1JC9A

Tachylectin 5a from tachypleus tridentatus (japanese horseshoe crab)
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
220
structure length
220
Chain Sequence
DPTDCADILLNGYRSSGGYRIWPKSWMTVGTLNVYCDMETDGGGWTVIQRRGNYGNPSDYFYKPWKNYKLGFGNIEKDFWLGNDRIFALTNQRNYMIRFDLKDKENDTRYAIYQDFWIENEDYLYCLHIGNYSGDAGNSFGRHNGHNFSTIDKDHDTHETHCAQTYKGGWWYDRCHESNLNGLYLNGEHNSYADGIEWRAWKGYHYSLPQVEMKIRPVEF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords techylectin-5A
publication title The 2.0-A crystal structure of tachylectin 5A provides evidence for the common origin of the innate immunity and the blood coagulation systems.
pubmed doi rcsb
molecule tags Sugar binding protein
total genus 77
structure length 220
sequence length 220
ec nomenclature
pdb deposition date 2001-06-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 1jc9A01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 1jc9A02
1FZDA 2HPCC 4R9JA 2JHMF 2JHIF 2J5ZA 1LWUC 1FZEC 1FZGB 2Q9IC 1FZFC 1LT9B 3HUSC 2HLOB 3H32C 1M1JC 1RE4C 4ZFGA 1LTJB 2JHHC 2Z4EC 1N86C 1RE3B 2JHKF 2FFDB 2GY7A 4JYOX 2FIBA 1FZCB 2J61B 4NYTA 2J0GA 3E1IB 3BVHB 4EPUA 2J0HA 1FZGC 1FZAB 1FIBA 1N73B 2HODB 1LT9C 2J3OA 2HLOC 1FICA 2OYHB 2H43B 2OYHC 1FZBB 1LTJC 2XNXB 1RE3C 3FIBA 2FFDC 3GHGC 2D39A 1RF1B 1FZCC 2OYIB 2J0YA 1RF0B 4JZCA 3E1IC 3BVHC 1FIDA 2J2PA 2HPCB 1FZAC 4R9TA 1Z3SA 2HODC 1N73C 2J64A 2J60A 2J3FD 2H43C 1LWUB 1Z3UA 1FZEB 1FZBC 4M7HA 2Q9IB 1FZFB 3HUSB 2XNXC 3H32B 2J61A 2J1GA 2J3UA 1M1JB 1RE4B 2J3FA 1RF1C 1JC9A 2Z4EB 2WNPF 2OYIC 2JHLF 1N86B 4M7FA 2J3GA 1RF0C
chains in the Genus database with same CATH superfamily
1FZDA 2HPCC 4R9JA 2JHMF 2JHIF 2J5ZA 1LWUC 1FZEC 1FZGB 2Q9IC 1FZFC 1LT9B 3HUSC 2HLOB 3H32C 1M1JC 1RE4C 4ZFGA 1LTJB 2JHHC 2Z4EC 1N86C 1RE3B 2JHKF 2FFDB 2GY7A 3GHGB 4JYOX 2FIBA 1FZCB 2J61B 4NYTA 2J0GA 3E1IB 3BVHB 4EPUA 2J0HA 1FZGC 1FZAB 1FIBA 1N73B 2HODB 1LT9C 2J3OA 2HLOC 1FICA 2OYHB 2H43B 2OYHC 1FZBB 1LTJC 2XNXB 1RE3C 3FIBA 2FFDC 3GHGC 2D39A 1RF1B 1FZCC 2OYIB 2J0YA 1RF0B 4JZCA 3E1IC 3BVHC 1FIDA 2J2PA 2HPCB 1FZAC 4R9TA 1Z3SA 2HODC 1N73C 2J64A 2J60A 2J3FD 2H43C 1LWUB 1Z3UA 1FZEB 1FZBC 4M7HA 2Q9IB 1FZFB 3HUSB 2XNXC 3H32B 2J61A 2J1GA 2J3UA 1M1JB 1RE4B 2J3FA 1RF1C 1JC9A 2Z4EB 2WNPF 2OYIC 2JHLF 1N86B 4M7FA 2J3GA 1RF0C
chains in the Genus database with same CATH topology
1FZDA 2HPCC 4R9JA 2JHMF 2JHIF 2J5ZA 1LWUC 1FZEC 1FZGB 2Q9IC 1FZFC 1LT9B 3HUSC 2HLOB 3H32C 1M1JC 1RE4C 4ZFGA 1LTJB 2JHHC 2Z4EC 1N86C 1RE3B 2JHKF 2FFDB 2GY7A 4JYOX 2FIBA 1FZCB 2J61B 4NYTA 2J0GA 3E1IB 3BVHB 4EPUA 2J0HA 1FZGC 1FZAB 1FIBA 1N73B 2HODB 1LT9C 2J3OA 2HLOC 1FICA 2OYHB 2H43B 2OYHC 1FZBB 1LTJC 2XNXB 1RE3C 3FIBA 2FFDC 3GHGC 2D39A 1RF1B 1FZCC 2OYIB 2J0YA 1RF0B 4JZCA 3E1IC 3BVHC 1FIDA 2J2PA 2HPCB 1FZAC 4R9TA 1Z3SA 2HODC 1N73C 2J64A 2J60A 2J3FD 2H43C 1LWUB 1Z3UA 1FZEB 1FZBC 4M7HA 2Q9IB 1FZFB 3HUSB 2XNXC 3H32B 2J61A 2J1GA 2J3UA 1M1JB 1RE4B 2J3FA 1RF1C 1JC9A 2Z4EB 2WNPF 2OYIC 2JHLF 1N86B 4M7FA 2J3GA 1RF0C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FZD A;  2HPC C;  4R9J A;  2JHM F;  