3A5NS

Crystal structure of a dictyostelium p109a ca2+-actin in complex with human gelsolin segment 1
Total Genus 38

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
123
structure length
123
Chain Sequence
VEHPEFLKAGKEPGLQIWRVEKFDLVPVPTCLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (8-12)TIV2 (54-57)S4 (45-53)TII1 (12-15)S1 (18-25)TI1 (41-44)TIV1 (24-27)3H1 (34-36)EMPTYTI3 (112-115)S3 (39-41)TII2 (36-39)S5 (59-67)TI'2 (90-93)AH3 (106-110)AH2 (73-90)S6 (95-100)TII3 (100-103)TIV3 (101-104)TVIII1 (110-113)S7 (117-119)TI2 (68-71)S2 (28-31)Updating...
connected with : NaN
publication title Structural basis for actin assembly, activation of ATP hydrolysis, and delayed phosphate release
pubmed doi rcsb
molecule tags Contractile protein
source organism Homo sapiens
molecule keywords Gelsolin
total genus 38
structure length 123
sequence length 123
ec nomenclature
pdb deposition date 2009-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 3a5nS00
3CI5G 1SVYA 1M2VB 3A5NS 1M2OA 5KYWA 4PKIG 1SVRA 3FG6A 1P8ZG 1QPVA 3EGDA 1CNUA 3A5OS 3A5LS 4JD2H 2LLFA 4KEDA 5KYUB 1D0NA 1M2VA 1H1VG 1T2LA 1UDMA 1C0GS 4KEEA 5HVKB 5FAFA 1KCQA 1V6FA 2MV2A 2VACA 5KYUA 2NUTB 5FAEA 1NMDG 5KYYB 3CJBG 2LJ8A 3EG9B 3Q2BA 3FFKA 1YVNG 1EQYS 2MP4A 1C0FS 1AK7A 1VFQA 3EH1A 2FGHA 1P8XA 2VIKA 1M4JA 4S10C 1X67A 2NUTA 1CFYA 4CBWG 1Q8GA 2L72A 1NM1G 2FF6G 2HD7A 1PCXA 1WM4A 3EG9A 1AK6A 4LIZA 2FH2A 1PD0A 1T3YA 2XFAA 4CBXG 2FH4A 1J72A 1D4XG 5HVKD 1TVJA 1COFA 4BEX1 5KYWB 4KEFA 3FG7A 3EFOB 5L6WC 1T44G 3CJCG 1JHWA 1VKKA 2KVKA 1NPHA 1TMWA 1WNJA 4CBUG 2FF3A 1YAGG 3L50A 5KYXB 2FH1A 1DEJS 1Q8XA 5KYYA 3A5MS 2VILA 1F7SA 3CIPG 1MDUA 1HQZ1 4PKGG 1ESVS 3EH2A 5IVUA 2LXXA 2XF1A 3EGXB 2FH3A 3EFOA 3FFNA 4Z94G 2NUPB 1T3XA 1PD1A 1WFSA 2I2QA 5KYXA 4PKHB 3TU5B 2W0IA 1SVQA 2D8BA 3EGDB 2MOTA 1AHQA 5KYNA 3DAWB 1RGIG 3EGXA 2NUPA 5DD2A 1NLVG 2QTVA 5A1MA
chains in the Genus database with same CATH superfamily
