5DD2A

Human gelsolin from residues glu28 to arg161 with calcium
Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
123
structure length
123
Chain Sequence
EHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (56-58)EMPTYTIV2 (29-32)TIV1 (28-31)TIV3 (31-34)AH1 (95-112)TIV4 (32-35)TI'2 (112-115)TIV5 (34-37)S1 (40-47)TI1 (63-66)S6 (117-122)S3 (61-63)TII1 (58-61)TIV7 (90-93)TI2 (76-79)S5 (81-89)S2 (50-53)TIV6 (46-49)S4 (67-75)Updating...
connected with : NaN
publication title Gelsolin 28-161 with Calcium
rcsb
molecule keywords Gelsolin
molecule tags Metal binding protein
source organism Homo sapiens
total genus 34
structure length 123
sequence length 123
chains with identical sequence G
ec nomenclature
pdb deposition date 2015-08-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 5dd2A00
1YAGG 4CBXG 1ESVS 5HVKD 1AK7A 1T2LA 1SVRA 2FH1A 1VFQA 1WNJA 1QPVA 5DD2A 5KYUA 1P8XA 5KYXB 1SVYA 1C0FS 3TU5B 3FG6A 5IVUA 1D0NA 4BEX1 5A1MA 1NLVG 3A5OS 1EQYS 1T3XA 2FF3A 1F7SA 3CJCG 1C0GS 5KYYA 1CNUA 4JD2H 1PD0A 2HD7A 3CJBG 1M2OA 1COFA 3EG9B 2VILA 2MP4A 1AHQA 1TMWA 1Q8XA 3EGXB 5KYWA 2MV2A 1PCXA 3EGDB 1P8ZG 1M4JA 1M2VB 1TVJA 1AK6A 2D8BA 3EH1A 2NUPB 1SVQA 5KYNA 2FH2A 1WFSA 5L6WC 4KEEA 4S10C 1V6FA 2LLFA 4PKGG 2XF1A 3EFOA 1JHWA 1VKKA 3A5MS 5FAEA 3L50A 2FH3A 3Q2BA 2NUTB 2FGHA 2VIKA 2XFAA 4KEDA 1J72A 1WM4A 5HVKB 3FG7A 5KYYB 2L72A 1PD1A 1MDUA 2LJ8A 3DAWB 3FFKA 1T3YA 3CIPG 3EH2A 1UDMA 5KYWB 2I2QA 5KYXA 4KEFA 1HQZ1 2KVKA 1T44G 1Q8GA 5KYUB 1NPHA 1KCQA 1X67A 2VACA 3A5NS 4PKHB 3CI5G 3A5LS 2FF6G 4LIZA 1NM1G 3EG9A 1YVNG 1NMDG 3EFOB 2LXXA 4Z94G 3EGXA 1D4XG 2MOTA 2NUTA 4CBUG 1DEJS 2FH4A 1CFYA 3EGDA 2QTVA 4PKIG 1RGIG 1M2VA 5FAFA 1H1VG 2NUPA 4CBWG 3FFNA 2W0IA
chains in the Genus database with same CATH superfamily
1YAGG 4CBXG 1ESVS 5HVKD 1AK7A 1T2LA 1SVRA 2FH1A 1VFQA 1WNJA 1QPVA 5DD2A 5KYUA 1P8XA 5KYXB 1SVYA 1C0FS 3TU5B 3FG6A 5IVUA 1D0NA 4BEX1 5A1MA 1NLVG 3A5OS 1EQYS 1T3XA 2FF3A 1F7SA 3CJCG 1C0GS 5KYYA 1CNUA 4JD2H 1PD0A 2HD7A 3CJBG 1M2OA 1COFA 3EG9B 2VILA 2MP4A 1AHQA 1TMWA 1Q8XA 3EGXB 5KYWA 2MV2A 1PCXA 3EGDB 1P8ZG 1M4JA 1M2VB 1TVJA 1AK6A 2D8BA 3EH1A 2NUPB 1SVQA 5KYNA 3DA7A 2FH2A 1WFSA 5L6WC 4KEEA 4S10C 1V6FA 2LLFA 4PKGG 2XF1A 3EFOA 1JHWA 1VKKA 3A5MS 5FAEA 3L50A 2FH3A 3Q2BA 2NUTB 2FGHA 2VIKA 2XFAA 4KEDA 1J72A 1WM4A 5HVKB 3FG7A 5KYYB 2L72A 1PD1A 1MDUA 2LJ8A 3DAWB 3FFKA 1T3YA 3CIPG 3EH2A 1UDMA 5KYWB 2I2QA 5KYXA 4KEFA 1HQZ1 2KVKA 1T44G 1Q8GA 5KYUB 1NPHA 1KCQA 1X67A 2VACA 3A5NS 4PKHB 3CI5G 3A5LS 2FF6G 4LIZA 1NM1G 3EG9A 1YVNG 1NMDG 3EFOB 2LXXA 4Z94G 3EGXA 1D4XG 2MOTA 2NUTA 4CBUG 1DEJS 2FH4A 1CFYA 3EGDA 2QTVA 4PKIG 1RGIG 1M2VA 5FAFA 1H1VG 2NUPA 4CBWG 3FFNA 2W0IA
