTRA 2EJCA 4MX2A 4MUJA 4G5YA 4MUFA 2G2SA 5F91A 3UY4A 3CI0I 1C3CA 2I7DA 5HW2A 4MUNA 3Q10A 2A52A 1Z4QA 3IMCA 3Q12A 2RCNA 3IODA 2LMEA 2A50A 4MQ6A 1AUWA 2A86A 3MXTA 1U0LA 4MUGA 2RETA 5EXCA 3AG5A 2YV5A 4YIHA 3HL6A 3IVGA 2A54A 4MUIA 4MULA 1Q91A 1IW7D 3IOCA
chains in the Genus database with same CATH topology
3CI0I 3EMOA 3CFIA 2RETA 3CI0K 5BW0B 2GR8A 2GR7A 3CI0J 2LMEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CI0 I;  3EMO A;  3CFI A;  2RET A;  3CI0 K;  5BW0 B;  2GR8 A;  2GR7 A;  2LME A; 
#chains in the Genus database with same CATH topology
 4BHR A;  1N2G A;  2OGF A;  3GTD A;  3IUE A;  4ADL A;  3U13 A;  4DDM A;  1HY1 A;  1IHO A;  4L57 A;  5G2F A;  4FZJ A;  3COY A;  3INN A;  2D28 C;  1T9H A;  1KQ7 A;  1Z4M A;  4DE5 A;  3IVC A;  1DOF A;  4NLE A;  2I52 A;  2IEC A;  1K62 A;  1N2E A;  2A88 A;  2GW4 A;  4IXJ A;  3IME A;  3F4R A;  2JAW A;  3R6Q A;  2JAO A;  1N2B A;  1FUO A;  1JSW A;  4L6A A;  1Z4K A;  3OCF A;  4APB A;  3QTT A;  1Z4I A;  5HG0 A;  1YFE A;  1UFV A;  3F4S A;  4MWO A;  2HVG A;  4YIK A;  3GZH A;  2G5Z A;  3CI0 K;  1Q92 A;  3MUE A;  4EFK A;  1XWO A;  3RD8 A;  3UA0 A;  2JAR A;  1N2H A;  1FUP A;  3COW A;  3NO9 A;  4MUE A;  4G5F A;  1U15 A;  1U16 A;  4NFL A;  3R6V A;  2G3D A;  1FUR A;  2QGA B;  1VDK A;  4HGV A;  4EFC A;  3CFA L;  2GR8 A;  5BW0 B;  1TJU A;  3N8H A;  1FUQ A;  2PFM A;  2A84 A;  2X3F A;  1K7W A;  2E9F A;  3CFF L;  1RE5 A;  1J3U A;  3IMG A;  2GR7 A;  3UK2 A;  4IQJ M;  1TJ7 A;  1TJW A;  5KWV A;  2A7X A;  1Q5N A;  4EEI A;  4ADM A;  4MUH A;  3U19 A;  4DDH A;  3QBP A;  5F92 A;  1N2I A;  1N2O A;  3AG6 A;  1N2J A;  4EF6 A;  3CFH L;  3RRP A;  2X75 A;  2JAU A;  2A53 A;  3OCE A;  3BHG A;  4MUM A;  2FUS A;  4APA A;  2PTQ A;  1MOP A;  3IVX A;  3C8T A;  3COV A;  4E88 A;  3TV2 A;  2PTS A;  3ISJ A;  1C3U A;  1V8F A;  1I0A A;  2G16 A;  3BWV A;  3CFI A;  4NSL A;  3E04 A;  3LE8 A;  1DCN A;  3IUB A;  1TJV A;  3IOE A;  5D6B A;  1MH9 A;  1Z4L A;  1YFM A;  1Z4P X;  3F4T A;  3IOB A;  4L6C A;  2D27 A;  2A56 A;  1Z4J A;  3COZ A;  3LF4 A;  1HY0 A;  4MUK A;  3EMO A;  4DDK A;  2PTR A;  2EJC A;  4MX2 A;  4MUJ A;  4G5Y A;  4MUF A;  2G2S A;  5F91 A;  3UY4 A;  3CI0 I;  1C3C A;  2I7D A;  5HW2 A;  4MUN A;  3Q10 A;  2A52 A;  1Z4Q A;  3IMC A;  3Q12 A;  2RCN A;  3IOD A;  2LME A;  2A50 A;  4MQ6 A;  1AUW A;  2A86 A;  3MXT A;  1U0L A;  4MUG A;  2RET A;  5EXC A;  3AG5 A;  2YV5 A;  4YIH A;  3HL6 A;  3IVG A;  2A54 A;  4MUI A;  4MUL A;  1Q91 A;  1IW7 D;  3IOC A; 
#chains in the Genus database with same CATH homology
 3CI0 I;  3EMO A;  3CFI A;  2RET A;  3CI0 K;  5BW0 B;  2GR8 A;  2GR7 A;  3CI0 J;  2LME A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...