3UA0A

N-terminal domain of bombyx mori fibroin mediates the assembly of silk in response to ph decrease
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
83
structure length
79
Chain Sequence
FDEDYFGSDVTVQSSNTTDEIIRDASGAVIEEQITTKKMQRKNILGKNEKMIKTFVITTDSDGNESIVEEDVLMKTLSD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title N-Terminal Domain of Bombyx mori Fibroin Mediates the Assembly of Silk in Response to pH Decrease.
pubmed doi rcsb
molecule tags Protein fibril
source organism Bombyx mori
molecule keywords Fibroin heavy chain
total genus 1
structure length 79
sequence length 83
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-10-20
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1300.60 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 Pantoate--beta-alanine Ligase; Chain: A,domain 2 3ua0A00
3UA0A
chains in the Genus database with same CATH superfamily
3IUBA 3COVA 1N2JA 3CI0I 2A7XA 3IMGA 4MUJA 2GR7A 2A53A 2A54A 3COWA 3LE8A 3AG5A 2A88A 4FZJA 3COZA 4G5YA 5G2FA 2I52A 3UY4A 3AG6A 4MQ6A 1MOPA 2G5ZA 1UFVA 3N8HA 2A50A 2G3DA 3IOCA 4MUNA 5BW0B 1N2IA 3HL6A 4MUKA 4MUGA 3CFIA 5EXCA 3IVXA 4BHRA 5HG0A 2X3FA 1N2GA 3IOEA 2IECA 4MUEA 2GW4A 1N2OA 2G2SA 4DDMA 3UK2A 2A52A 2G16A 4MUIA 1N2EA 3IOBA 3CFAL 3MUEA 3CI0K 3MXTA 3IVGA 3IVCA 4MUFA 3EMOA 4MULA 1N2HA 2EJCA 3IODA 3QTTA 4IXJA 3CFFL 1N2BA 3COYA 2A56A 4DDHA 2LMEA 4G5FA 3IMCA 4EFKA 1V8FA 3Q12A 4DDKA 2RETA 3CFHL 3Q10A 3UA0A 2OGFA 4EF6A 3ISJA 3LF4A 2A84A 5KWVA 4MUHA 2A86A 1IHOA 3IMEA 4DE5A 2GR8A 3IUEA 3INNA
chains in the Genus database with same CATH topology
3IUBA 3COVA 1N2JA 2A7XA 3IMGA 4MUJA 2A53A 2A54A 3COWA 3LE8A 3AG5A 2A88A 4FZJA 3COZA 4G5YA 5G2FA 3UY4A 3AG6A 4MQ6A 1MOPA 2G5ZA 1UFVA 3N8HA 2A50A 2G3DA 3IOCA 4MUNA 1N2IA 3HL6A 4MUKA 4MUGA 5EXCA 3IVXA 4BHRA 5HG0A 2X3FA 1N2GA 3IOEA 4MUEA 2GW4A 1N2OA 2G2SA 4DDMA 3UK2A 2A52A 2G16A 4MUIA 1N2EA 3IOBA 3CFAL 3MUEA 3MXTA 3IVGA 3IVCA 4MUFA 4MULA 1N2HA 2EJCA 3IODA 3QTTA 4IXJA 3CFFL 1N2BA 3COYA 2A56A 4DDHA 4G5FA 3IMCA 4EFKA 1V8FA 3Q12A 4DDKA 3CFHL 3Q10A 3UA0A 4EF6A 3ISJA 3LF4A 2A84A 5KWVA 4MUHA 2A86A 1IHOA 3IMEA 4DE5A 3IUEA 3INNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UA0 A; 
#chains in the Genus database with same CATH topology
 3IUB A;  3COV A;  1N2J A;  3CI0 I;  2A7X A;  3IMG A;  4MUJ A;  2GR7 A;  2A53 A;  2A54 A;  3COW A;  3LE8 A;  3AG5 A;  2A88 A;  4FZJ A;  3COZ A;  4G5Y A;  5G2F A;  2I52 A;  3UY4 A;  3AG6 A;  4MQ6 A;  1MOP A;  2G5Z A;  1UFV A;  3N8H A;  2A50 A;  2G3D A;  3IOC A;  4MUN A;  5BW0 B;  1N2I A;  3HL6 A;  4MUK A;  4MUG A;  3CFI A;  5EXC A;  3IVX A;  4BHR A;  5HG0 A;  2X3F A;  1N2G A;  3IOE A;  2IEC A;  4MUE A;  2GW4 A;  1N2O A;  2G2S A;  4DDM A;  3UK2 A;  2A52 A;  2G16 A;  4MUI A;  1N2E A;  3IOB A;  3CFA L;  3MUE A;  3CI0 K;  3MXT A;  3IVG A;  3IVC A;  4MUF A;  3EMO A;  4MUL A;  1N2H A;  2EJC A;  3IOD A;  3QTT A;  4IXJ A;  3CFF L;  1N2B A;  3COY A;  2A56 A;  4DDH A;  2LME A;  4G5F A;  3IMC A;  4EFK A;  1V8F A;  3Q12 A;  4DDK A;  2RET A;  3CFH L;  3Q10 A;  3UA0 A;  2OGF A;  4EF6 A;  3ISJ A;  3LF4 A;  2A84 A;  5KWV A;  4MUH A;  2A86 A;  1IHO A;  3IME A;  4DE5 A;  2GR8 A;  3IUE A;  3INN A; 
#chains in the Genus database with same CATH homology
 3IUB A;  3COV A;  1N2J A;  2A7X A;  3IMG A;  4MUJ A;  2A53 A;  2A54 A;  3COW A;  3LE8 A;  3AG5 A;  2A88 A;  4FZJ A;  3COZ A;  4G5Y A;  5G2F A;  3UY4 A;  3AG6 A;  4MQ6 A;  1MOP A;  2G5Z A;  1UFV A;  3N8H A;  2A50 A;  2G3D A;  3IOC A;  4MUN A;  1N2I A;  3HL6 A;  4MUK A;  4MUG A;  5EXC A;  3IVX A;  4BHR A;  5HG0 A;  2X3F A;  1N2G A;  3IOE A;  4MUE A;  2GW4 A;  1N2O A;  2G2S A;  4DDM A;  3UK2 A;  2A52 A;  2G16 A;  4MUI A;  1N2E A;  3IOB A;  3CFA L;  3MUE A;  3MXT A;  3IVG A;  3IVC A;  4MUF A;  4MUL A;  1N2H A;  2EJC A;  3IOD A;  3QTT A;  4IXJ A;  3CFF L;  1N2B A;  3COY A;  2A56 A;  4DDH A;  4G5F A;  3IMC A;  4EFK A;  1V8F A;  3Q12 A;  4DDK A;  3CFH L;  3Q10 A;  3UA0 A;  4EF6 A;  3ISJ A;  3LF4 A;  2A84 A;  5KWV A;  4MUH A;  2A86 A;  1IHO A;  3IME A;  4DE5 A;  3IUE A;  3INN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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