1FZGB

Crystal structure of fragment d from human fibrinogen with the peptide ligand gly-his-arg-pro-amide
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
303
structure length
303
Chain Sequence
VNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRTPCTVSCNIPVVSGKECEEIIRKGGETSEMYLIQPDSSVKPYRVYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYCGLPGEYWLGNDKISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGASQLMGENRTMTIHNGMFFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGGQYTWDMAKHGTDDGVVWMNWKGSWYSMRKMSMKIRPFFP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Conformational changes in fragments D and double-D from human fibrin(ogen) upon binding the peptide ligand Gly-His-Arg-Pro-amide.
pubmed doi rcsb
molecule tags Blood coagulation
molecule keywords FIBRINOGEN
total genus 92
structure length 303
sequence length 303
chains with identical sequence E
ec nomenclature
pdb deposition date 1999-01-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 1fzgB01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 1fzgB02
1JC9A 1FIDA 1FZFC 2OYIC 1FZGB 1FZCC 4JYOX 1FICA 3E1IC 2OYHB 2J60A 2D39A 1FZFB 2J3FD 1FIBA 2OYIB 1FZCB 1RF0C 2J0YA 3E1IB 2H43C 2HPCB 4M7HA 1LTJC 2JHMF 1RF1C 1RF0B 2J61A 2Z4EC 1Z3UA 2J61B 2J3OA 3H32C 4M7FA 2FIBA 1FZAC 1LTJB 1FZEC 1M1JC 2HLOC 1N86C 2J3GA 1FZBC 1FZAB 2Q9IC 1FZEB 2HLOB 2GY7A 2J0GA 1FZDA 1N86B 1FZBB 2FFDC 2JHIF 4ZFGA 2Q9IB 2H43B 3BVHC 4NYTA 1LT9C 2JHKF 2J5ZA 2FFDB 1RF1B 1Z3SA 2Z4EB 3BVHB 3HUSC 2J3UA 4R9TA 3H32B 1LT9B 2J3FA 2WNPF 1LWUC 1M1JB 2J0HA 1RE3C 1RE4C 3HUSB 2JHLF 2XNXC 1LWUB 2HPCC 2JHHC 1RE3B 2HODC 1RE4B 2XNXB 2J2PA 4R9JA 3GHGC 4EPUA 1N73C 4JZCA 2HODB 1FZGC 3FIBA 2J1GA 2OYHC 1N73B 2J64A
chains in the Genus database with same CATH superfamily
1JC9A 1FIDA 1FZFC 2OYIC 1FZGB 1FZCC 4JYOX 1FICA 3E1IC 2OYHB 2J60A 2D39A 1FZFB 2J3FD 1FIBA 2OYIB 1FZCB 1RF0C 2J0YA 3E1IB 2H43C 2HPCB 4M7HA 1LTJC 2JHMF 1RF1C 1RF0B 2J61A 2Z4EC 1Z3UA 2J61B 2J3OA 3H32C 4M7FA 2FIBA 1FZAC 1LTJB 1FZEC 1M1JC 2HLOC 1N86C 2J3GA 1FZBC 1FZAB 2Q9IC 1FZEB 2HLOB 2GY7A 2J0GA 1FZDA 1N86B 1FZBB 2FFDC 2JHIF 4ZFGA 2Q9IB 2H43B 3BVHC 4NYTA 1LT9C 2JHKF 2J5ZA 2FFDB 1RF1B 1Z3SA 2Z4EB 3BVHB 3HUSC 2J3UA 4R9TA 3H32B 1LT9B 2J3FA 2WNPF 1LWUC 1M1JB 2J0HA 1RE3C 1RE4C 3HUSB 2JHLF 2XNXC 1LWUB 2HPCC 2JHHC 1RE3B 2HODC 1RE4B 2XNXB 2J2PA 4R9JA 3GHGC 4EPUA 1N73C 4JZCA 2HODB 1FZGC 3FIBA 2J1GA 2OYHC 3GHGB 1N73B 2J64A
chains in the Genus database with same CATH topology
1JC9A 1FIDA 1FZFC 2OYIC 1FZGB 1FZCC 4JYOX 1FICA 3E1IC 2OYHB 2J60A 2D39A 1FZFB 2J3FD 1FIBA 2OYIB 1FZCB 1RF0C 2J0YA 3E1IB 2H43C 2HPCB 4M7HA 1LTJC 2JHMF 1RF1C 1RF0B 2J61A 2Z4EC 1Z3UA 2J61B 2J3OA 3H32C 4M7FA 2FIBA 1FZAC 1LTJB 1FZEC 1M1JC 2HLOC 1N86C 2J3GA 1FZBC 1FZAB 2Q9IC 1FZEB 2HLOB 2GY7A 2J0GA 1FZDA 1N86B 1FZBB 2FFDC 2JHIF 4ZFGA 2Q9IB 2H43B 3BVHC 4NYTA 1LT9C 2JHKF 2J5ZA 2FFDB 1RF1B 1Z3SA 2Z4EB 3BVHB 3HUSC 2J3UA 4R9TA 3H32B 1LT9B 2J3FA 2WNPF 1LWUC 1M1JB 2J0HA 1RE3C 1RE4C 3HUSB 2JHLF 2XNXC 1LWUB 2HPCC 2JHHC 1RE3B 2HODC 1RE4B 2XNXB 2J2PA 4R9JA 3GHGC 4EPUA 1N73C 4JZCA 2HODB 1FZGC 3FIBA 2J1GA 2OYHC 1N73B 