3CI5G 1SVYA 1M2VB 3A5NS 1M2OA 5KYWA 4PKIG 1SVRA 3FG6A 1P8ZG 1QPVA 3EGDA 1CNUA 3A5OS 3A5LS 4JD2H 2LLFA 4KEDA 5KYUB 3DA7A 1D0NA 1M2VA 1H1VG 1T2LA 1UDMA 1C0GS 4KEEA 5HVKB 5FAFA 1KCQA 1V6FA 2MV2A 2VACA 5KYUA 2NUTB 5FAEA 1NMDG 5KYYB 3CJBG 2LJ8A 3EG9B 3Q2BA 3FFKA 1YVNG 1EQYS 2MP4A 1C0FS 1AK7A 1VFQA 3EH1A 2FGHA 1P8XA 2VIKA 1M4JA 4S10C 1X67A 2NUTA 1CFYA 4CBWG 1Q8GA 2L72A 1NM1G 2FF6G 2HD7A 1PCXA 1WM4A 3EG9A 1AK6A 4LIZA 2FH2A 1PD0A 1T3YA 2XFAA 4CBXG 2FH4A 1J72A 1D4XG 5HVKD 1TVJA 1COFA 4BEX1 5KYWB 4KEFA 3FG7A 3EFOB 5L6WC 1T44G 3CJCG 1JHWA 1VKKA 2KVKA 1NPHA 1TMWA 1WNJA 4CBUG 2FF3A 1YAGG 3L50A 5KYXB 2FH1A 1DEJS 1Q8XA 5KYYA 3A5MS 2VILA 1F7SA 3CIPG 1MDUA 1HQZ1 4PKGG 1ESVS 3EH2A 5IVUA 2LXXA 2XF1A 3EGXB 2FH3A 3EFOA 3FFNA 4Z94G 2NUPB 1T3XA 1PD1A 1WFSA 2I2QA 5KYXA 4PKHB 3TU5B 2W0IA 1SVQA 2D8BA 3EGDB 2MOTA 1AHQA 5KYNA 3DAWB 1RGIG 3EGXA 2NUPA 5DD2A 1NLVG 2QTVA 5A1MA
chains in the Genus database with same CATH topology
3CI5G 1SVYA 1M2VB 3A5NS 1M2OA 5KYWA 4PKIG 1SVRA 3FG6A 1P8ZG 1QPVA 3EGDA 1CNUA 3A5OS 3A5LS 4JD2H 2LLFA 4KEDA 5KYUB 3DA7A 1D0NA 1M2VA 1H1VG 1T2LA 1UDMA 1C0GS 4KEEA 5HVKB 5FAFA 1KCQA 1V6FA 2MV2A 2VACA 5KYUA 2NUTB 5FAEA 1NMDG 5KYYB 3CJBG 2LJ8A 3EG9B 3Q2BA 3FFKA 1YVNG 1EQYS 2MP4A 1C0FS 1AK7A 1VFQA 3EH1A 2FGHA 1P8XA 2VIKA 1M4JA 4S10C 1X67A 2NUTA 1CFYA 4CBWG 1Q8GA 2L72A 1NM1G 2FF6G 2HD7A 1PCXA 1WM4A 3EG9A 1AK6A 4LIZA 2FH2A 1PD0A 1T3YA 2XFAA 4CBXG 2FH4A 1J72A 1D4XG 5HVKD 1TVJA 1COFA 4BEX1 5KYWB 4KEFA 3FG7A 3EFOB 5L6WC 1T44G 3CJCG 1JHWA 1VKKA 2KVKA 1NPHA 1TMWA 1WNJA 4CBUG 2FF3A 1YAGG 3L50A 5KYXB 2FH1A 1DEJS 1Q8XA 5KYYA 3A5MS 2VILA 1F7SA 3CIPG 1MDUA 1HQZ1 4PKGG 1ESVS 3EH2A 5IVUA 2LXXA 2XF1A 3EGXB 2FH3A 3EFOA 3FFNA 4Z94G 2NUPB 1T3XA 1PD1A 1WFSA 2I2QA 5KYXA 4PKHB 3TU5B 2W0IA 1SVQA 2D8BA 3EGDB 2MOTA 1AHQA 5KYNA 3DAWB 1RGIG 3EGXA 2NUPA 5DD2A 1NLVG 2QTVA 5A1MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CI5 G;  1SVY A;  1M2V B;  3A5N S;  1M2O A;  5KYW A;  4PKI G;  1SVR A;  3FG6 A;  1P8Z G;  1QPV A;  3EGD A;  1CNU A;  3A5O S;  3A5L S;  4JD2 H;  2LLF A;  4KED