1FIBA

Recombinant human gamma-fibrinogen carboxyl terminal fragment (residues 143-411) bound to calcium at ph 6.0
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
249
structure length
249
Chain Sequence
QIHDITGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDNDKFEGNCAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWKTRWYSMKKTTMKIIPFNRL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Blood coagulation factor
source organism Homo sapiens
publication title Crystal structure of a 30 kDa C-terminal fragment from the gamma chain of human fibrinogen.
pubmed doi rcsb
molecule keywords GAMMA-FIBRINOGEN CARBOXYL TERMINAL FRAGMENT
total genus 79
structure length 249
sequence length 249
ec nomenclature
pdb deposition date 1996-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 1fibA01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 1fibA02
1RF1C 2J2PA 1FICA 1RE4C 4R9TA 4JYOX 1Z3UA 2J61A 1LT9C 2FIBA 1LWUC 1N86B 2HODC 3BVHB 2Q9IC 2H43C 2J1GA 1FZCB 2HLOB 4EPUA 2JHIF 2J0GA 1RE3C 3FIBA 2JHKF 4R9JA 2J0YA 1N73C 2JHHC 1RF1B 2J64A 1RE4B 1FZAC 1FZEC 4M7HA 2XNXC 1FZGC 3E1IC 1FZGB 1LT9B 1LWUB 2HODB 1FZFC 1FZDA 2Z4EC 2Q9IB 2H43B 1Z3SA 2J3OA 3GHGC 3HUSC 1RF0C 2HPCC 2OYIC 2WNPF 2OYHC 1RE3B 1N73B 4NYTA 1M1JC 2J3FA 2J3UA 2FFDC 3H32C 1FZAB 1FZEB 2XNXB 2D39A 3E1IB 4ZFGA 4JZCA 1FZBC 1JC9A 1FZFB 2Z4EB 2J5ZA 3HUSB 4M7FA 1RF0B 2J60A 2HPCB 2GY7A 2OYIB 1N86C 2OYHB 2J3FD 3BVHC 1LTJC 1M1JB 1FZCC 2HLOC 1LTJB 2JHLF 1FIDA 2FFDB 3H32B 2J3GA 1FZBB 2J61B 1FIBA 2J0HA 2JHMF
chains in the Genus database with same CATH superfamily
1RF1C 2J2PA 1FICA 1RE4C 4R9TA 4JYOX 1Z3UA 2J61A 1LT9C 2FIBA 1LWUC 1N86B 2HODC 3BVHB 2Q9IC 2H43C 2J1GA 1FZCB 2HLOB 4EPUA 2JHIF 2J0GA 1RE3C 3FIBA 2JHKF 4R9JA 2J0YA 1N73C 2JHHC 1RF1B 2J64A 1RE4B 1FZAC 1FZEC 4M7HA 2XNXC 1FZGC 3E1IC 1FZGB 1LT9B 1LWUB 2HODB 1FZFC 1FZDA 2Z4EC 2Q9IB 2H43B 1Z3SA 2J3OA 3GHGC 3HUSC 1RF0C 2HPCC 2OYIC 2WNPF 2OYHC 1RE3B 1N73B 4NYTA 1M1JC 2J3FA 2J3UA 2FFDC 3H32C 1FZAB 1FZEB 2XNXB 2D39A 3E1IB 4ZFGA 4JZCA 1FZBC 1JC9A 1FZFB 2Z4EB 2J5ZA 3GHGB 3HUSB 4M7FA 1RF0B 2J60A 2HPCB 2GY7A 2OYIB 1N86C 2OYHB 2J3FD 3BVHC 1LTJC 1M1JB 1FZCC 2HLOC 1LTJB 2JHLF 1FIDA 2FFDB 3H32B 2J3GA 1FZBB 2J61B 1FIBA 2J0HA 2JHMF
chains in the Genus database with same CATH topology
1RF1C 2J2PA 1FICA 1RE4C 4R9TA 4JYOX 1Z3UA 2J61A 1LT9C 2FIBA 1LWUC 1N86B 2HODC 3BVHB 2Q9IC 2H43C 2J1GA 1FZCB 2HLOB 4EPUA 2JHIF 2J0GA 1RE3C 3FIBA 2JHKF 4R9JA 2J0YA 1N73C 2JHHC 1RF1B 2J64A 1RE4B 1FZAC 1FZEC 4M7HA 2XNXC 1FZGC 3E1IC 1FZGB 1LT9B 1LWUB 2HODB 1FZFC 1FZDA 2Z4EC 2Q9IB 2H43B 1Z3SA 2J3OA 3GHGC 3HUSC 1RF0C 2HPCC 2OYIC 2WNPF 2OYHC 1RE3B 1N73B 4NYTA 1M1JC 2J3FA 2J3UA 2FFDC 3H32C 1FZAB 1FZEB 2XNXB 2D39A 3E1IB 4ZFGA 4JZCA 1FZBC 1JC9A 1FZFB 2Z4EB 2J5ZA 3HUSB 4M7FA 1RF0B 2J60A 2HPCB 2GY7A 2OYIB 1N86C 2OYHB 2J3FD 3BVHC 1LTJC 1M1JB 1FZCC 2HLOC 1LTJB 2JHLF 1FIDA 2FFDB 3H32B 2J3GA 1FZBB 2J61B 1FIBA 2J0HA 2JHMF
