5DD2A

Human gelsolin from residues glu28 to arg161 with calcium
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
123
structure length
123
Chain Sequence
EHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Gelsolin 28-161 with Calcium
rcsb
molecule tags Metal binding protein
source organism Homo sapiens
molecule keywords Gelsolin
total genus 34
structure length 123
sequence length 123
chains with identical sequence G
ec nomenclature
pdb deposition date 2015-08-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 5dd2A00
1D4XG 3EH1A 1NLVG 1PD1A 2HD7A 1P8XA 2LJ8A 2XF1A 2NUPA 1NPHA 2NUPB 3EFOA 1QPVA 1WNJA 3A5LS 4KEEA 3EFOB 4PKIG 1T3XA 2FF6G 2FH3A 1JHWA 1YAGG 5KYNA 1YVNG 1T2LA 2VILA 2QTVA 4Z94G 2MV2A 4JD2H 3CIPG 1M2OA 2D8BA 1TMWA 2NUTA 1CFYA 5FAFA 3EG9A 5FAEA 1ESVS 2NUTB 1PCXA 1EQYS 1SVRA 3EG9B 1KCQA 1C0GS 3EGDA 4CBWG 1COFA 1D0NA 2MOTA 3EGDB 3FG7A 2XFAA 4CBUG 1M2VA 1T3YA 4KEDA 1M2VB 3FG6A 1F7SA 2FH2A 3A5NS 1Q8GA 4S10C 5A1MA 1CNUA 5L6WC 3DAWB 1P8ZG 4PKGG 1T44G 5KYYA 1WM4A 1SVQA 5KYYB 2I2QA 1DEJS 1J72A 3EGXA 5HVKB 3Q2BA 1AK6A 1TVJA 3EGXB 1RGIG 1UDMA 4KEFA 1MDUA 5IVUA 1H1VG 2MP4A 1VKKA 1PD0A 1NM1G 2VACA 1HQZ1 1VFQA 3EH2A 3FFNA 3L50A 1M4JA 3CJCG 3CI5G 1AK7A 5KYWA 1V6FA 2FF3A 4PKHB 2FH4A 5KYWB 3TU5B 5KYXA 3A5MS 2LXXA 3FFKA 5KYUA 5KYXB 2FH1A 2L72A 2KVKA 4LIZA 5KYUB 1C0FS 2LLFA 4BEX1 3A5OS 1SVYA 4CBXG 2FGHA 5DD2A 1Q8XA 3CJBG 2W0IA 2VIKA 1WFSA 5HVKD 1NMDG 1X67A 1AHQA
chains in the Genus database with same CATH superfamily
1D4XG 3EH1A 1NLVG 1PD1A 2HD7A 1P8XA 2LJ8A 2XF1A 2NUPA 1NPHA 2NUPB 3EFOA 1QPVA 1WNJA 3A5LS 4KEEA 3EFOB 4PKIG 1T3XA 2FF6G 2FH3A 1JHWA 1YAGG 5KYNA 1YVNG 1T2LA 2VILA 2QTVA 4Z94G 2MV2A 4JD2H 3CIPG 1M2OA 2D8BA 1TMWA 2NUTA 1CFYA 5FAFA 3EG9A 5FAEA 1ESVS 2NUTB 1PCXA 1EQYS 1SVRA 3EG9B 1KCQA 1C0GS 3EGDA 4CBWG 1COFA 1D0NA 2MOTA 3EGDB 3FG7A 2XFAA 4CBUG 1M2VA 1T3YA 4KEDA 1M2VB 3FG6A 1F7SA 2FH2A 3A5NS 1Q8GA 4S10C 5A1MA 1CNUA 5L6WC 3DAWB 1P8ZG 4PKGG 1T44G 5KYYA 1WM4A 1SVQA 5KYYB 2I2QA 1DEJS 1J72A 3EGXA 5HVKB 3Q2BA 1AK6A 1TVJA 3EGXB 1RGIG 1UDMA 4KEFA 1MDUA 5IVUA 1H1VG 3DA7A 2MP4A 1VKKA 1PD0A 1NM1G 2VACA 1HQZ1 1VFQA 3EH2A 3FFNA 3L50A 1M4JA 3CJCG 3CI5G 1AK7A 5KYWA 1V6FA 2FF3A 4PKHB 2FH4A 5KYWB 3TU5B 5KYXA 3A5MS 2LXXA 3FFKA 5KYUA 5KYXB 2FH1A 2L72A 2KVKA 4LIZA 5KYUB 1C0FS 2LLFA 4BEX1 3A5OS 1SVYA 4CBXG 2FGHA 5DD2A 1Q8XA 3CJBG 2W0IA 2VIKA 1WFSA 5HVKD 1NMDG 1X67A 1AHQA
chains in the Genus database with same CATH topology