2J64A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JC9 A;  1FID A;  1FZF C;  2OYI C;  1FZG B;  1FZC C;  4JYO X;  1FIC A;  3E1I C;  2OYH B;  2J60 A;  2D39 A;  1FZF B;  2J3F D;  1FIB A;  2OYI B;  1FZC B;  1RF0 C;  2J0Y A;  3E1I B;  2H43 C;  2HPC B;  4M7H A;  1LTJ C;  2JHM F;  1RF1 C;  1RF0 B;  2J61 A;  2Z4E C;  1Z3U A;  2J61 B;  2J3O A;  3H32 C;  4M7F A;  2FIB A;  1FZA C;  1LTJ B;  1FZE C;  1M1J C;  2HLO C;  1N86 C;  2J3G A;  1FZB C;  1FZA B;  2Q9I C;  1FZE B;  2HLO B;  2GY7 A;  2J0G A;  1FZD A;  1N86 B;  1FZB B;  2FFD C;  2JHI F;  4ZFG A;  2Q9I B;  2H43 B;  3BVH C;  4NYT A;  1LT9 C;  2JHK F;  2J5Z A;  2FFD B;  1RF1 B;  1Z3S A;  2Z4E B;  3BVH B;  3HUS C;  2J3U A;  4R9T A;  3H32 B;  1LT9 B;  2J3F A;  2WNP F;  1LWU C;  1M1J B;  2J0H A;  1RE3 C;  1RE4 C;  3HUS B;  2JHL F;  2XNX C;  1LWU B;  2HPC C;  2JHH C;  1RE3 B;  2HOD C;  1RE4 B;  2XNX B;  2J2P A;  4R9J A;  3GHG C;  4EPU A;  1N73 C;  4JZC A;  2HOD B;  1FZG C;  3FIB A;  2J1G A;  2OYH C;  1N73 B;  2J64 A; 
#chains in the Genus database with same CATH topology
 1JC9 A;  1FID A;  1FZF C;  2OYI C;  1FZG B;  1FZC C;  4JYO X;  1FIC A;  3E1I C;  2OYH B;  2J60 A;  2D39 A;  1FZF B;  2J3F D;  1FIB A;  2OYI B;  1FZC B;  1RF0 C;  2J0Y A;  3E1I B;  2H43 C;  2HPC B;  4M7H A;  1LTJ C;  2JHM F;  1RF1 C;  1RF0 B;  2J61 A;  2Z4E C;  1Z3U A;  2J61 B;  2J3O A;  3H32 C;  4M7F A;  2FIB A;  1FZA C;  1LTJ B;  1FZE C;  1M1J C;  2HLO C;  1N86 C;  2J3G A;  1FZB C;  1FZA B;  2Q9I C;  1FZE B;  2HLO B;  2GY7 A;  2J0G A;  1FZD A;  1N86 B;  1FZB B;  2FFD C;  2JHI F;  4ZFG A;  2Q9I B;  2H43 B;  3BVH C;  4NYT A;  1LT9 C;  2JHK F;  2J5Z A;  2FFD B;  1RF1 B;  1Z3S A;  2Z4E B;  3BVH B;  3HUS C;  2J3U A;  4R9T A;  3H32 B;  1LT9 B;  2J3F A;  2WNP F;  1LWU C;  1M1J B;  2J0H A;  1RE3 C;  1RE4 C;  3HUS B;  2JHL F;  2XNX C;  1LWU B;  2HPC C;  2JHH C;  1RE3 B;  2HOD C;  1RE4 B;  2XNX B;  2J2P A;  4R9J A;  3GHG C;  4EPU A;  1N73 C;  4JZC A;  2HOD B;  1FZG C;  3FIB A;  2J1G A;  2OYH C;  3GHG B;  1N73 B;  2J64 A; 
#chains in the Genus database with same CATH homology
 1JC9 A;  1FID A;  1FZF C;  2OYI C;  1FZG B;  1FZC C;  4JYO X;  1FIC A;  3E1I C;  2OYH B;  2J60 A;  2D39 A;  1FZF B;  2J3F D;  1FIB A;  2OYI B;  1FZC B;  1RF0 C;  2J0Y A;  3E1I B;  2H43 C;  2HPC B;  4M7H A;  1LTJ C;  2JHM F;  1RF1 C;  1RF0 B;  2J61 A;  2Z4E C;  1Z3U A;  2J61 B;  2J3O A;  3H32 C;  4M7F A;  2FIB A;  1FZA C;  1LTJ B;  1FZE C;  1M1J C;  2HLO C;  1N86 C;  2J3G A;  1FZB C;  1FZA B;  2Q9I C;  1FZE B;  2HLO B;  2GY7 A;  2J0G A;  1FZD A;  1N86 B;  1FZB B;  2FFD C;  2JHI F;  4ZFG A;  2Q9I B;  2H43 B;  3BVH C;  4NYT A;  1LT9 C;  2JHK F;  2J5Z A;  2FFD B;  1RF1 B;  1Z3S A;  2Z4E B;  3BVH B;  3HUS C;  2J3U A;  4R9T A;  3H32 B;  1LT9 B;  2J3F A;  2WNP F;  1LWU C;  1M1J B;  2J0H A;  1RE3 C;  1RE4 C;  3HUS B;  2JHL F;  2XNX C;  1LWU B;  2HPC C;  2JHH C;  1RE3 B;  2HOD C;  1RE4 B;  2XNX B;  2J2P A;  4R9J A;  3GHG C;  4EPU A;  1N73 C;  4JZC A;  2HOD B;  1FZG C;  3FIB A;  2J1G A;  2OYH C;  1N73 B;  2J64 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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