3BVHB

Crystal structure of recombinant gammad364a fibrinogen fragment d with the peptide ligand gly-pro-arg-pro-amide
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
298
structure length
298
Chain Sequence
IPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRTPCTVSCNIPVVSGKECEEIIRKGGETSEMYLIQPDSSVKPYRVYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYCGLPGEYWLGNDKISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGASQLMGENRTMTIHNGMFFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGGQYTWDMAKHGTDDGVVWMNWKGSWYSMRKMSMKIRPFF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Blood clotting
source organism Homo sapiens
publication title Polymerization-defective fibrinogen variant gammaD364A binds knob "A" peptide mimic.
pubmed doi rcsb
molecule keywords Fibrinogen alpha chain
total genus 93
structure length 298
sequence length 298
chains with identical sequence E
ec nomenclature
pdb deposition date 2008-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 3bvhB01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 3bvhB02
3FIBA 1RF0C 1RE3C 2Z4EB 2HODC 1FZCC 1FZCB 2JHMF 1RF1B 2OYHC 2HPCC 1LWUB 3E1IC 1N73B 3GHGC 2D39A 1FIDA 1M1JC 2JHHC 3BVHB 2J0GA 1FZAB 1RE4B 2XNXB 2Z4EC 2Q9IB 1JC9A 2OYIC 2FFDB 2OYIB 1RF1C 1FZBC 1LWUC 2J2PA 1FZBB 3H32B 1N73C 2WNPF 2J1GA 2J61B 2J61A 2J3GA 3BVHC 1FZEB 1FZAC 4EPUA 4M7HA 4JYOX 1Z3SA 1RE4C 2XNXC 2J3FA 1LT9B 2J3UA 2Q9IC 2JHIF 2FFDC 1Z3UA 2J0HA 4M7FA 2HLOB 3H32C 1FZGB 2J0YA 1LTJB 2J64A 1FZEC 1FZDA 2J5ZA 2GY7A 1RF0B 1RE3B 1LT9C 1FIBA 2HODB 4ZFGA 4R9TA 1FZFC 1FZFB 2FIBA 2OYHB 2JHLF 2H43C 2HPCB 2HLOC 2H43B 3E1IB 3HUSC 2J60A 4NYTA 3HUSB 1FZGC 1LTJC 1FICA 1N86C 2J3OA 1M1JB 1N86B 2J3FD 2JHKF 4R9JA 4JZCA
chains in the Genus database with same CATH superfamily
3FIBA 1RF0C 1RE3C 2Z4EB 2HODC 1FZCC 1FZCB 2JHMF 1RF1B 2OYHC 2HPCC 1LWUB 3E1IC 1N73B 3GHGC 2D39A 1FIDA 1M1JC 2JHHC 3BVHB 2J0GA 1FZAB 1RE4B 2XNXB 2Z4EC 2Q9IB 1JC9A 2OYIC 2FFDB 2OYIB 1RF1C 1FZBC 1LWUC 2J2PA 1FZBB 3H32B 1N73C 2WNPF 2J1GA 2J61B 2J61A 2J3GA 3BVHC 1FZEB 1FZAC 4EPUA 4M7HA 4JYOX 1Z3SA 1RE4C 2XNXC 2J3FA 1LT9B 2J3UA 2Q9IC 2JHIF 2FFDC 1Z3UA 2J0HA 4M7FA 2HLOB 3H32C 1FZGB 2J0YA 1LTJB 2J64A 1FZEC 1FZDA 2J5ZA 2GY7A 1RF0B 1RE3B 1LT9C 1FIBA 2HODB 4ZFGA 4R9TA 1FZFC 1FZFB 2FIBA 2OYHB 2JHLF 2H43C 2HPCB 2HLOC 2H43B 3E1IB 3HUSC 2J60A 4NYTA 3HUSB 1FZGC 3GHGB 1LTJC 1FICA 1N86C 2J3OA 1M1JB 1N86B 2J3FD 2JHKF 4R9JA 4JZCA
chains in the Genus database with same CATH topology
3FIBA 1RF0C 1RE3C 2Z4EB 2HODC 1FZCC 1FZCB 2JHMF 1RF1B 2OYHC 2HPCC 1LWUB 3E1IC 1N73B 3GHGC 2D39A 1FIDA 1M1JC 2JHHC 3BVHB 2J0GA 1FZAB 1RE4B 2XNXB 2Z4EC 2Q9IB 1JC9A 2OYIC 2FFDB 2OYIB 1RF1C 1FZBC 1LWUC 2J2PA 1FZBB 3H32B 1N73C 2WNPF 2J1GA 2J61B 2J61A 2J3GA 3BVHC 1FZEB 1FZAC 4EPUA 4M7HA 4JYOX 1Z3SA 1RE4C 2XNXC 2J3FA 1LT9B 2J3UA 2Q9IC 2JHIF 2FFDC 1Z3UA 2J0HA 4M7FA 2HLOB 3H32C 1FZGB 2J0YA 1LTJB 2J64A 1FZEC 1FZDA 2J5ZA 2GY7A 1RF0B 1RE3B 1LT9C 1FIBA 2HODB 4ZFGA 4R9TA 1FZFC 1FZFB 2FIBA 2OYHB 2JHLF 2H43C 2HPCB 2HLOC 2H43B 3E1IB 3HUSC 2J60A 4NYTA 3HUSB 1FZGC 1LTJC 1FICA 1N86C 2J3OA 1M1JB 1N86B 2J3FD 2JHKF 4R9JA 4JZCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FIB A;  1RF0 C;  1RE3 C;  2Z4E B;  2HOD C;  1FZC C;  1FZC B;  2JHM F;  1RF1 B;  2OYH C;  2HPC C;  1LWU B;  3E1I C;  1N73 B;  3GHG C;  2D39 A;  1FID A;  1M1J C;  2JHH C;  3BVH B;  2J0G A;  1FZA B;  1RE4 B;  2XNX B;  2Z4E C;  2Q9I B;  1JC9 A;  2OYI C;  2FFD B;  2OYI B;  1RF1 C;  1FZB C;  1LWU C;  2J2P A;  1FZB B;  3H32 B;  1N73 C;  2WNP F;  2J1G A;  2J61 B;  2J61 A;  2J3G A;  3BVH C;  1FZE B;  1FZA C;  4EPU A;  4M7H A;  4JYO X;  1Z3S A;  1RE4 C;  2XNX C;  2J3F A;  1LT9 B;  2J3U A;  2Q9I C;  2JHI F;  2FFD C;  1Z3U A;  2J0H A;  4M7F A;  2HLO B;  3H32 C;  1FZG B;  2J0Y A;  1LTJ B;  2J64 A;  1FZE C;  1FZD A;  2J5Z A;  2GY7 A;  1RF0 B;  1RE3 B;  1LT9 C;  1FIB A;  2HOD B;  4ZFG A;  4R9T A;  1FZF C;  1FZF B;  2FIB A;  2OYH B;  2JHL F;  2H43 C;  2HPC B;  2HLO C;  2H43 B;  3E1I B;  3HUS C;  2J60 A;  4NYT A;  3HUS B;  1FZG C;  1LTJ C;  1FIC A;  1N86 C;  2J3O A;  1M1J B;  1N86 B;  2J3F D;  2JHK F;  4R9J A;  4JZC A; 
#chains in the Genus database with same CATH topology
 3FIB A;  1RF0 C;  1RE3 C;  2Z4E B;  2HOD C;  1FZC C;  1FZC B;  2JHM F;  1RF1 B;  2OYH C;  2HPC C;  1LWU B;  3E1I C;  1N73 B;  3GHG C;  2D39 A;  1FID A;  1M1J C;  2JHH C;  3BVH B;  2J0G A;  1FZA B;  1RE4 B;  2XNX B;  2Z4E C;  2Q9I B;  1JC9 A;  2OYI C;  2FFD B;  2OYI B;  1RF1 C;  1FZB C;  1LWU C;  2J2P A;  1FZB B;  3H32 B;  1N73 C;  2WNP F;  2J1G A;  2J61 B;  2J61 A;  2J3G A;  3BVH C;  1FZE B;  1FZA C;  4EPU A;  4M7H A;  4JYO X;  1Z3S A;  1RE4 C;  2XNX C;  2J3F A;  1LT9 B;  2J3U A;  2Q9I C;  2JHI F;  2FFD C;  1Z3U A;  2J0H A;  4M7F A;  2HLO B;  3H32 C;  1FZG B;  2J0Y A;  1LTJ B;  2J64 A;  1FZE C;  1FZD A;  2J5Z A;  2GY7 A;  1RF0 B;  1RE3 B;  1LT9 C;  1FIB A;  2HOD B;  4ZFG A;  4R9T A;  1FZF C;  1FZF B;  2FIB A;  2OYH B;  2JHL F;  2H43 C;  2HPC B;  2HLO C;  2H43 B;  3E1I B;  3HUS C;  2J60 A;  4NYT A;  3HUS B;  1FZG C;  3GHG B;  1LTJ C;  1FIC A;  1N86 C;  2J3O A;  1M1J B;  1N86 B;  2J3F D;  2JHK F;  4R9J A;  4JZC A; 
#chains in the Genus database with same CATH homology
 3FIB A;  1RF0 C;  1RE3 C;  2Z4E B;  2HOD C;  1FZC C;  1FZC B;  2JHM F;  1RF1 B;  2OYH C;  2HPC C;  1LWU B;  3E1I C;  1N73 B;  3GHG C;  2D39 A;  1FID A;  1M1J C;  2JHH C;  3BVH B;  2J0G A;  1FZA B;  1RE4 B;  2XNX B;  2Z4E C;  2Q9I B;  1JC9 A;  2OYI C;  2FFD B;  2OYI B;  1RF1 C;  1FZB C;  1LWU C;  2J2P A;  1FZB B;  3H32 B;  1N73 C;  2WNP F;  2J1G A;  2J61 B;  2J61 A;  2J3G A;  3BVH C;  1FZE B;  1FZA C;  4EPU A;  4M7H A;  4JYO X;  1Z3S A;  1RE4 C;  2XNX C;  2J3F A;  1LT9 B;  2J3U A;  2Q9I C;  2JHI F;  2FFD C;  1Z3U A;  2J0H A;  4M7F A;  2HLO B;  3H32 C;  1FZG B;  2J0Y A;  1LTJ B;  2J64 A;  1FZE C;  1FZD A;  2J5Z A;  2GY7 A;  1RF0 B;  1RE3 B;  1LT9 C;  1FIB A;  2HOD B;  4ZFG A;  4R9T A;  1FZF C;  1FZF B;  2FIB A;  2OYH B;  2JHL F;  2H43 C;  2HPC B;  2HLO C;  2H43 B;  3E1I B;  3HUS C;  2J60 A;  4NYT A;  3HUS B;  1FZG C;  1LTJ C;  1FIC A;  1N86 C;  2J3O A;  1M1J B;  1N86 B;  2J3F D;  2JHK F;  4R9J A;  4JZC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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