3CI0K

The crystal structure of the gspk-gspi-gspj complex from enterotoxigenic escherichia coli type 2 secretion system
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
287
structure length
280
Chain Sequence
b'GRTRSQQEYQQALWYSASAESLALSALSLSLKNEKRVHLEQPWASGPRFFPLPQGQIAVTLRDAQACFNLNALAQPTTASRPLAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRLGREDSEYLARSVPFYAANQPLADISEMRVVQGMDAGLYQKLKPLVCALPMTRQQININTLDVTQSVILEALFDARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQLKTVLSVDSNYFWLRSDITVNEIELTMNSLIVRMGPQHFSVLWHQTGES'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the GspK-GspI-GspJ complex from the enterotoxigenic Escherichia coli type 2 secretion system.
pubmed doi rcsb
molecule keywords Pseudopilin GspI
source organism Escherichia coli
molecule tags Protein transport
total genus 83
structure length 280
sequence length 287
ec nomenclature
pdb deposition date 2008-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF03934 T2SSK Type II secretion system (T2SS), protein K
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.60 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 EpsJ-like 3ci0K02
1.10.40.60 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 EpsJ-like 3ci0K03
3.30.1300.30 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 GSPII I/J protein-like 3ci0K01
2RETA 2GR8A 2GR7A 5BW0B 3CFIA 3CI0K 3EMOA 2LMEA 3CI0I
chains in the Genus database with same CATH superfamily
1TJUA 1N2OA 3AG6A 4DE5A 1U15A 3IUBA 3MXTA 1FURA 1Z4JA 1C3CA 4MQ6A 4EF6A 3U13A 3R6VA 3TV2A 1DCNA 4EFCA 2GW4A 4IQJM 3Q12A 1MH9A 1YFMA 3CFFL 4NSLA 1N2BA 2G16A 3COWA 3UA0A 1J3UA 1MOPA 3QBPA 2A86A 2GR7A 2OGFA 3COVA 1HY1A 2X3FA 2X75A 4L6CA 4NFLA 2IECA 3IMGA 3R6QA 2A52A 1IHOA 2D27A 2A53A 3NO9A 5HW2A 4FZJA 4IXJA 4MULA 4MUHA 1Q5NA 2A56A 2EJCA 1I0AA 2I7DA 3IOEA 4BHRA 2LMEA 1Q91A 4EEIA 2A84A 4G5YA 2PTQA 5F91A 4DDMA 3IVCA 1FUOA 1Z4QA 3COYA 2JARA 3CFAL 1KQ7A 1U0LA 1TJ7A 3IOCA 1C3UA 3MUEA 4G5FA 1T9HA 4YIHA 1K7WA 3UK2A 4MUEA 4MUJA 2PTRA 1N2JA 1IW7D 3N8HA 2G3DA 1YFEA 3RRPA 3QTTA 2RCNA 2JAOA 4MUGA 5HG0A 1TJVA 3INNA 1JSWA 3IUEA 3LE8A 1U16A 1Z4IA 1Z4KA 4EFKA 2JAWA 2JAUA 2HVGA 1V8FA 2RETA 3GZHA 3IMEA 5KWVA 5D6BA 1UFVA 2A7XA 1XWOA 3IVGA 2YV5A 1AUWA 4DDHA 5EXCA 2A54A 2A50A 2G2SA 2GR8A 5G2FA 3E04A 3OCEA 2A88A 3F4RA 3CI0I 1Z4MA 3IMCA 2E9FA 4ADMA 1DOFA 4MWOA 3LF4A 2QGAB 3CI0K 4ADLA 3HL6A 3ISJA 1K62A 4MX2A 4MUNA 2FUSA 3GTDA 4MUIA 3BWVA 2I52A 3COZA 4HGVA 3OCFA 4MUMA 5F92A 3AG5A 4MUKA 1RE5A 2G5ZA 1Z4LA 1TJWA 2PFMA 3BHGA 4YIKA 1N2EA 1FUPA 1Z4PX 3RD8A 3CFIA 5BW0B 4L57A 4MUFA 4DDKA 4APAA 1Q92A 4L6AA 2PTSA 3U19A 2D28C 1FUQA 4E88A 3IOBA 1HY0A 3Q10A 3C8TA 1N2IA 3EMOA 3IODA 4APBA 1N2HA 3F4TA 4NLEA 1N2GA 3F4SA 3IVXA 3CFHL 1VDKA 3UY4A
