1JC9A

Tachylectin 5a from tachypleus tridentatus (japanese horseshoe crab)
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
220
structure length
220
Chain Sequence
DPTDCADILLNGYRSSGGYRIWPKSWMTVGTLNVYCDMETDGGGWTVIQRRGNYGNPSDYFYKPWKNYKLGFGNIEKDFWLGNDRIFALTNQRNYMIRFDLKDKENDTRYAIYQDFWIENEDYLYCLHIGNYSGDAGNSFGRHNGHNFSTIDKDHDTHETHCAQTYKGGWWYDRCHESNLNGLYLNGEHNSYADGIEWRAWKGYHYSLPQVEMKIRPVEF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
publication title The 2.0-A crystal structure of tachylectin 5A provides evidence for the common origin of the innate immunity and the blood coagulation systems.
pubmed doi rcsb
molecule keywords techylectin-5A
total genus 77
structure length 220
sequence length 220
ec nomenclature
pdb deposition date 2001-06-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 1jc9A01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 1jc9A02
3HUSC 1FZEB 4ZFGA 2FIBA 2JHIF 2J5ZA 3E1IC 2OYIC 2XNXB 3BVHC 1LT9C 1RE4C 2J61B 2HPCC 2OYHC 3GHGC 2J3OA 2D39A 4JYOX 2Q9IB 1FZDA 2J3FA 2HODC 4NYTA 1FZAC 1LTJC 2J0HA 2H43C 3FIBA 1FZFB 2JHLF 4EPUA 1FZEC 2HLOB 1Z3SA 2Z4EC 2J0YA 2XNXC 1RF0B 1N86B 2JHKF 2Q9IC 3H32B 2GY7A 1FZBB 1FZCB 1M1JB 2FFDB 1N73B 1FIDA 1JC9A 2J3UA 1FZFC 2JHHC 4R9TA 2HLOC 2JHMF 1LWUB 2J1GA 2J64A 2J0GA 1RF0C 2J3GA 4R9JA 1FZGB 1N86C 1RF1B 1RE3B 3HUSB 3H32C 1FZBC 1FZCC 1M1JC 2FFDC 1N73C 3E1IB 2Z4EB 2OYIB 3BVHB 4JZCA 1LT9B 2J3FD 1RE4B 2HPCB 4M7FA 2OYHB 2J2PA 4M7HA 2J61A 1FIBA 1LWUC 2WNPF 2HODB 1FICA 1FZGC 1FZAB 1LTJB 1RF1C 2J60A 2H43B 1RE3C 1Z3UA
chains in the Genus database with same CATH superfamily
3HUSC 1FZEB 4ZFGA 2FIBA 2JHIF 2J5ZA 3E1IC 2OYIC 2XNXB 3BVHC 1LT9C 1RE4C 2J61B 2HPCC 2OYHC 3GHGC 2J3OA 2D39A 4JYOX 2Q9IB 1FZDA 2J3FA 2HODC 4NYTA 1FZAC 1LTJC 2J0HA 2H43C 3FIBA 1FZFB 2JHLF 4EPUA 1FZEC 2HLOB 1Z3SA 2Z4EC 2J0YA 2XNXC 1RF0B 1N86B 2JHKF 2Q9IC 3H32B 2GY7A 1FZBB 1FZCB 1M1JB 2FFDB 1N73B 1FIDA 1JC9A 2J3UA 1FZFC 2JHHC 4R9TA 2HLOC 2JHMF 1LWUB 2J1GA 2J64A 2J0GA 1RF0C 2J3GA 4R9JA 1FZGB 1N86C 1RF1B 1RE3B 3HUSB 3H32C 1FZBC 1FZCC 1M1JC 2FFDC 1N73C 3E1IB 2Z4EB 2OYIB 3BVHB 4JZCA 1LT9B 2J3FD 1RE4B 2HPCB 4M7FA 2OYHB 2J2PA 3GHGB 4M7HA 2J61A 1FIBA 1LWUC 2WNPF 2HODB 1FICA 1FZGC 1FZAB 1LTJB 1RF1C 2J60A 2H43B 1RE3C 1Z3UA
chains in the Genus database with same CATH topology
3HUSC 1FZEB 4ZFGA 2FIBA 2JHIF 2J5ZA 3E1IC 2OYIC 2XNXB 3BVHC 1LT9C 1RE4C 2J61B 2HPCC 2OYHC 3GHGC 2J3OA 2D39A 4JYOX 2Q9IB 1FZDA 2J3FA 2HODC 4NYTA 1FZAC 1LTJC 2J0HA 2H43C 3FIBA 1FZFB 2JHLF 4EPUA 1FZEC 2HLOB 1Z3SA 2Z4EC 2J0YA 2XNXC 1RF0B 1N86B 2JHKF 2Q9IC 3H32B 2GY7A 1FZBB 1FZCB 1M1JB 2FFDB 1N73B 1FIDA 1JC9A 2J3UA 1FZFC 2JHHC 4R9TA 2HLOC 2JHMF 1LWUB 2J1GA 2J64A 2J0GA 1RF0C 2J3GA 4R9JA 1FZGB 1N86C 1RF1B 1RE3B 3HUSB 3H32C 1FZBC 1FZCC 1M1JC 2FFDC 1N73C 3E1IB 2Z4EB 2OYIB 3BVHB 4JZCA 1LT9B 2J3FD 1RE4B 2HPCB 4M7FA 2OYHB 2J2PA 4M7HA 2J61A 1FIBA 1LWUC 2WNPF 2HODB 1FICA 1FZGC 1FZAB 1LTJB 1RF1C 2J60A 2H43B 1RE3C 1Z3UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HUS C;  1FZE B;  4ZFG A;  2FIB A;  2JHI F;  