chains in the Genus database with same CATH topology
1YAGG 4CBXG 1ESVS 5HVKD 1AK7A 1T2LA 1SVRA 2FH1A 1VFQA 1WNJA 1QPVA 5DD2A 5KYUA 1P8XA 5KYXB 1SVYA 1C0FS 3TU5B 3FG6A 5IVUA 1D0NA 4BEX1 5A1MA 1NLVG 3A5OS 1EQYS 1T3XA 2FF3A 1F7SA 3CJCG 1C0GS 5KYYA 1CNUA 4JD2H 1PD0A 2HD7A 3CJBG 1M2OA 1COFA 3EG9B 2VILA 2MP4A 1AHQA 1TMWA 1Q8XA 3EGXB 5KYWA 2MV2A 1PCXA 3EGDB 1P8ZG 1M4JA 1M2VB 1TVJA 1AK6A 2D8BA 3EH1A 2NUPB 1SVQA 5KYNA 3DA7A 2FH2A 1WFSA 5L6WC 4KEEA 4S10C 1V6FA 2LLFA 4PKGG 2XF1A 3EFOA 1JHWA 1VKKA 3A5MS 5FAEA 3L50A 2FH3A 3Q2BA 2NUTB 2FGHA 2VIKA 2XFAA 4KEDA 1J72A 1WM4A 5HVKB 3FG7A 5KYYB 2L72A 1PD1A 1MDUA 2LJ8A 3DAWB 3FFKA 1T3YA 3CIPG 3EH2A 1UDMA 5KYWB 2I2QA 5KYXA 4KEFA 1HQZ1 2KVKA 1T44G 1Q8GA 5KYUB 1NPHA 1KCQA 1X67A 2VACA 3A5NS 4PKHB 3CI5G 3A5LS 2FF6G 4LIZA 1NM1G 3EG9A 1YVNG 1NMDG 3EFOB 2LXXA 4Z94G 3EGXA 1D4XG 2MOTA 2NUTA 4CBUG 1DEJS 2FH4A 1CFYA 3EGDA 2QTVA 4PKIG 1RGIG 1M2VA 5FAFA 1H1VG 2NUPA 4CBWG 3FFNA 2W0IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YAG G;  4CBX G;  1ESV S;  5HVK D;  1AK7 A;  1T2L A;  1SVR A;  2FH1 A;  1VFQ A;  1WNJ A;  1QPV A;  5DD2 A;  5KYU A;  1P8X A;  5KYX B;  1SVY A;  1C0F S;  3TU5 B;  3FG6 A;  5IVU A;  1D0N A;  4BEX 1;  5A1M A;  1NLV G;  3A5O S;  1EQY S;  1T3X A;  2FF3 A;  1F7S A;  3CJC G;  1C0G S;  5KYY A;  1CNU A;  4JD2 H;  1PD0 A;  2HD7 A;  3CJB G;  1M2O A;  1COF A;  3EG9 B;  2VIL A;  2MP4 A;  1AHQ A;  1TMW A;  1Q8X A;  3EGX B;  5KYW A;  2MV2 A;  1PCX A;  3EGD B;  1P8Z G;  1M4J A;  1M2V B;  1TVJ A;  1AK6 A;  2D8B A;  3EH1 A;  2NUP B;  1SVQ A;  5KYN A;  2FH2 A;  1WFS A;  5L6W C;  4KEE A;  4S10 C;  1V6F A;  2LLF A;  4PKG G;  2XF1 A;  3EFO A;  1JHW A;  1VKK A;  3A5M S;  5FAE A;  3L50 A;  2FH3 A;  3Q2B A;  2NUT B;  2FGH A;  2VIK A;  2XFA A;  4KED A;  1J72 A;  1WM4 A;  5HVK B;  3FG7 A;  5KYY B;  2L72 A;  1PD1 A;  1MDU A;  2LJ8 A;  3DAW B;  3FFK A;  1T3Y A;  3CIP G;  3EH2 A;  1UDM A;  5KYW B;  2I2Q A;  5KYX A;  4KEF A;  1HQZ 1;  2KVK A;  1T44 G;  1Q8G A;  5KYU B;  1NPH A;  1KCQ A;  1X67 A;  2VAC A;  3A5N S;  4PKH B;  3CI5 G;  3A5L S;  2FF6 G;  4LIZ A;  1NM1 G;  3EG9 A;  1YVN G;  1NMD G;  3EFO B;  2LXX A;  4Z94 G;  3EGX A;  1D4X G;  2MOT A;  2NUT A;  4CBU G;  1DEJ S;  2FH4 A;  1CFY A;  3EGD A;  2QTV A;  4PKI G;  1RGI G;  1M2V A;  5FAF A;  1H1V G;  2NUP A;  4CBW G;  3FFN A;  2W0I A; 
#chains in the Genus database with same CATH topology
