5A1MA

Crystal structure of calcium-bound human adseverin domain a3
Total Genus 29
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
104
structure length
104
Chain Sequence
KMAKLYMVSDASGSMRVTVVAEENPFSMAMLLSEECFILDHGAAKQIFVWKGKDANPQERKAAMKTAEEFLQQMNYSKNTQIQVLPEGGETPIFKQFFKDWRDK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Calcium-Controlled Conformational Choreography in the N-Terminal Half of Adseverin.
pubmed doi rcsb
molecule tags Actin-binding protein
source organism Homo sapiens
molecule keywords ADSEVERIN
total genus 29
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2015-05-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 5a1mA00
1EQYS 3A5OS 2FH4A 5FAFA 1PCXA 2NUPB 3EGXA 4JD2H 4CBXG 1RGIG 1AHQA 1WNJA 4LIZA 2FH2A 1HQZ1 1CFYA 2VACA 3FFKA 1F7SA 1YVNG 3Q2BA 3EG9A 1T3YA 3L50A 1COFA 2L72A 3CJBG 1TMWA 2NUPA 1Q8XA 5KYNA 4CBWG 1NLVG 5KYWA 4KEEA 2VILA 5IVUA 1CNUA 1C0GS 1KCQA 1WFSA 4PKIG 3A5MS 3FG7A 1X67A 1M2OA 2NUTB 4CBUG 5L6WC 4Z94G 1P8ZG 3EH2A 5KYYB 1SVYA 3EFOA 4BEX1 1MDUA 3CI5G 2XF1A 1VFQA 5KYUB 1M2VB 3TU5B 1QPVA 3CJCG 3A5NS 2MOTA 2QTVA 1T2LA 1VKKA 1ESVS 1UDMA 1AK6A 2LLFA 3EGDB 1P8XA 5A1MA 1H1VG 1SVRA 2NUTA 4S10C 4KEDA 1PD0A 1C0FS 2FF3A 2W0IA 2MP4A 1WM4A 3DAWB 1TVJA 1D4XG 2FF6G 4KEFA 3EH1A 5KYXB 3EG9B 5HVKB 1PD1A 2FGHA 3FG6A 1T3XA 2D8BA 2FH3A 1NMDG 1AK7A 2KVKA 1SVQA 2I2QA 3FFNA 2XFAA 1NPHA 5KYWB 2HD7A 3A5LS 1NM1G 1DEJS 2FH1A 3EGXB 5KYXA 5KYYA 1D0NA 2LJ8A 4PKGG 1YAGG 5DD2A 4PKHB 1M4JA 1J72A 2MV2A 1Q8GA 2VIKA 3CIPG 1M2VA 5KYUA 1V6FA 5FAEA 2LXXA 5HVKD 1T44G 3EFOB 3EGDA 1JHWA
chains in the Genus database with same CATH superfamily
1EQYS 3A5OS 2FH4A 5FAFA 1PCXA 2NUPB 3EGXA 4JD2H 4CBXG 1RGIG 1AHQA 1WNJA 4LIZA 2FH2A 1HQZ1 1CFYA 2VACA 3FFKA 1F7SA 1YVNG 3Q2BA 3EG9A 1T3YA 3L50A 1COFA 2L72A 3CJBG 1TMWA 2NUPA 1Q8XA 5KYNA 4CBWG 1NLVG 5KYWA 4KEEA 2VILA 5IVUA 1CNUA 1C0GS 1KCQA 1WFSA 4PKIG 3A5MS 3FG7A 1X67A 1M2OA 2NUTB 4CBUG 5L6WC 4Z94G 1P8ZG 3EH2A 5KYYB 1SVYA 3EFOA 4BEX1 1MDUA 3CI5G 2XF1A 1VFQA 5KYUB 1M2VB 3TU5B 1QPVA 3CJCG 3A5NS 2MOTA 2QTVA 1T2LA 1VKKA 1ESVS 1UDMA 1AK6A 2LLFA 3EGDB 1P8XA 5A1MA 1H1VG 1SVRA 2NUTA 4S10C 4KEDA 1PD0A 1C0FS 2FF3A 2W0IA 2MP4A 1WM4A 3DAWB 1TVJA 1D4XG 2FF6G 4KEFA 3EH1A 5KYXB 3EG9B 5HVKB 1PD1A 2FGHA 3FG6A 1T3XA 2D8BA 2FH3A 1NMDG 1AK7A 2KVKA 1SVQA 2I2QA 3FFNA 2XFAA 1NPHA 5KYWB 2HD7A 3A5LS 1NM1G 1DEJS 2FH1A 3EGXB 5KYXA 5KYYA 1D0NA 2LJ8A 4PKGG 1YAGG 5DD2A 4PKHB 1M4JA 3DA7A 1J72A 2MV2A 1Q8GA 2VIKA 3CIPG 1M2VA 5KYUA 1V6FA 5FAEA 2LXXA 5HVKD 1T44G 3EFOB 3EGDA 1JHWA
chains in the Genus database with same CATH topology
