3CI0K

The crystal structure of the gspk-gspi-gspj complex from enterotoxigenic escherichia coli type 2 secretion system
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
287
structure length
280
Chain Sequence
b'GRTRSQQEYQQALWYSASAESLALSALSLSLKNEKRVHLEQPWASGPRFFPLPQGQIAVTLRDAQACFNLNALAQPTTASRPLAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRLGREDSEYLARSVPFYAANQPLADISEMRVVQGMDAGLYQKLKPLVCALPMTRQQININTLDVTQSVILEALFDARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQLKTVLSVDSNYFWLRSDITVNEIELTMNSLIVRMGPQHFSVLWHQTGES'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Pseudopilin GspI
publication title Structure of the GspK-GspI-GspJ complex from the enterotoxigenic Escherichia coli type 2 secretion system.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Protein transport
total genus 83
structure length 280
sequence length 287
ec nomenclature
pdb deposition date 2008-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF03934 T2SSK Type II secretion system (T2SS), protein K
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.60 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 EpsJ-like 3ci0K02
1.10.40.60 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 EpsJ-like 3ci0K03
3.30.1300.30 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 GSPII I/J protein-like 3ci0K01
3CI0K 3CI0I 2LMEA 5BW0B 2RETA 3EMOA 3CFIA 2GR7A 2GR8A
chains in the Genus database with same CATH superfamily
1AUWA 1UFVA 5D6BA 2G16A 3COYA 1V8FA 2A88A 1HY1A 5HW2A 2GR7A 1FUOA 4NSLA 1JSWA 1N2GA 3QTTA 1I0AA 2A7XA 5G2FA 5BW0B 3AG6A 3EMOA 1N2HA 4MUKA 4MUJA 1Q92A 3IMGA 5EXCA 1HY0A 3IMEA 1VDKA 4YIHA 4MUGA 2PFMA 3RD8A 1Q91A 1XWOA 3BWVA 3E04A 1MH9A 1N2EA 1TJWA 3N8HA 4L6CA 2GW4A 1U16A 3CFIA 2YV5A 3IMCA 4IQJM 2A52A 4MULA 1N2IA 3U19A 2JAWA 3F4SA 3NO9A 3GTDA 4EFKA 5HG0A 3R6VA 4L6AA 3ISJA 4HGVA 3Q12A 3IOCA 1FURA 1U15A 1Q5NA 1N2JA 4MUNA 5KWVA 4L57A 3C8TA 3RRPA 2A84A 2G3DA 3IUBA 4YIKA 2PTSA 3LE8A 2X3FA 1C3UA 2EJCA 4NLEA 3CFHL 3LF4A 3IUEA 3Q10A 4ADMA 2A86A 4MUFA 1TJ7A 1MOPA 1RE5A 1DCNA 3AG5A 2JARA 1DOFA 2IECA 3COZA 4APBA 2G2SA 4EF6A 1YFEA 3IVXA 1IHOA 1YFMA 2JAOA 3R6QA 2QGAB 1IW7D 1Z4JA 4MUMA 2G5ZA 3UY4A 3OCFA 5F91A 1N2BA 1C3CA 3IODA 3OCEA 1Z4LA 2A54A 4EFCA 3IVCA 3MXTA 1FUQA 4MUEA 3COVA 1FUPA 2FUSA 2I7DA 4DE5A 3IOEA 1T9HA 3CI0K 3GZHA 3INNA 2RCNA 4ADLA 2PTRA 3MUEA 1K62A 2HVGA 2E9FA 4EEIA 4G5YA 4MX2A 1U0LA 4G5FA 1KQ7A 4MUHA 4DDMA 3CI0I 3IOBA 4FZJA 4MUIA 4BHRA 2JAUA 2LMEA 4DDKA 1TJVA 2A53A 1Z4KA 3TV2A 3QBPA 3IVGA 2PTQA 1Z4PX 3CFFL 3UK2A 2A50A 1N2OA 4APAA 1Z4IA 3HL6A 1J3UA 2D28C 3F4TA 3U13A 2X75A 2I52A 1Z4MA 4E88A 2A56A 1TJUA 5F92A 2RETA 4DDHA 3UA0A 4NFLA 3COWA 2OGFA 2D27A 3F4RA 3CFAL 4IXJA 4MQ6A 3BHGA 4MWOA 1Z4QA 1K7WA 2GR8A