1D4XG 3EH1A 1NLVG 1PD1A 2HD7A 1P8XA 2LJ8A 2XF1A 2NUPA 1NPHA 2NUPB 3EFOA 1QPVA 1WNJA 3A5LS 4KEEA 3EFOB 4PKIG 1T3XA 2FF6G 2FH3A 1JHWA 1YAGG 5KYNA 1YVNG 1T2LA 2VILA 2QTVA 4Z94G 2MV2A 4JD2H 3CIPG 1M2OA 2D8BA 1TMWA 2NUTA 1CFYA 5FAFA 3EG9A 5FAEA 1ESVS 2NUTB 1PCXA 1EQYS 1SVRA 3EG9B 1KCQA 1C0GS 3EGDA 4CBWG 1COFA 1D0NA 2MOTA 3EGDB 3FG7A 2XFAA 4CBUG 1M2VA 1T3YA 4KEDA 1M2VB 3FG6A 1F7SA 2FH2A 3A5NS 1Q8GA 4S10C 5A1MA 1CNUA 5L6WC 3DAWB 1P8ZG 4PKGG 1T44G 5KYYA 1WM4A 1SVQA 5KYYB 2I2QA 1DEJS 1J72A 3EGXA 5HVKB 3Q2BA 1AK6A 1TVJA 3EGXB 1RGIG 1UDMA 4KEFA 1MDUA 5IVUA 1H1VG 3DA7A 2MP4A 1VKKA 1PD0A 1NM1G 2VACA 1HQZ1 1VFQA 3EH2A 3FFNA 3L50A 1M4JA 3CJCG 3CI5G 1AK7A 5KYWA 1V6FA 2FF3A 4PKHB 2FH4A 5KYWB 3TU5B 5KYXA 3A5MS 2LXXA 3FFKA 5KYUA 5KYXB 2FH1A 2L72A 2KVKA 4LIZA 5KYUB 1C0FS 2LLFA 4BEX1 3A5OS 1SVYA 4CBXG 2FGHA 5DD2A 1Q8XA 3CJBG 2W0IA 2VIKA 1WFSA 5HVKD 1NMDG 1X67A 1AHQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1D4X G;  3EH1 A;  1NLV G;  1PD1 A;  2HD7 A;  1P8X A;  2LJ8 A;  2XF1 A;  2NUP A;  1NPH A;  2NUP B;  3EFO A;  1QPV A;  1WNJ A;  3A5L S;  4KEE A;  3EFO B;  4PKI G;  1T3X A;  2FF6 G;  2FH3 A;  1JHW A;  1YAG G;  5KYN A;  1YVN G;  1T2L A;  2VIL A;  2QTV A;  4Z94 G;  2MV2 A;  4JD2 H;  3CIP G;  1M2O A;  2D8B A;  1TMW A;  2NUT A;  1CFY A;  5FAF A;  3EG9 A;  5FAE A;  1ESV S;  2NUT B;  1PCX A;  1EQY S;  1SVR A;  3EG9 B;  1KCQ A;  1C0G S;  3EGD A;  4CBW G;  1COF A;  1D0N A;  2MOT A;  3EGD B;  3FG7 A;  2XFA A;  4CBU G;  1M2V A;  1T3Y A;  4KED A;  1M2V B;  3FG6 A;  1F7S A;  2FH2 A;  3A5N S;  1Q8G A;  4S10 C;  5A1M A;  1CNU A;  5L6W C;  3DAW B;  1P8Z G;  4PKG G;  1T44 G;  5KYY A;  1WM4 A;  1SVQ A;  5KYY B;  2I2Q A;  1DEJ S;  1J72 A;  3EGX A;  5HVK B;  3Q2B A;  1AK6 A;  1TVJ A;  3EGX B;  1RGI G;  1UDM A;  4KEF A;  1MDU A;  5IVU A;  1H1V G;  2MP4 A;  1VKK A;  1PD0 A;  1NM1 G;  2VAC A;  1HQZ 1;  1VFQ A;  3EH2 A;  3FFN A;  3L50 A;  1M4J A;  3CJC G;  3CI5 G;  1AK7 A;  5KYW A;  1V6F A;  2FF3 A;  4PKH B;  2FH4 A;  5KYW B;  3TU5 B;  5KYX A;  3A5M S;  2LXX A;  3FFK A;  5KYU A;  5KYX B;  2FH1 A;  2L72 A;  2KVK A;  4LIZ A;  5KYU B;  1C0F S;  2LLF A;  4BEX 1;  3A5O S;  1SVY A;  4CBX G;  2FGH A;  5DD2 A;  1Q8X A;  3CJB G;  2W0I A;  2VIK A;  1WFS A;  5HVK D;  1NMD G;  1X67 A;  1AHQ A; 
#chains in the Genus database with same CATH topology
