2RETA

The crystal structure of a binary complex of two pseudopilins: epsi and epsj from the type 2 secretion system of vibrio vulnificus
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
84
structure length
84
Chain Sequence
TVGYLEQKMFAAMVADNQMAMVMLNPKNLKASNGEEELAGQTWYWKVAPVATTQPLLKAFDVSVAATTQASPIITVRSYVASEN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
source organism Vibrio vulnificus
publication title The crystal structure of a binary complex of two pseudopilins: EpsI and EpsJ from the type 2 secretion system of Vibrio vulnificus.
pubmed doi rcsb
molecule keywords Pseudopilin EpsI
total genus 12
structure length 84
sequence length 84
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2007-09-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02501 T2SSI Type II secretion system (T2SS), protein I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1300.30 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 GSPII I/J protein-like 2retA00
3EMOA 2GR7A 3CI0I 5BW0B 2GR8A 2LMEA 3CI0K 3CFIA 2RETA
chains in the Genus database with same CATH superfamily
3CFIA 3IVCA 3AG5A 3IOEA 4G5YA 3AG6A 3IMGA 3CFAL 3COZA 4EFKA 2OGFA 2IECA 4MUGA 3IOCA 2G2SA 4DE5A 2EJCA 3HL6A 3CFHL 4FZJA 4MQ6A 3COYA 5G2FA 4DDMA 4MUJA 4MUIA 3IVGA 1N2EA 2A7XA 3UK2A 3N8HA 4DDHA 3CFFL 5KWVA 2GR7A 3IODA 3CI0K 2G3DA 3IVXA 4MUHA 1N2JA 3LE8A 3INNA 2X3FA 4MUNA 3QTTA 2A84A 1N2OA 2RETA 4IXJA 1N2IA 1N2GA 2G5ZA 5EXCA 4MUEA 3IMCA 3UY4A 3EMOA 3ISJA 4BHRA 3Q10A 3IOBA 3Q12A 3MXTA 1N2HA 3UA0A 3IMEA 3COVA 2I52A 2GW4A 1V8FA 2A52A 3CI0I 2A86A 5HG0A 2LMEA 3IUEA 1UFVA 3COWA 1MOPA 1N2BA 2A56A 4DDKA 1IHOA 4G5FA 2A50A 3IUBA 5BW0B 2A54A 3LF4A 4MULA 4MUKA 4MUFA 3MUEA 2A88A 2GR8A 2A53A 4EF6A 2G16A
chains in the Genus database with same CATH topology
3EMOA 2GR7A 3CI0I 5BW0B 2GR8A 2LMEA 3CI0K 3CFIA 3CI0J 2RETA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EMO A;  2GR7 A;  3CI0 I;  5BW0 B;  2GR8 A;  2LME A;  3CI0 K;  3CFI A;  2RET A; 
#chains in the Genus database with same CATH topology
 3CFI A;  3IVC A;  3AG5 A;  3IOE A;  4G5Y A;  3AG6 A;  3IMG A;  3CFA L;  3COZ A;  4EFK A;  2OGF A;  2IEC A;  4MUG A;  3IOC A;  2G2S A;  4DE5 A;  2EJC A;  3HL6 A;  3CFH L;  4FZJ A;  4MQ6 A;  3COY A;  5G2F A;  4DDM A;  4MUJ A;  4MUI A;  3IVG A;  1N2E A;  2A7X A;  3UK2 A;  3N8H A;  4DDH A;  3CFF L;  5KWV A;  2GR7 A;  3IOD A;  3CI0 K;  2G3D A;  3IVX A;  4MUH A;  1N2J A;  3LE8 A;  3INN A;  2X3F A;  4MUN A;  3QTT A;  2A84 A;  1N2O A;  2RET A;  4IXJ A;  1N2I A;  1N2G A;  2G5Z A;  5EXC A;  4MUE A;  3IMC A;  3UY4 A;  3EMO A;  3ISJ A;  4BHR A;  3Q10 A;  3IOB A;  3Q12 A;  3MXT A;  1N2H A;  3UA0 A;  3IME A;  3COV A;  2I52 A;  2GW4 A;  1V8F A;  2A52 A;  3CI0 I;  2A86 A;  5HG0 A;  2LME A;  3IUE A;  1UFV A;  3COW A;  1MOP A;  1N2B A;  2A56 A;  4DDK A;  1IHO A;  4G5F A;  2A50 A;  3IUB A;  5BW0 B;  2A54 A;  3LF4 A;  4MUL A;  4MUK A;  4MUF A;  3MUE A;  2A88 A;  2GR8 A;  2A53 A;  4EF6 A;  2G16 A; 
#chains in the Genus database with same CATH homology
 3EMO A;  2GR7 A;  3CI0 I;  5BW0 B;  2GR8 A;  2LME A;  3CI0 K;  3CFI A;  3CI0 J;  2RET A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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