chains in the Genus database with same CATH topology
3CI0K 3CI0I 2LMEA 5BW0B 2RETA 3EMOA 3CFIA 2GR7A 2GR8A 3CI0J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CI0 K;  3CI0 I;  2LME A;  5BW0 B;  2RET A;  3EMO A;  3CFI A;  2GR7 A;  2GR8 A; 
#chains in the Genus database with same CATH topology
 1AUW A;  1UFV A;  5D6B A;  2G16 A;  3COY A;  1V8F A;  2A88 A;  1HY1 A;  5HW2 A;  2GR7 A;  1FUO A;  4NSL A;  1JSW A;  1N2G A;  3QTT A;  1I0A A;  2A7X A;  5G2F A;  5BW0 B;  3AG6 A;  3EMO A;  1N2H A;  4MUK A;  4MUJ A;  1Q92 A;  3IMG A;  5EXC A;  1HY0 A;  3IME A;  1VDK A;  4YIH A;  4MUG A;  2PFM A;  3RD8 A;  1Q91 A;  1XWO A;  3BWV A;  3E04 A;  1MH9 A;  1N2E A;  1TJW A;  3N8H A;  4L6C A;  2GW4 A;  1U16 A;  3CFI A;  2YV5 A;  3IMC A;  4IQJ M;  2A52 A;  4MUL A;  1N2I A;  3U19 A;  2JAW A;  3F4S A;  3NO9 A;  3GTD A;  4EFK A;  5HG0 A;  3R6V A;  4L6A A;  3ISJ A;  4HGV A;  3Q12 A;  3IOC A;  1FUR A;  1U15 A;  1Q5N A;  1N2J A;  4MUN A;  5KWV A;  4L57 A;  3C8T A;  3RRP A;  2A84 A;  2G3D A;  3IUB A;  4YIK A;  2PTS A;  3LE8 A;  2X3F A;  1C3U A;  2EJC A;  4NLE A;  3CFH L;  3LF4 A;  3IUE A;  3Q10 A;  4ADM A;  2A86 A;  4MUF A;  1TJ7 A;  1MOP A;  1RE5 A;  1DCN A;  3AG5 A;  2JAR A;  1DOF A;  2IEC A;  3COZ A;  4APB A;  2G2S A;  4EF6 A;  1YFE A;  3IVX A;  1IHO A;  1YFM A;  2JAO A;  3R6Q A;  2QGA B;  1IW7 D;  1Z4J A;  4MUM A;  2G5Z A;  3UY4 A;  3OCF A;  5F91 A;  1N2B A;  1C3C A;  3IOD A;  3OCE A;  1Z4L A;  2A54 A;  4EFC A;  3IVC A;  3MXT A;  1FUQ A;  4MUE A;  3COV A;  1FUP A;  2FUS A;  2I7D A;  4DE5 A;  3IOE A;  1T9H A;  3CI0 K;  3GZH A;  3INN A;  2RCN A;  4ADL A;  2PTR A;  3MUE A;  1K62 A;  2HVG A;  2E9F A;  4EEI A;  4G5Y A;  4MX2 A;  1U0L A;  4G5F A;  1KQ7 A;  4MUH A;  4DDM A;  3CI0 I;  3IOB A;  4FZJ A;  4MUI A;  4BHR A;  2JAU A;  2LME A;  4DDK A;  1TJV A;  2A53 A;  1Z4K A;  3TV2 A;  3QBP A;  3IVG A;  2PTQ A;  1Z4P X;  3CFF L;  3UK2 A;  2A50 A;  1N2O A;  4APA A;  1Z4I A;  3HL6 A;  1J3U A;  2D28 C;  3F4T A;  3U13 A;  2X75 A;  2I52 A;  1Z4M A;  4E88 A;  2A56 A;  1TJU A;  5F92 A;  2RET A;  4DDH A;  3UA0 A;  4NFL A;  3COW A;  2OGF A;  2D27 A;  3F4R A;  3CFA L;  4IXJ A;  4MQ6 A;  3BHG A;  4MWO A;  1Z4Q A;  1K7W A;  2GR8 A; 
#chains in the Genus database with same CATH homology
 3CI0 K;  3CI0 I;  2LME A;  5BW0 B;  2RET A;  3EMO A;  3CFI A;  2GR7 A;  2GR8 A;  3CI0 J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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