 1D4X G;  3EH1 A;  1NLV G;  1PD1 A;  2HD7 A;  1P8X A;  2LJ8 A;  2XF1 A;  2NUP A;  1NPH A;  2NUP B;  3EFO A;  1QPV A;  1WNJ A;  3A5L S;  4KEE A;  3EFO B;  4PKI G;  1T3X A;  2FF6 G;  2FH3 A;  1JHW A;  1YAG G;  5KYN A;  1YVN G;  1T2L A;  2VIL A;  2QTV A;  4Z94 G;  2MV2 A;  4JD2 H;  3CIP G;  1M2O A;  2D8B A;  1TMW A;  2NUT A;  1CFY A;  5FAF A;  3EG9 A;  5FAE A;  1ESV S;  2NUT B;  1PCX A;  1EQY S;  1SVR A;  3EG9 B;  1KCQ A;  1C0G S;  3EGD A;  4CBW G;  1COF A;  1D0N A;  2MOT A;  3EGD B;  3FG7 A;  2XFA A;  4CBU G;  1M2V A;  1T3Y A;  4KED A;  1M2V B;  3FG6 A;  1F7S A;  2FH2 A;  3A5N S;  1Q8G A;  4S10 C;  5A1M A;  1CNU A;  5L6W C;  3DAW B;  1P8Z G;  4PKG G;  1T44 G;  5KYY A;  1WM4 A;  1SVQ A;  5KYY B;  2I2Q A;  1DEJ S;  1J72 A;  3EGX A;  5HVK B;  3Q2B A;  1AK6 A;  1TVJ A;  3EGX B;  1RGI G;  1UDM A;  4KEF A;  1MDU A;  5IVU A;  1H1V G;  3DA7 A;  2MP4 A;  1VKK A;  1PD0 A;  1NM1 G;  2VAC A;  1HQZ 1;  1VFQ A;  3EH2 A;  3FFN A;  3L50 A;  1M4J A;  3CJC G;  3CI5 G;  1AK7 A;  5KYW A;  1V6F A;  2FF3 A;  4PKH B;  2FH4 A;  5KYW B;  3TU5 B;  5KYX A;  3A5M S;  2LXX A;  3FFK A;  5KYU A;  5KYX B;  2FH1 A;  2L72 A;  2KVK A;  4LIZ A;  5KYU B;  1C0F S;  2LLF A;  4BEX 1;  3A5O S;  1SVY A;  4CBX G;  2FGH A;  5DD2 A;  1Q8X A;  3CJB G;  2W0I A;  2VIK A;  1WFS A;  5HVK D;  1NMD G;  1X67 A;  1AHQ A; 
#chains in the Genus database with same CATH homology
 1D4X G;  3EH1 A;  1NLV G;  1PD1 A;  2HD7 A;  1P8X A;  2LJ8 A;  2XF1 A;  2NUP A;  1NPH A;  2NUP B;  3EFO A;  1QPV A;  1WNJ A;  3A5L S;  4KEE A;  3EFO B;  4PKI G;  1T3X A;  2FF6 G;  2FH3 A;  1JHW A;  1YAG G;  5KYN A;  1YVN G;  1T2L A;  2VIL A;  2QTV A;  4Z94 G;  2MV2 A;  4JD2 H;  3CIP G;  1M2O A;  2D8B A;  1TMW A;  2NUT A;  1CFY A;  5FAF A;  3EG9 A;  5FAE A;  1ESV S;  2NUT B;  1PCX A;  1EQY S;  1SVR A;  3EG9 B;  1KCQ A;  1C0G S;  3EGD A;  4CBW G;  1COF A;  1D0N A;  2MOT A;  3EGD B;  3FG7 A;  2XFA A;  4CBU G;  1M2V A;  1T3Y A;  4KED A;  1M2V B;  3FG6 A;  1F7S A;  2FH2 A;  3A5N S;  1Q8G A;  4S10 C;  5A1M A;  1CNU A;  5L6W C;  3DAW B;  1P8Z G;  4PKG G;  1T44 G;  5KYY A;  1WM4 A;  1SVQ A;  5KYY B;  2I2Q A;  1DEJ S;  1J72 A;  3EGX A;  5HVK B;  3Q2B A;  1AK6 A;  1TVJ A;  3EGX B;  1RGI G;  1UDM A;  4KEF A;  1MDU A;  5IVU A;  1H1V G;  3DA7 A;  2MP4 A;  1VKK A;  1PD0 A;  1NM1 G;  2VAC A;  1HQZ 1;  1VFQ A;  3EH2 A;  3FFN A;  3L50 A;  1M4J A;  3CJC G;  3CI5 G;  1AK7 A;  5KYW A;  1V6F A;  2FF3 A;  4PKH B;  2FH4 A;  5KYW B;  3TU5 B;  5KYX A;  3A5M S;  2LXX A;  3FFK A;  5KYU A;  5KYX B;  2FH1 A;  2L72 A;  2KVK A;  4LIZ A;  5KYU B;  1C0F S;  2LLF A;  4BEX 1;  3A5O S;  1SVY A;  4CBX G;  2FGH A;  5DD2 A;  1Q8X A;  3CJB G;  2W0I A;  2VIK A;  1WFS A;  5HVK D;  1NMD G;  1X67 A;  1AHQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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