2RETA

The crystal structure of a binary complex of two pseudopilins: epsi and epsj from the type 2 secretion system of vibrio vulnificus
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
84
structure length
84
Chain Sequence
TVGYLEQKMFAAMVADNQMAMVMLNPKNLKASNGEEELAGQTWYWKVAPVATTQPLLKAFDVSVAATTQASPIITVRSYVASEN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The crystal structure of a binary complex of two pseudopilins: EpsI and EpsJ from the type 2 secretion system of Vibrio vulnificus.
pubmed doi rcsb
molecule tags Protein transport
source organism Vibrio vulnificus
molecule keywords Pseudopilin EpsI
total genus 12
structure length 84
sequence length 84
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2007-09-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02501 T2SSI Type II secretion system (T2SS), protein I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1300.30 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 GSPII I/J protein-like 2retA00
2GR8A 5BW0B 3CI0I 3CFIA 2RETA 2GR7A 2LMEA 3EMOA 3CI0K
chains in the Genus database with same CATH superfamily
5BW0B 3INNA 3IOEA 3UK2A 5KWVA 2GW4A 1UFVA 4G5YA 2I52A 3CFHL 4MUEA 1N2BA 1N2IA 2EJCA 1N2EA 3N8HA 3COWA 4DDKA 4MUIA 2RETA 3Q12A 2A84A 3CI0K 3MXTA 2GR8A 5EXCA 1N2HA 5G2FA 4BHRA 1N2JA 2A88A 2G5ZA 2A50A 3IMGA 3CFIA 4MUGA 1N2OA 4G5FA 3IOCA 2LMEA 4MUHA 4MUFA 3IVCA 3CI0I 1IHOA 2IECA 3COYA 4MUKA 2G2SA 4DE5A 3CFAL 2A7XA 3IODA 3IMEA 4MUJA 2OGFA 3LE8A 2A86A 3IUBA 2X3FA 3IUEA 3EMOA 4EF6A 2A54A 3UY4A 3Q10A 3UA0A 3IVXA 3IMCA 1N2GA 2A52A 4FZJA 3ISJA 4EFKA 2A53A 1V8FA 3AG5A 3COZA 3CFFL 4MUNA 5HG0A 4IXJA 4MULA 3MUEA 4DDHA 4DDMA 3IVGA 3IOBA 4MQ6A 3QTTA 1MOPA 3LF4A 2G3DA 2GR7A 2A56A 3AG6A 2G16A 3COVA 3HL6A
chains in the Genus database with same CATH topology
2GR8A 5BW0B 3CI0I 3CI0J 3CFIA 2RETA 2GR7A 2LMEA 3EMOA 3CI0K
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GR8 A;  5BW0 B;  3CI0 I;  3CFI A;  2RET A;  2GR7 A;  2LME A;  3EMO A;  3CI0 K; 
#chains in the Genus database with same CATH topology
 5BW0 B;  3INN A;  3IOE A;  3UK2 A;  5KWV A;  2GW4 A;  1UFV A;  4G5Y A;  2I52 A;  3CFH L;  4MUE A;  1N2B A;  1N2I A;  2EJC A;  1N2E A;  3N8H A;  3COW A;  4DDK A;  4MUI A;  2RET A;  3Q12 A;  2A84 A;  3CI0 K;  3MXT A;  2GR8 A;  5EXC A;  1N2H A;  5G2F A;  4BHR A;  1N2J A;  2A88 A;  2G5Z A;  2A50 A;  3IMG A;  3CFI A;  4MUG A;  1N2O A;  4G5F A;  3IOC A;  2LME A;  4MUH A;  4MUF A;  3IVC A;  3CI0 I;  1IHO A;  2IEC A;  3COY A;  4MUK A;  2G2S A;  4DE5 A;  3CFA L;  2A7X A;  3IOD A;  3IME A;  4MUJ A;  2OGF A;  3LE8 A;  2A86 A;  3IUB A;  2X3F A;  3IUE A;  3EMO A;  4EF6 A;  2A54 A;  3UY4 A;  3Q10 A;  3UA0 A;  3IVX A;  3IMC A;  1N2G A;  2A52 A;  4FZJ A;  3ISJ A;  4EFK A;  2A53 A;  1V8F A;  3AG5 A;  3COZ A;  3CFF L;  4MUN A;  5HG0 A;  4IXJ A;  4MUL A;  3MUE A;  4DDH A;  4DDM A;  3IVG A;  3IOB A;  4MQ6 A;  3QTT A;  1MOP A;  3LF4 A;  2G3D A;  2GR7 A;  2A56 A;  3AG6 A;  2G16 A;  3COV A;  3HL6 A; 
#chains in the Genus database with same CATH homology
 2GR8 A;  5BW0 B;  3CI0 I;  3CI0 J;  3CFI A;  2RET A;  2GR7 A;  2LME A;  3EMO A;  3CI0 K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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