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RF1 C;  2J2P A;  1FIC A;  1RE4 C;  4R9T A;  4JYO X;  1Z3U A;  2J61 A;  1LT9 C;  2FIB A;  1LWU C;  1N86 B;  2HOD C;  3BVH B;  2Q9I C;  2H43 C;  2J1G A;  1FZC B;  2HLO B;  4EPU A;  2JHI F;  2J0G A;  1RE3 C;  3FIB A;  2JHK F;  4R9J A;  2J0Y A;  1N73 C;  2JHH C;  1RF1 B;  2J64 A;  1RE4 B;  1FZA C;  1FZE C;  4M7H A;  2XNX C;  1FZG C;  3E1I C;  1FZG B;  1LT9 B;  1LWU B;  2HOD B;  1FZF C;  1FZD A;  2Z4E C;  2Q9I B;  2H43 B;  1Z3S A;  2J3O A;  3GHG C;  3HUS C;  1RF0 C;  2HPC C;  2OYI C;  2WNP F;  2OYH C;  1RE3 B;  1N73 B;  4NYT A;  1M1J C;  2J3F A;  2J3U A;  2FFD C;  3H32 C;  1FZA B;  1FZE B;  2XNX B;  2D39 A;  3E1I B;  4ZFG A;  4JZC A;  1FZB C;  1JC9 A;  1FZF B;  2Z4E B;  2J5Z A;  3HUS B;  4M7F A;  1RF0 B;  2J60 A;  2HPC B;  2GY7 A;  2OYI B;  1N86 C;  2OYH B;  2J3F D;  3BVH C;  1LTJ C;  1M1J B;  1FZC C;  2HLO C;  1LTJ B;  2JHL F;  1FID A;  2FFD B;  3H32 B;  2J3G A;  1FZB B;  2J61 B;  1FIB A;  2J0H A;  2JHM F; 
#chains in the Genus database with same CATH topology
 1RF1 C;  2J2P A;  1FIC A;  1RE4 C;  4R9T A;  4JYO X;  1Z3U A;  2J61 A;  1LT9 C;  2FIB A;  1LWU C;  1N86 B;  2HOD C;  3BVH B;  2Q9I C;  2H43 C;  2J1G A;  1FZC B;  2HLO B;  4EPU A;  2JHI F;  2J0G A;  1RE3 C;  3FIB A;  2JHK F;  4R9J A;  2J0Y A;  1N73 C;  2JHH C;  1RF1 B;  2J64 A;  1RE4 B;  1FZA C;  1FZE C;  4M7H A;  2XNX C;  1FZG C;  3E1I C;  1FZG B;  1LT9 B;  1LWU B;  2HOD B;  1FZF C;  1FZD A;  2Z4E C;  2Q9I B;  2H43 B;  1Z3S A;  2J3O A;  3GHG C;  3HUS C;  1RF0 C;  2HPC C;  2OYI C;  2WNP F;  2OYH C;  1RE3 B;  1N73 B;  4NYT A;  1M1J C;  2J3F A;  2J3U A;  2FFD C;  3H32 C;  1FZA B;  1FZE B;  2XNX B;  2D39 A;  3E1I B;  4ZFG A;  4JZC A;  1FZB C;  1JC9 A;  1FZF B;  2Z4E B;  2J5Z A;  3GHG B;  3HUS B;  4M7F A;  1RF0 B;  2J60 A;  2HPC B;  2GY7 A;  2OYI B;  1N86 C;  2OYH B;  2J3F D;  3BVH C;  1LTJ C;  1M1J B;  1FZC C;  2HLO C;  1LTJ B;  2JHL F;  1FID A;  2FFD B;  3H32 B;  2J3G A;  1FZB B;  2J61 B;  1FIB A;  2J0H A;  2JHM F; 
#chains in the Genus database with same CATH homology
 1RF1 C;  2J2P A;  1FIC A;  1RE4 C;  4R9T A;  4JYO X;  1Z3U A;  2J61 A;  1LT9 C;  2FIB A;  1LWU C;  1N86 B;  2HOD C;  3BVH B;  2Q9I C;  2H43 C;  2J1G A;  1FZC B;  2HLO B;  4EPU A;  2JHI F;  2J0G A;  1RE3 C;  3FIB A;  2JHK F;  4R9J A;  2J0Y A;  1N73 C;  2JHH C;  1RF1 B;  2J64 A;  1RE4 B;  1FZA C;  1FZE C;  4M7H A;  2XNX C;  1FZG C;  3E1I C;  1FZG B;  1LT9 B;  1LWU B;  2HOD B;  1FZF C;  1FZD A;  2Z4E C;  2Q9I B;  2H43 B;  1Z3S A;  2J3O A;  3GHG C;  3HUS C;  1RF0 C;  2HPC C;  2OYI C;  2WNP F;  2OYH C;  1RE3 B;  1N73 B;  4NYT A;  1M1J C;  2J3F A;  2J3U A;  2FFD C;  3H32 C;  1FZA B;  1FZE B;  2XNX B;  2D39 A;  3E1I B;  4ZFG A;  4JZC A;  1FZB C;  1JC9 A;  1FZF B;  2Z4E B;  2J5Z A;  3HUS B;  4M7F A;  1RF0 B;  2J60 A;  2HPC B;  2GY7 A;  2OYI B;  1N86 C;  2OYH B;  2J3F D;  3BVH C;  1LTJ C;  1M1J B;  1FZC C;  2HLO C;  1LTJ B;  2JHL F;  1FID A;  2FFD B;  3H32 B;  2J3G A;  1FZB B;  2J61 B;  1FIB A;  2J0H A;  2JHM F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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