1JC9A

Tachylectin 5a from tachypleus tridentatus (japanese horseshoe crab)
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
220
structure length
220
Chain Sequence
DPTDCADILLNGYRSSGGYRIWPKSWMTVGTLNVYCDMETDGGGWTVIQRRGNYGNPSDYFYKPWKNYKLGFGNIEKDFWLGNDRIFALTNQRNYMIRFDLKDKENDTRYAIYQDFWIENEDYLYCLHIGNYSGDAGNSFGRHNGHNFSTIDKDHDTHETHCAQTYKGGWWYDRCHESNLNGLYLNGEHNSYADGIEWRAWKGYHYSLPQVEMKIRPVEF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The 2.0-A crystal structure of tachylectin 5A provides evidence for the common origin of the innate immunity and the blood coagulation systems.
pubmed doi rcsb
molecule keywords techylectin-5A
molecule tags Sugar binding protein
total genus 77
structure length 220
sequence length 220
ec nomenclature
pdb deposition date 2001-06-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 1jc9A01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 1jc9A02
1LWUC 1N86B 2J0YA 4R9JA 2OYIB 3E1IB 2GY7A 1Z3SA 2JHMF 2XNXC 4ZFGA 1RF1B 2J3GA 4JZCA 1FZGC 1N73C 1RE3B 1M1JC 1FZFB 1FZEC 1LT9C 2JHKF 1Z3UA 4EPUA 2FFDC 3BVHC 2J2PA 1RF0C 2D39A 1FZBC 2HODB 3HUSC 2J0HA 1FZAC 1LT9B 3H32B 1FZCB 1FZBB 1FIDA 2J3FD 2JHLF 2Z4EB 1LTJB 2J5ZA 2HPCC 2H43C 3FIBA 1LWUB 1RE4C 2XNXB 4JYOX 2WNPF 2OYHC 2J3OA 1FZGB 1N73B 2J61A 1M1JB 1FZEB 2Q9IC 2FFDB 3BVHB 1JC9A 1RF0B 2HLOC 1RE4B 2J64A 4M7FA 1N86C 3HUSB 2OYIC 3E1IC 1FICA 1FZAB 2JHIF 2J61B 1RF1C 1FIBA 3GHGC 1FZFC 4NYTA 2HPCB 2H43B 1FZDA 2HODC 2J0GA 2JHHC 4R9TA 2FIBA 2J3FA 2OYHB 3H32C 1FZCC 4M7HA 2J60A 2J1GA 2Q9IB 2Z4EC 1LTJC 2J3UA 2HLOB 1RE3C
chains in the Genus database with same CATH superfamily
1LWUC 1N86B 2J0YA 4R9JA 2OYIB 3E1IB 2GY7A 1Z3SA 2JHMF 2XNXC 4ZFGA 1RF1B 2J3GA 4JZCA 1FZGC 1N73C 1RE3B 1M1JC 3GHGB 1FZEC 1LT9C 2JHKF 1Z3UA 4EPUA 2FFDC 1FZFB 3BVHC 2J2PA 1RF0C 2D39A 1FZBC 2HODB 3HUSC 2J0HA 1FZAC 1LT9B 3H32B 1FZCB 1FZBB 1FIDA 2J3FD 2JHLF 2Z4EB 1LTJB 2J5ZA 2HPCC 2H43C 3FIBA 1LWUB 1RE4C 2XNXB 4JYOX 2WNPF 2OYHC 2J3OA 1FZGB 1N73B 2J61A 1M1JB 1FZEB 2Q9IC 2FFDB 3BVHB 1JC9A 1RF0B 2HLOC 1RE4B 2J64A 4M7FA 1N86C 3HUSB 2OYIC 3E1IC 1FICA 1FZAB 2JHIF 2J61B 1RF1C 1FIBA 3GHGC 1FZFC 4NYTA 2HPCB 2H43B 1FZDA 2HODC 2J0GA 2JHHC 4R9TA 2FIBA 2J3FA 2OYHB 3H32C 1FZCC 4M7HA 2J60A 2J1GA 2Q9IB 2Z4EC 1LTJC 2J3UA 2HLOB 1RE3C
chains in the Genus database with same CATH topology
1LWUC 1N86B 2J0YA 4R9JA 2OYIB 3E1IB 2GY7A 1Z3SA 2JHMF 2XNXC 4ZFGA 1RF1B 2J3GA 4JZCA 1FZGC 1N73C 1RE3B 1M1JC 1FZFB 1FZEC 1LT9C 2JHKF 1Z3UA 4EPUA 2FFDC 3BVHC 2J2PA 1RF0C 2D39A 1FZBC 2HODB 3HUSC 2J0HA 1FZAC 1LT9B 3H32B 1FZCB 1FZBB 1FIDA 2J3FD 2JHLF 2Z4EB 1LTJB 2J5ZA 2HPCC 2H43C 3FIBA 1LWUB 1RE4C 2XNXB 4JYOX 2WNPF 2OYHC 2J3OA 1FZGB 1N73B 2J61A 1M1JB 1FZEB 2Q9IC 2FFDB 3BVHB 1JC9A 1RF0B 2HLOC 1RE4B 2J64A 4M7FA 1N86C 3HUSB 2OYIC 3E1IC 1FICA 1FZAB 2JHIF 2J61B 1RF1C 1FIBA 3GHGC 1FZFC 4NYTA 2HPCB 2H43B 1FZDA 2HODC 2J0GA 2JHHC 4R9TA 2FIBA 2J3FA 2OYHB 3H32C 1FZCC 4M7HA 2J60A 2J1GA 2Q9IB 2Z4EC 1LTJC 2J3UA 2HLOB 1RE3C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LWU C;  1N86 B;  2J0Y A;  4R9J A;  2OYI