2JHI F;  2J5Z A;  1LWU C;  1FZE C;  1FZG B;  2Q9I C;  1FZF C;  1LT9 B;  3HUS C;  2HLO B;  3H32 C;  1M1J C;  1RE4 C;  4ZFG A;  1LTJ B;  2JHH C;  2Z4E C;  1N86 C;  1RE3 B;  2JHK F;  2FFD B;  2GY7 A;  4JYO X;  2FIB A;  1FZC B;  2J61 B;  4NYT A;  2J0G A;  3E1I B;  3BVH B;  4EPU A;  2J0H A;  1FZG C;  1FZA B;  1FIB A;  1N73 B;  2HOD B;  1LT9 C;  2J3O A;  2HLO C;  1FIC A;  2OYH B;  2H43 B;  2OYH C;  1FZB B;  1LTJ C;  2XNX B;  1RE3 C;  3FIB A;  2FFD C;  3GHG C;  2D39 A;  1RF1 B;  1FZC C;  2OYI B;  2J0Y A;  1RF0 B;  4JZC A;  3E1I C;  3BVH C;  1FID A;  2J2P A;  2HPC B;  1FZA C;  4R9T A;  1Z3S A;  2HOD C;  1N73 C;  2J64 A;  2J60 A;  2J3F D;  2H43 C;  1LWU B;  1Z3U A;  1FZE B;  1FZB C;  4M7H A;  2Q9I B;  1FZF B;  3HUS B;  2XNX C;  3H32 B;  2J61 A;  2J1G A;  2J3U A;  1M1J B;  1RE4 B;  2J3F A;  1RF1 C;  1JC9 A;  2Z4E B;  2WNP F;  2OYI C;  2JHL F;  1N86 B;  4M7F A;  2J3G A;  1RF0 C; 
#chains in the Genus database with same CATH topology
 1FZD A;  2HPC C;  4R9J A;  2JHM F;  2JHI F;  2J5Z A;  1LWU C;  1FZE C;  1FZG B;  2Q9I C;  1FZF C;  1LT9 B;  3HUS C;  2HLO B;  3H32 C;  1M1J C;  1RE4 C;  4ZFG A;  1LTJ B;  2JHH C;  2Z4E C;  1N86 C;  1RE3 B;  2JHK F;  2FFD B;  2GY7 A;  3GHG B;  4JYO X;  2FIB A;  1FZC B;  2J61 B;  4NYT A;  2J0G A;  3E1I B;  3BVH B;  4EPU A;  2J0H A;  1FZG C;  1FZA B;  1FIB A;  1N73 B;  2HOD B;  1LT9 C;  2J3O A;  2HLO C;  1FIC A;  2OYH B;  2H43 B;  2OYH C;  1FZB B;  1LTJ C;  2XNX B;  1RE3 C;  3FIB A;  2FFD C;  3GHG C;  2D39 A;  1RF1 B;  1FZC C;  2OYI B;  2J0Y A;  1RF0 B;  4JZC A;  3E1I C;  3BVH C;  1FID A;  2J2P A;  2HPC B;  1FZA C;  4R9T A;  1Z3S A;  2HOD C;  1N73 C;  2J64 A;  2J60 A;  2J3F D;  2H43 C;  1LWU B;  1Z3U A;  1FZE B;  1FZB C;  4M7H A;  2Q9I B;  1FZF B;  3HUS B;  2XNX C;  3H32 B;  2J61 A;  2J1G A;  2J3U A;  1M1J B;  1RE4 B;  2J3F A;  1RF1 C;  1JC9 A;  2Z4E B;  2WNP F;  2OYI C;  2JHL F;  1N86 B;  4M7F A;  2J3G A;  1RF0 C; 
#chains in the Genus database with same CATH homology
 1FZD A;  2HPC C;  4R9J A;  2JHM F;  2JHI F;  2J5Z A;  1LWU C;  1FZE C;  1FZG B;  2Q9I C;  1FZF C;  1LT9 B;  3HUS C;  2HLO B;  3H32 C;  1M1J C;  1RE4 C;  4ZFG A;  1LTJ B;  2JHH C;  2Z4E C;  1N86 C;  1RE3 B;  2JHK F;  2FFD B;  2GY7 A;  4JYO X;  2FIB A;  1FZC B;  2J61 B;  4NYT A;  2J0G A;  3E1I B;  3BVH B;  4EPU A;  2J0H A;  1FZG C;  1FZA B;  1FIB A;  1N73 B;  2HOD B;  1LT9 C;  2J3O A;  2HLO C;  1FIC A;  2OYH B;  2H43 B;  2OYH C;  1FZB B;  1LTJ C;  2XNX B;  1RE3 C;  3FIB A;  2FFD C;  3GHG C;  2D39 A;  1RF1 B;  1FZC C;  2OYI B;  2J0Y A;  1RF0 B;  4JZC A;  3E1I C;  3BVH C;  1FID A;  2J2P A;  2HPC B;  1FZA C;  4R9T A;  1Z3S A;  2HOD C;  1N73 C;  2J64 A;  2J60 A;  2J3F D;  2H43 C;  1LWU B;  1Z3U A;  1FZE B;  1FZB C;  4M7H A;  2Q9I B;  1FZF B;  3HUS B;  2XNX C;  3H32 B;  2J61 A;  2J1G A;  2J3U A;  1M1J B;  1RE4 B;  2J3F A;  1RF1 C;  1JC9 A;  2Z4E B;  2WNP F;  2OYI C;  2JHL F;  1N86 B;  4M7F A;  2J3G A;  1RF0 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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