A;  5KYU B;  1D0N A;  1M2V A;  1H1V G;  1T2L A;  1UDM A;  1C0G S;  4KEE A;  5HVK B;  5FAF A;  1KCQ A;  1V6F A;  2MV2 A;  2VAC A;  5KYU A;  2NUT B;  5FAE A;  1NMD G;  5KYY B;  3CJB G;  2LJ8 A;  3EG9 B;  3Q2B A;  3FFK A;  1YVN G;  1EQY S;  2MP4 A;  1C0F S;  1AK7 A;  1VFQ A;  3EH1 A;  2FGH A;  1P8X A;  2VIK A;  1M4J A;  4S10 C;  1X67 A;  2NUT A;  1CFY A;  4CBW G;  1Q8G A;  2L72 A;  1NM1 G;  2FF6 G;  2HD7 A;  1PCX A;  1WM4 A;  3EG9 A;  1AK6 A;  4LIZ A;  2FH2 A;  1PD0 A;  1T3Y A;  2XFA A;  4CBX G;  2FH4 A;  1J72 A;  1D4X G;  5HVK D;  1TVJ A;  1COF A;  4BEX 1;  5KYW B;  4KEF A;  3FG7 A;  3EFO B;  5L6W C;  1T44 G;  3CJC G;  1JHW A;  1VKK A;  2KVK A;  1NPH A;  1TMW A;  1WNJ A;  4CBU G;  2FF3 A;  1YAG G;  3L50 A;  5KYX B;  2FH1 A;  1DEJ S;  1Q8X A;  5KYY A;  3A5M S;  2VIL A;  1F7S A;  3CIP G;  1MDU A;  1HQZ 1;  4PKG G;  1ESV S;  3EH2 A;  5IVU A;  2LXX A;  2XF1 A;  3EGX B;  2FH3 A;  3EFO A;  3FFN A;  4Z94 G;  2NUP B;  1T3X A;  1PD1 A;  1WFS A;  2I2Q A;  5KYX A;  4PKH B;  3TU5 B;  2W0I A;  1SVQ A;  2D8B A;  3EGD B;  2MOT A;  1AHQ A;  5KYN A;  3DAW B;  1RGI G;  3EGX A;  2NUP A;  5DD2 A;  1NLV G;  2QTV A;  5A1M A; 
#chains in the Genus database with same CATH topology
 3CI5 G;  1SVY A;  1M2V B;  3A5N S;  1M2O A;  5KYW A;  4PKI G;  1SVR A;  3FG6 A;  1P8Z G;  1QPV A;  3EGD A;  1CNU A;  3A5O S;  3A5L S;  4JD2 H;  2LLF A;  4KED A;  5KYU B;  3DA7 A;  1D0N A;  1M2V A;  1H1V G;  1T2L A;  1UDM A;  1C0G S;  4KEE A;  5HVK B;  5FAF A;  1KCQ A;  1V6F A;  2MV2 A;  2VAC A;  5KYU A;  2NUT B;  5FAE A;  1NMD G;  5KYY B;  3CJB G;  2LJ8 A;  3EG9 B;  3Q2B A;  3FFK A;  1YVN G;  1EQY S;  2MP4 A;  1C0F S;  1AK7 A;  1VFQ A;  3EH1 A;  2FGH A;  1P8X A;  2VIK A;  1M4J A;  4S10 C;  1X67 A;  2NUT A;  1CFY A;  4CBW G;  1Q8G A;  2L72 A;  1NM1 G;  2FF6 G;  2HD7 A;  1PCX A;  1WM4 A;  3EG9 A;  1AK6 A;  4LIZ A;  2FH2 A;  1PD0 A;  1T3Y A;  2XFA A;  4CBX G;  2FH4 A;  1J72 A;  1D4X G;  5HVK D;  1TVJ A;  1COF A;  4BEX 1;  5KYW B;  4KEF A;  3FG7 A;  