1EQYS 3A5OS 2FH4A 5FAFA 1PCXA 2NUPB 3EGXA 4JD2H 4CBXG 1RGIG 1AHQA 1WNJA 4LIZA 2FH2A 1HQZ1 1CFYA 2VACA 3FFKA 1F7SA 1YVNG 3Q2BA 3EG9A 1T3YA 3L50A 1COFA 2L72A 3CJBG 1TMWA 2NUPA 1Q8XA 5KYNA 4CBWG 1NLVG 5KYWA 4KEEA 2VILA 5IVUA 1CNUA 1C0GS 1KCQA 1WFSA 4PKIG 3A5MS 3FG7A 1X67A 1M2OA 2NUTB 4CBUG 5L6WC 4Z94G 1P8ZG 3EH2A 5KYYB 1SVYA 3EFOA 4BEX1 1MDUA 3CI5G 2XF1A 1VFQA 5KYUB 1M2VB 3TU5B 1QPVA 3CJCG 3A5NS 2MOTA 2QTVA 1T2LA 1VKKA 1ESVS 1UDMA 1AK6A 2LLFA 3EGDB 1P8XA 5A1MA 1H1VG 1SVRA 2NUTA 4S10C 4KEDA 1PD0A 1C0FS 2FF3A 2W0IA 2MP4A 1WM4A 3DAWB 1TVJA 1D4XG 2FF6G 4KEFA 3EH1A 5KYXB 3EG9B 5HVKB 1PD1A 2FGHA 3FG6A 1T3XA 2D8BA 2FH3A 1NMDG 1AK7A 2KVKA 1SVQA 2I2QA 3FFNA 2XFAA 1NPHA 5KYWB 2HD7A 3A5LS 1NM1G 1DEJS 2FH1A 3EGXB 5KYXA 5KYYA 1D0NA 2LJ8A 4PKGG 1YAGG 5DD2A 4PKHB 1M4JA 3DA7A 1J72A 2MV2A 1Q8GA 2VIKA 3CIPG 1M2VA 5KYUA 1V6FA 5FAEA 2LXXA 5HVKD 1T44G 3EFOB 3EGDA 1JHWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EQY S;  3A5O S;  2FH4 A;  5FAF A;  1PCX A;  2NUP B;  3EGX A;  4JD2 H;  4CBX G;  1RGI G;  1AHQ A;  1WNJ A;  4LIZ A;  2FH2 A;  1HQZ 1;  1CFY A;  2VAC A;  3FFK A;  1F7S A;  1YVN G;  3Q2B A;  3EG9 A;  1T3Y A;  3L50 A;  1COF A;  2L72 A;  3CJB G;  1TMW A;  2NUP A;  1Q8X A;  5KYN A;  4CBW G;  1NLV G;  5KYW A;  4KEE A;  2VIL A;  5IVU A;  1CNU A;  1C0G S;  1KCQ A;  1WFS A;  4PKI G;  3A5M S;  3FG7 A;  1X67 A;  1M2O A;  2NUT B;  4CBU G;  5L6W C;  4Z94 G;  1P8Z G;  3EH2 A;  5KYY B;  1SVY A;  3EFO A;  4BEX 1;  1MDU A;  3CI5 G;  2XF1 A;  1VFQ A;  5KYU B;  1M2V B;  3TU5 B;  1QPV A;  3CJC G;  3A5N S;  2MOT A;  2QTV A;  1T2L A;  1VKK A;  1ESV S;  1UDM A;  1AK6 A;  2LLF A;  3EGD B;  1P8X A;  5A1M A;  1H1V G;  1SVR A;  2NUT A;  4S10 C;  4KED A;  1PD0 A;  1C0F S;  2FF3 A;  2W0I A;  2MP4 A;  1WM4 A;  3DAW B;  1TVJ A;  1D4X G;  2FF6 G;  4KEF A;  3EH1 A;  5KYX B;  3EG9 B;  5HVK B;  1PD1 A;  2FGH A;  3FG6 A;  1T3X A;  2D8B A;  2FH3 A;  1NMD G;  1AK7 A;  2KVK A;  1SVQ A;  2I2Q A;  3FFN A;  2XFA A;  1NPH A;  5KYW B;  2HD7 A;  3A5L S;  1NM1 G;  1DEJ S;  2FH1 A;  3EGX B;  5KYX A;  5KYY A;  1D0N A;  2LJ8 A;  4PKG G;  1YAG G;  5DD2 A;  4PKH B;  1M4J A;  1J72 A;  2MV2 A;  1Q8G A;  2VIK A;  3CIP G;  1M2V A;  5KYU A;  1V6F A;  5FAE A;  2LXX A;  5HVK D;  1T44 G;  3EFO B;  3EGD A;  1JHW A; 
#chains in the Genus database with same CATH topology