B;  3E1I B;  2GY7 A;  1Z3S A;  2JHM F;  2XNX C;  4ZFG A;  1RF1 B;  2J3G A;  4JZC A;  1FZG C;  1N73 C;  1RE3 B;  1M1J C;  1FZF B;  1FZE C;  1LT9 C;  2JHK F;  1Z3U A;  4EPU A;  2FFD C;  3BVH C;  2J2P A;  1RF0 C;  2D39 A;  1FZB C;  2HOD B;  3HUS C;  2J0H A;  1FZA C;  1LT9 B;  3H32 B;  1FZC B;  1FZB B;  1FID A;  2J3F D;  2JHL F;  2Z4E B;  1LTJ B;  2J5Z A;  2HPC C;  2H43 C;  3FIB A;  1LWU B;  1RE4 C;  2XNX B;  4JYO X;  2WNP F;  2OYH C;  2J3O A;  1FZG B;  1N73 B;  2J61 A;  1M1J B;  1FZE B;  2Q9I C;  2FFD B;  3BVH B;  1JC9 A;  1RF0 B;  2HLO C;  1RE4 B;  2J64 A;  4M7F A;  1N86 C;  3HUS B;  2OYI C;  3E1I C;  1FIC A;  1FZA B;  2JHI F;  2J61 B;  1RF1 C;  1FIB A;  3GHG C;  1FZF C;  4NYT A;  2HPC B;  2H43 B;  1FZD A;  2HOD C;  2J0G A;  2JHH C;  4R9T A;  2FIB A;  2J3F A;  2OYH B;  3H32 C;  1FZC C;  4M7H A;  2J60 A;  2J1G A;  2Q9I B;  2Z4E C;  1LTJ C;  2J3U A;  2HLO B;  1RE3 C; 
#chains in the Genus database with same CATH topology
 1LWU C;  1N86 B;  2J0Y A;  4R9J A;  2OYI B;  3E1I B;  2GY7 A;  1Z3S A;  2JHM F;  2XNX C;  4ZFG A;  1RF1 B;  2J3G A;  4JZC A;  1FZG C;  1N73 C;  1RE3 B;  1M1J C;  3GHG B;  1FZE C;  1LT9 C;  2JHK F;  1Z3U A;  4EPU A;  2FFD C;  1FZF B;  3BVH C;  2J2P A;  1RF0 C;  2D39 A;  1FZB C;  2HOD B;  3HUS C;  2J0H A;  1FZA C;  1LT9 B;  3H32 B;  1FZC B;  1FZB B;  1FID A;  2J3F D;  2JHL F;  2Z4E B;  1LTJ B;  2J5Z A;  2HPC C;  2H43 C;  3FIB A;  1LWU B;  1RE4 C;  2XNX B;  4JYO X;  2WNP F;  2OYH C;  2J3O A;  1FZG B;  1N73 B;  2J61 A;  1M1J B;  1FZE B;  2Q9I C;  2FFD B;  3BVH B;  1JC9 A;  1RF0 B;  2HLO C;  1RE4 B;  2J64 A;  4M7F A;  1N86 C;  3HUS B;  2OYI C;  3E1I C;  1FIC A;  1FZA B;  2JHI F;  2J61 B;  1RF1 C;  1FIB A;  3GHG C;  1FZF C;  4NYT A;  2HPC B;  2H43 B;  1FZD A;  2HOD C;  2J0G A;  2JHH C;  4R9T A;  2FIB A;  2J3F A;  2OYH B;  3H32 C;  1FZC C;  4M7H A;  2J60 A;  2J1G A;  2Q9I B;  2Z4E C;  1LTJ C;  2J3U A;  2HLO B;  1RE3 C; 
#chains in the Genus database with same CATH homology
 1LWU C;  1N86 B;  2J0Y A;  4R9J A;  2OYI B;  3E1I B;  2GY7 A;  1Z3S A;  2JHM F;  2XNX C;  4ZFG A;  1RF1 B;  2J3G A;  4JZC A;  1FZG C;  1N73 C;  1RE3 B;  1M1J C;  1FZF B;  1FZE C;  1LT9 C;  2JHK F;  1Z3U A;  4EPU A;  2FFD C;  3BVH C;  2J2P A;  1RF0 C;  2D39 A;  1FZB C;  2HOD B;  3HUS C;  2J0H A;  1FZA C;  1LT9 B;  3H32 B;  1FZC B;  1FZB B;  1FID A;  2J3F D;  2JHL F;  2Z4E B;  1LTJ B;  2J5Z A;  2HPC C;  2H43 C;  3FIB A;  1LWU B;  1RE4 C;  2XNX B;  4JYO X;  2WNP F;  2OYH C;  2J3O A;  1FZG B;  1N73 B;  2J61 A;  1M1J B;  1FZE B;  2Q9I C;  2FFD B;  3BVH B;  1JC9 A;  1RF0 B;  2HLO C;  1RE4 B;  2J64 A;  4M7F A;  1N86 C;  3HUS B;  2OYI C;  3E1I C;  1FIC A;  1FZA B;  2JHI F;  2J61 B;  1RF1 C;  1FIB A;  3GHG C;  1FZF C;  4NYT A;  2HPC B;  2H43 B;  1FZD A;  2HOD C;  2J0G A;  2JHH C;  4R9T A;  2FIB A;  2J3F A;  2OYH B;  3H32 C;  1FZC C;  4M7H A;  2J60 A;  2J1G A;  2Q9I B;  2Z4E C;  1LTJ C;  2J3U A;  2HLO B;  1RE3 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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