3EFO B;  5L6W C;  1T44 G;  3CJC G;  1JHW A;  1VKK A;  2KVK A;  1NPH A;  1TMW A;  1WNJ A;  4CBU G;  2FF3 A;  1YAG G;  3L50 A;  5KYX B;  2FH1 A;  1DEJ S;  1Q8X A;  5KYY A;  3A5M S;  2VIL A;  1F7S A;  3CIP G;  1MDU A;  1HQZ 1;  4PKG G;  1ESV S;  3EH2 A;  5IVU A;  2LXX A;  2XF1 A;  3EGX B;  2FH3 A;  3EFO A;  3FFN A;  4Z94 G;  2NUP B;  1T3X A;  1PD1 A;  1WFS A;  2I2Q A;  5KYX A;  4PKH B;  3TU5 B;  2W0I A;  1SVQ A;  2D8B A;  3EGD B;  2MOT A;  1AHQ A;  5KYN A;  3DAW B;  1RGI G;  3EGX A;  2NUP A;  5DD2 A;  1NLV G;  2QTV A;  5A1M A; 
#chains in the Genus database with same CATH homology
 3CI5 G;  1SVY A;  1M2V B;  3A5N S;  1M2O A;  5KYW A;  4PKI G;  1SVR A;  3FG6 A;  1P8Z G;  1QPV A;  3EGD A;  1CNU A;  3A5O S;  3A5L S;  4JD2 H;  2LLF A;  4KED A;  5KYU B;  3DA7 A;  1D0N A;  1M2V A;  1H1V G;  1T2L A;  1UDM A;  1C0G S;  4KEE A;  5HVK B;  5FAF A;  1KCQ A;  1V6F A;  2MV2 A;  2VAC A;  5KYU A;  2NUT B;  5FAE A;  1NMD G;  5KYY B;  3CJB G;  2LJ8 A;  3EG9 B;  3Q2B A;  3FFK A;  1YVN G;  1EQY S;  2MP4 A;  1C0F S;  1AK7 A;  1VFQ A;  3EH1 A;  2FGH A;  1P8X A;  2VIK A;  1M4J A;  4S10 C;  1X67 A;  2NUT A;  1CFY A;  4CBW G;  1Q8G A;  2L72 A;  1NM1 G;  2FF6 G;  2HD7 A;  1PCX A;  1WM4 A;  3EG9 A;  1AK6 A;  4LIZ A;  2FH2 A;  1PD0 A;  1T3Y A;  2XFA A;  4CBX G;  2FH4 A;  1J72 A;  1D4X G;  5HVK D;  1TVJ A;  1COF A;  4BEX 1;  5KYW B;  4KEF A;  3FG7 A;  3EFO B;  5L6W C;  1T44 G;  3CJC G;  1JHW A;  1VKK A;  2KVK A;  1NPH A;  1TMW A;  1WNJ A;  4CBU G;  2FF3 A;  1YAG G;  3L50 A;  5KYX B;  2FH1 A;  1DEJ S;  1Q8X A;  5KYY A;  3A5M S;  2VIL A;  1F7S A;  3CIP G;  1MDU A;  1HQZ 1;  4PKG G;  1ESV S;  3EH2 A;  5IVU A;  2LXX A;  2XF1 A;  3EGX B;  2FH3 A;  3EFO A;  3FFN A;  4Z94 G;  2NUP B;  1T3X A;  1PD1 A;  1WFS A;  2I2Q A;  5KYX A;  4PKH B;  3TU5 B;  2W0I A;  1SVQ A;  2D8B A;  3EGD B;  2MOT A;  1AHQ A;  5KYN A;  3DAW B;  1RGI G;  3EGX A;  2NUP A;  5DD2 A;  1NLV G;  2QTV A;  5A1M A; 
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