 1YAG G;  4CBX G;  1ESV S;  5HVK D;  1AK7 A;  1T2L A;  1SVR A;  2FH1 A;  1VFQ A;  1WNJ A;  1QPV A;  5DD2 A;  5KYU A;  1P8X A;  5KYX B;  1SVY A;  1C0F S;  3TU5 B;  3FG6 A;  5IVU A;  1D0N A;  4BEX 1;  5A1M A;  1NLV G;  3A5O S;  1EQY S;  1T3X A;  2FF3 A;  1F7S A;  3CJC G;  1C0G S;  5KYY A;  1CNU A;  4JD2 H;  1PD0 A;  2HD7 A;  3CJB G;  1M2O A;  1COF A;  3EG9 B;  2VIL A;  2MP4 A;  1AHQ A;  1TMW A;  1Q8X A;  3EGX B;  5KYW A;  2MV2 A;  1PCX A;  3EGD B;  1P8Z G;  1M4J A;  1M2V B;  1TVJ A;  1AK6 A;  2D8B A;  3EH1 A;  2NUP B;  1SVQ A;  5KYN A;  3DA7 A;  2FH2 A;  1WFS A;  5L6W C;  4KEE A;  4S10 C;  1V6F A;  2LLF A;  4PKG G;  2XF1 A;  3EFO A;  1JHW A;  1VKK A;  3A5M S;  5FAE A;  3L50 A;  2FH3 A;  3Q2B A;  2NUT B;  2FGH A;  2VIK A;  2XFA A;  4KED A;  1J72 A;  1WM4 A;  5HVK B;  3FG7 A;  5KYY B;  2L72 A;  1PD1 A;  1MDU A;  2LJ8 A;  3DAW B;  3FFK A;  1T3Y A;  3CIP G;  3EH2 A;  1UDM A;  5KYW B;  2I2Q A;  5KYX A;  4KEF A;  1HQZ 1;  2KVK A;  1T44 G;  1Q8G A;  5KYU B;  1NPH A;  1KCQ A;  1X67 A;  2VAC A;  3A5N S;  4PKH B;  3CI5 G;  3A5L S;  2FF6 G;  4LIZ A;  1NM1 G;  3EG9 A;  1YVN G;  1NMD G;  3EFO B;  2LXX A;  4Z94 G;  3EGX A;  1D4X G;  2MOT A;  2NUT A;  4CBU G;  1DEJ S;  2FH4 A;  1CFY A;  3EGD A;  2QTV A;  4PKI G;  1RGI G;  1M2V A;  5FAF A;  1H1V G;  2NUP A;  4CBW G;  3FFN A;  2W0I A; 
#chains in the Genus database with same CATH homology
 1YAG G;  4CBX G;  1ESV S;  5HVK D;  1AK7 A;  1T2L A;  1SVR A;  2FH1 A;  1VFQ A;  1WNJ A;  1QPV A;  5DD2 A;  5KYU A;  1P8X A;  5KYX B;  1SVY A;  1C0F S;  3TU5 B;  3FG6 A;  5IVU A;  1D0N A;  4BEX 1;  5A1M A;  1NLV G;  3A5O S;  1EQY S;  1T3X A;  2FF3 A;  1F7S A;  3CJC G;  1C0G S;  5KYY A;  1CNU A;  4JD2 H;  1PD0 A;  2HD7 A;  3CJB G;  1M2O A;  1COF A;  3EG9 B;  2VIL A;  2MP4 A;  1AHQ A;  1TMW A;  1Q8X A;  3EGX B;  5KYW A;  2MV2 A;  1PCX A;  3EGD B;  1P8Z G;  1M4J A;  1M2V B;  1TVJ A;  1AK6 A;  2D8B A;  3EH1 A;  2NUP B;  1SVQ A;  5KYN A;  3DA7 A;  2FH2 A;  1WFS A;  5L6W C;  4KEE A;  4S10 C;  1V6F A;  2LLF A;  4PKG G;  2XF1 A;  3EFO A;  1JHW A;  1VKK A;  3A5M S;  5FAE A;  3L50 A;  2FH3 A;  3Q2B A;  2NUT B;  2FGH A;  2VIK A;  2XFA A;  4KED A;  1J72 A;  1WM4 A;  5HVK B;  3FG7 A;  5KYY B;  2L72 A;  1PD1 A;  1MDU A;  2LJ8 A;  3DAW B;  3FFK A;  1T3Y A;  3CIP G;  3EH2 A;  1UDM A;  5KYW B;  2I2Q A;  5KYX A;  4KEF A;  1HQZ 1;  2KVK A;  1T44 G;  1Q8G A;  5KYU B;  1NPH A;  1KCQ A;  1X67 A;  2VAC A;  3A5N S;  4PKH B;  3CI5 G;  3A5L S;  2FF6 G;  4LIZ A;  1NM1 G;  3EG9 A;  1YVN G;  1NMD G;  3EFO B;  2LXX A;  4Z94 G;  3EGX A;  1D4X G;  2MOT A;  2NUT A;  4CBU G;  1DEJ S;  2FH4 A;  1CFY A;  3EGD A;  2QTV A;  4PKI G;  1RGI G;  1M2V A;  5FAF A;  1H1V G;  2NUP A;  4CBW G;  3FFN A;  2W0I A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.