2J5Z A;  3E1I C;  2OYI C;  2XNX B;  3BVH C;  1LT9 C;  1RE4 C;  2J61 B;  2HPC C;  2OYH C;  3GHG C;  2J3O A;  2D39 A;  4JYO X;  2Q9I B;  1FZD A;  2J3F A;  2HOD C;  4NYT A;  1FZA C;  1LTJ C;  2J0H A;  2H43 C;  3FIB A;  1FZF B;  2JHL F;  4EPU A;  1FZE C;  2HLO B;  1Z3S A;  2Z4E C;  2J0Y A;  2XNX C;  1RF0 B;  1N86 B;  2JHK F;  2Q9I C;  3H32 B;  2GY7 A;  1FZB B;  1FZC B;  1M1J B;  2FFD B;  1N73 B;  1FID A;  1JC9 A;  2J3U A;  1FZF C;  2JHH C;  4R9T A;  2HLO C;  2JHM F;  1LWU B;  2J1G A;  2J64 A;  2J0G A;  1RF0 C;  2J3G A;  4R9J A;  1FZG B;  1N86 C;  1RF1 B;  1RE3 B;  3HUS B;  3H32 C;  1FZB C;  1FZC C;  1M1J C;  2FFD C;  1N73 C;  3E1I B;  2Z4E B;  2OYI B;  3BVH B;  4JZC A;  1LT9 B;  2J3F D;  1RE4 B;  2HPC B;  4M7F A;  2OYH B;  2J2P A;  4M7H A;  2J61 A;  1FIB A;  1LWU C;  2WNP F;  2HOD B;  1FIC A;  1FZG C;  1FZA B;  1LTJ B;  1RF1 C;  2J60 A;  2H43 B;  1RE3 C;  1Z3U A; 
#chains in the Genus database with same CATH topology
 3HUS C;  1FZE B;  4ZFG A;  2FIB A;  2JHI F;  2J5Z A;  3E1I C;  2OYI C;  2XNX B;  3BVH C;  1LT9 C;  1RE4 C;  2J61 B;  2HPC C;  2OYH C;  3GHG C;  2J3O A;  2D39 A;  4JYO X;  2Q9I B;  1FZD A;  2J3F A;  2HOD C;  4NYT A;  1FZA C;  1LTJ C;  2J0H A;  2H43 C;  3FIB A;  1FZF B;  2JHL F;  4EPU A;  1FZE C;  2HLO B;  1Z3S A;  2Z4E C;  2J0Y A;  2XNX C;  1RF0 B;  1N86 B;  2JHK F;  2Q9I C;  3H32 B;  2GY7 A;  1FZB B;  1FZC B;  1M1J B;  2FFD B;  1N73 B;  1FID A;  1JC9 A;  2J3U A;  1FZF C;  2JHH C;  4R9T A;  2HLO C;  2JHM F;  1LWU B;  2J1G A;  2J64 A;  2J0G A;  1RF0 C;  2J3G A;  4R9J A;  1FZG B;  1N86 C;  1RF1 B;  1RE3 B;  3HUS B;  3H32 C;  1FZB C;  1FZC C;  1M1J C;  2FFD C;  1N73 C;  3E1I B;  2Z4E B;  2OYI B;  3BVH B;  4JZC A;  1LT9 B;  2J3F D;  1RE4 B;  2HPC B;  4M7F A;  2OYH B;  2J2P A;  3GHG B;  4M7H A;  2J61 A;  1FIB A;  1LWU C;  2WNP F;  2HOD B;  1FIC A;  1FZG C;  1FZA B;  1LTJ B;  1RF1 C;  2J60 A;  2H43 B;  1RE3 C;  1Z3U A; 
#chains in the Genus database with same CATH homology
 3HUS C;  1FZE B;  4ZFG A;  2FIB A;  2JHI F;  2J5Z A;  3E1I C;  2OYI C;  2XNX B;  3BVH C;  1LT9 C;  1RE4 C;  2J61 B;  2HPC C;  2OYH C;  3GHG C;  2J3O A;  2D39 A;  4JYO X;  2Q9I B;  1FZD A;  2J3F A;  2HOD C;  4NYT A;  1FZA C;  1LTJ C;  2J0H A;  2H43 C;  3FIB A;  1FZF B;  2JHL F;  4EPU A;  1FZE C;  2HLO B;  1Z3S A;  2Z4E C;  2J0Y A;  2XNX C;  1RF0 B;  1N86 B;  2JHK F;  2Q9I C;  3H32 B;  2GY7 A;  1FZB B;  1FZC B;  1M1J B;  2FFD B;  1N73 B;  1FID A;  1JC9 A;  2J3U A;  1FZF C;  2JHH C;  4R9T A;  2HLO C;  2JHM F;  1LWU B;  2J1G A;  2J64 A;  2J0G A;  1RF0 C;  2J3G A;  4R9J A;  1FZG B;  1N86 C;  1RF1 B;  1RE3 B;  3HUS B;  3H32 C;  1FZB C;  1FZC C;  1M1J C;  2FFD C;  1N73 C;  3E1I B;  2Z4E B;  2OYI B;  3BVH B;  4JZC A;  1LT9 B;  2J3F D;  1RE4 B;  2HPC B;  4M7F A;  2OYH B;  2J2P A;  4M7H A;  2J61 A;  1FIB A;  1LWU C;  2WNP F;  2HOD B;  1FIC A;  1FZG C;  1FZA B;  1LTJ B;  1RF1 C;  2J60 A;  2H43 B;  1RE3 C;  1Z3U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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