 1EQY S;  3A5O S;  2FH4 A;  5FAF A;  1PCX A;  2NUP B;  3EGX A;  4JD2 H;  4CBX G;  1RGI G;  1AHQ A;  1WNJ A;  4LIZ A;  2FH2 A;  1HQZ 1;  1CFY A;  2VAC A;  3FFK A;  1F7S A;  1YVN G;  3Q2B A;  3EG9 A;  1T3Y A;  3L50 A;  1COF A;  2L72 A;  3CJB G;  1TMW A;  2NUP A;  1Q8X A;  5KYN A;  4CBW G;  1NLV G;  5KYW A;  4KEE A;  2VIL A;  5IVU A;  1CNU A;  1C0G S;  1KCQ A;  1WFS A;  4PKI G;  3A5M S;  3FG7 A;  1X67 A;  1M2O A;  2NUT B;  4CBU G;  5L6W C;  4Z94 G;  1P8Z G;  3EH2 A;  5KYY B;  1SVY A;  3EFO A;  4BEX 1;  1MDU A;  3CI5 G;  2XF1 A;  1VFQ A;  5KYU B;  1M2V B;  3TU5 B;  1QPV A;  3CJC G;  3A5N S;  2MOT A;  2QTV A;  1T2L A;  1VKK A;  1ESV S;  1UDM A;  1AK6 A;  2LLF A;  3EGD B;  1P8X A;  5A1M A;  1H1V G;  1SVR A;  2NUT A;  4S10 C;  4KED A;  1PD0 A;  1C0F S;  2FF3 A;  2W0I A;  2MP4 A;  1WM4 A;  3DAW B;  1TVJ A;  1D4X G;  2FF6 G;  4KEF A;  3EH1 A;  5KYX B;  3EG9 B;  5HVK B;  1PD1 A;  2FGH A;  3FG6 A;  1T3X A;  2D8B A;  2FH3 A;  1NMD G;  1AK7 A;  2KVK A;  1SVQ A;  2I2Q A;  3FFN A;  2XFA A;  1NPH A;  5KYW B;  2HD7 A;  3A5L S;  1NM1 G;  1DEJ S;  2FH1 A;  3EGX B;  5KYX A;  5KYY A;  1D0N A;  2LJ8 A;  4PKG G;  1YAG G;  5DD2 A;  4PKH B;  1M4J A;  3DA7 A;  1J72 A;  2MV2 A;  1Q8G A;  2VIK A;  3CIP G;  1M2V A;  5KYU A;  1V6F A;  5FAE A;  2LXX A;  5HVK D;  1T44 G;  3EFO B;  3EGD A;  1JHW A; 
#chains in the Genus database with same CATH homology
 1EQY S;  3A5O S;  2FH4 A;  5FAF A;  1PCX A;  2NUP B;  3EGX A;  4JD2 H;  4CBX G;  1RGI G;  1AHQ A;  1WNJ A;  4LIZ A;  2FH2 A;  1HQZ 1;  1CFY A;  2VAC A;  3FFK A;  1F7S A;  1YVN G;  3Q2B A;  3EG9 A;  1T3Y A;  3L50 A;  1COF A;  2L72 A;  3CJB G;  1TMW A;  2NUP A;  1Q8X A;  5KYN A;  4CBW G;  1NLV G;  5KYW A;  4KEE A;  2VIL A;  5IVU A;  1CNU A;  1C0G S;  1KCQ A;  1WFS A;  4PKI G;  3A5M S;  3FG7 A;  1X67 A;  1M2O A;  2NUT B;  4CBU G;  5L6W C;  4Z94 G;  1P8Z G;  3EH2 A;  5KYY B;  1SVY A;  3EFO A;  4BEX 1;  1MDU A;  3CI5 G;  2XF1 A;  1VFQ A;  5KYU B;  1M2V B;  3TU5 B;  1QPV A;  3CJC G;  3A5N S;  2MOT A;  2QTV A;  1T2L A;  1VKK A;  1ESV S;  1UDM A;  1AK6 A;  2LLF A;  3EGD B;  1P8X A;  5A1M A;  1H1V G;  1SVR A;  2NUT A;  4S10 C;  4KED A;  1PD0 A;  1C0F S;  2FF3 A;  2W0I A;  2MP4 A;  1WM4 A;  3DAW B;  1TVJ A;  1D4X G;  2FF6 G;  4KEF A;  3EH1 A;  5KYX B;  3EG9 B;  5HVK B;  1PD1 A;  2FGH A;  3FG6 A;  1T3X A;  2D8B A;  2FH3 A;  1NMD G;  1AK7 A;  2KVK A;  1SVQ A;  2I2Q A;  3FFN A;  2XFA A;  1NPH A;  5KYW B;  2HD7 A;  3A5L S;  1NM1 G;  1DEJ S;  2FH1 A;  3EGX B;  5KYX A;  5KYY A;  1D0N A;  2LJ8 A;  4PKG G;  1YAG G;  5DD2 A;  4PKH B;  1M4J A;  3DA7 A;  1J72 A;  2MV2 A;  1Q8G A;  2VIK A;  3CIP G;  1M2V A;  5KYU A;  1V6F A;  5FAE A;  2LXX A;  5HVK D;  1T44 G;  3EFO B;  3EGD A;  1JHW A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...