chains in the Genus database with same CATH topology
2RETA 2GR8A 3CI0J 2GR7A 5BW0B 3CFIA 3CI0K 3EMOA 2LMEA 3CI0I
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RET A;  2GR8 A;  2GR7 A;  5BW0 B;  3CFI A;  3CI0 K;  3EMO A;  2LME A;  3CI0 I; 
#chains in the Genus database with same CATH topology
 1TJU A;  1N2O A;  3AG6 A;  4DE5 A;  1U15 A;  3IUB A;  3MXT A;  1FUR A;  1Z4J A;  1C3C A;  4MQ6 A;  4EF6 A;  3U13 A;  3R6V A;  3TV2 A;  1DCN A;  4EFC A;  2GW4 A;  4IQJ M;  3Q12 A;  1MH9 A;  1YFM A;  3CFF L;  4NSL A;  1N2B A;  2G16 A;  3COW A;  3UA0 A;  1J3U A;  1MOP A;  3QBP A;  2A86 A;  2GR7 A;  2OGF A;  3COV A;  1HY1 A;  2X3F A;  2X75 A;  4L6C A;  4NFL A;  2IEC A;  3IMG A;  3R6Q A;  2A52 A;  1IHO A;  2D27 A;  2A53 A;  3NO9 A;  5HW2 A;  4FZJ A;  4IXJ A;  4MUL A;  4MUH A;  1Q5N A;  2A56 A;  2EJC A;  1I0A A;  2I7D A;  3IOE A;  4BHR A;  2LME A;  1Q91 A;  4EEI A;  2A84 A;  4G5Y A;  2PTQ A;  5F91 A;  4DDM A;  3IVC A;  1FUO A;  1Z4Q A;  3COY A;  2JAR A;  3CFA L;  1KQ7 A;  1U0L A;  1TJ7 A;  3IOC A;  1C3U A;  3MUE A;  4G5F A;  1T9H A;  4YIH A;  1K7W A;  3UK2 A;  4MUE A;  4MUJ A;  2PTR A;  1N2J A;  1IW7 D;  3N8H A;  2G3D A;  1YFE A;  3RRP A;  3QTT A;  2RCN A;  2JAO A;  4MUG A;  5HG0 A;  1TJV A;  3INN A;  1JSW A;  3IUE A;  3LE8 A;  1U16 A;  1Z4I A;  1Z4K A;  4EFK A;  2JAW A;  2JAU A;  2HVG A;  1V8F A;  2RET A;  3GZH A;  3IME A;  5KWV A;  5D6B A;  1UFV A;  2A7X A;  1XWO A;  3IVG A;  2YV5 A;  1AUW A;  4DDH A;  5EXC A;  2A54 A;  2A50 A;  2G2S A;  2GR8 A;  5G2F A;  3E04 A;  3OCE A;  2A88 A;  3F4R A;  3CI0 I;  1Z4M A;  3IMC A;  2E9F A;  4ADM A;  1DOF A;  4MWO A;  3LF4 A;  2QGA B;  3CI0 K;  4ADL A;  3HL6 A;  3ISJ A;  1K62 A;  4MX2 A;  4MUN A;  2FUS A;  3GTD A;  4MUI A;  3BWV A;  2I52 A;  3COZ A;  4HGV A;  3OCF A;  4MUM A;  5F92 A;  3AG5 A;  4MUK A;  1RE5 A;  2G5Z A;  1Z4L A;  1TJW A;  2PFM A;  3BHG A;  4YIK A;  1N2E A;  1FUP A;  1Z4P X;  3RD8 A;  3CFI A;  5BW0 B;  4L57 A;  4MUF A;  4DDK A;  4APA A;  1Q92 A;  4L6A A;  2PTS A;  3U19 A;  2D28 C;  1FUQ A;  4E88 A;  3IOB A;  1HY0 A;  3Q10 A;  3C8T A;  1N2I A;  3EMO A;  3IOD A;  4APB A;  1N2H A;  3F4T A;  4NLE A;  1N2G A;  3F4S A;  3IVX A;  3CFH L;  1VDK A;  3UY4 A; 
#chains in the Genus database with same CATH homology
 2RET A;  2GR8 A;  3CI0 J;  2GR7 A;  5BW0 B;  3CFI A;  3CI0 K;  3EMO A;  2LME A;  3CI0 I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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