2J0HA

L-ficolin complexed to acetyl-choline
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
214
structure length
214
Chain Sequence
TGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHTSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Insights Into the Innate Immune Recognition Specificities of L- and H-Ficolins.
pubmed doi rcsb
molecule tags Lectin
source organism Homo sapiens
molecule keywords FICOLIN-2
total genus 66
structure length 214
sequence length 214
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2006-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 2j0hA01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 2j0hA02
2XNXC 4M7HA 1N73B 3E1IB 1RE3B 2J64A 2HLOB 3BVHB 2JHIF 4NYTA 1FZBB 4ZFGA 1FZFB 2OYHC 1LWUC 2FFDB 2J0HA 1M1JB 1FZAC 1RF0C 1RE4C 3H32B 2J1GA 3HUSB 2HPCB 2H43B 1FZEB 2J2PA 2J61A 1LTJC 2J61B 1FICA 4R9JA 1FZCB 4JYOX 2Z4EC 1FZDA 2J60A 2XNXB 4JZCA 2JHMF 1N86B 1JC9A 2J3GA 2OYHB 2Q9IC 2J0YA 2J3FD 1N73C 1FIBA 1FZAB 1RF0B 1RE4B 3BVHC 2J3FA 2FIBA 1LTJB 2WNPF 1M1JC 2HODC 2Z4EB 1Z3SA 3FIBA 4EPUA 2J0GA 1RF1C 3HUSC 2OYIC 1LT9C 1LWUB 1FZGC 2GY7A 1Z3UA 2J3UA 2JHKF 4R9TA 2D39A 1FZCC 3E1IC 2Q9IB 1RE3C 2J5ZA 3GHGC 2HLOC 2JHLF 1FZBC 2JHHC 1N86C 1FZFC 2FFDC 2J3OA 3H32C 4M7FA 2HPCC 2H43C 1FZEC 2HODB 1FIDA 1RF1B 2OYIB 1LT9B 1FZGB
chains in the Genus database with same CATH superfamily
2XNXC 4M7HA 1N73B 3E1IB 1RE3B 3GHGB 2J64A 2HLOB 3BVHB 2JHIF 4NYTA 1FZBB 4ZFGA 1FZFB 2OYHC 1LWUC 2FFDB 2J0HA 1M1JB 1FZAC 1RF0C 1RE4C 3H32B 2J1GA 3HUSB 2HPCB 2H43B 1FZEB 2J2PA 2J61A 1LTJC 2J61B 1FICA 4R9JA 1FZCB 4JYOX 2Z4EC 1FZDA 2J60A 2XNXB 4JZCA 2JHMF 1N86B 1JC9A 2J3GA 2OYHB 2Q9IC 2J0YA 2J3FD 1N73C 1FIBA 1FZAB 1RF0B 1RE4B 3BVHC 2J3FA 2FIBA 1LTJB 2WNPF 1M1JC 2HODC 2Z4EB 1Z3SA 3FIBA 4EPUA 2J0GA 1RF1C 3HUSC 2OYIC 1LT9C 1LWUB 1FZGC 2GY7A 1Z3UA 2J3UA 2JHKF 4R9TA 2D39A 1FZCC 3E1IC 2Q9IB 1RE3C 2J5ZA 3GHGC 2HLOC 2JHLF 1FZBC 2JHHC 1N86C 1FZFC 2FFDC 2J3OA 3H32C 4M7FA 2HPCC 2H43C 1FZEC 2HODB 1FIDA 1RF1B 2OYIB 1LT9B 1FZGB
chains in the Genus database with same CATH topology
2XNXC 4M7HA 1N73B 3E1IB 1RE3B 2J64A 2HLOB 3BVHB 2JHIF 4NYTA 1FZBB 4ZFGA 1FZFB 2OYHC 1LWUC 2FFDB 2J0HA 1M1JB 1FZAC 1RF0C 1RE4C 3H32B 2J1GA 3HUSB 2HPCB 2H43B 1FZEB 2J2PA 2J61A 1LTJC 2J61B 1FICA 4R9JA 1FZCB 4JYOX 2Z4EC 1FZDA 2J60A 2XNXB 4JZCA 2JHMF 1N86B 1JC9A 2J3GA 2OYHB 2Q9IC 2J0YA 2J3FD 1N73C 1FIBA 1FZAB 1RF0B 1RE4B 3BVHC 2J3FA 2FIBA 1LTJB 2WNPF 1M1JC 2HODC 2Z4EB 1Z3SA 3FIBA 4EPUA 2J0GA 1RF1C 3HUSC 2OYIC 1LT9C 1LWUB 1FZGC 2GY7A 1Z3UA 2J3UA 2JHKF 4R9TA 2D39A 1FZCC 3E1IC 2Q9IB 1RE3C 2J5ZA 3GHGC 2HLOC 2JHLF 1FZBC 2JHHC 1N86C 1FZFC 2FFDC 2J3OA 3H32C 4M7FA 2HPCC 2H43C 1FZEC 2HODB 1FIDA 1RF1B 2OYIB 1LT9B 1FZGB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XNX C;  4M7H A;  1N73 B;  3E1I B;  1RE3 B;  2J64 A;  2HLO B;  3BVH B;  2JHI F;  4NYT A;  1FZB B;  4ZFG A;  1FZF B;  2OYH C;  1LWU C;  2FFD B;  2J0H A;  1M1J B;  1FZA C;  1RF0 C;  1RE4 C;  3H32 B;  2J1G A;  3HUS B;  2HPC B;  2H43 B;  1FZE B;  2J2P A;  2J61 A;  1LTJ C;  2J61 B;  1FIC A;  4R9J A;  1FZC B;  4JYO X;  2Z4E C;  1FZD A;  2J60 A;  2XNX B;  4JZC A;  2JHM F;  1N86 B;  1JC9 A;  2J3G A;  2OYH B;  2Q9I C;  2J0Y A;  2J3F D;  1N73 C;  1FIB A;  1FZA B;  1RF0 B;  1RE4 B;  3BVH C;  2J3F A;  2FIB A;  1LTJ B;  2WNP F;  1M1J C;  2HOD C;  2Z4E B;  1Z3S A;  3FIB A;  4EPU A;  2J0G A;  1RF1 C;  3HUS C;  2OYI C;  1LT9 C;  1LWU B;  1FZG C;  2GY7 A;  1Z3U A;  2J3U A;  2JHK F;  4R9T A;  2D39 A;  1FZC C;  3E1I C;  2Q9I B;  1RE3 C;  2J5Z A;  3GHG C;  2HLO C;  2JHL F;  1FZB C;  2JHH C;  1N86 C;  1FZF C;  2FFD C;  2J3O A;  3H32 C;  4M7F A;  2HPC C;  2H43 C;  1FZE C;  2HOD B;  1FID A;  1RF1 B;  2OYI B;  1LT9 B;  1FZG B; 
#chains in the Genus database with same CATH topology
 2XNX C;  4M7H A;  1N73 B;  3E1I B;  1RE3 B;  3GHG B;  2J64 A;  2HLO B;  3BVH B;  2JHI F;  4NYT A;  1FZB B;  4ZFG A;  1FZF B;  2OYH C;  1LWU C;  2FFD B;  2J0H A;  1M1J B;  1FZA C;  1RF0 C;  1RE4 C;  3H32 B;  2J1G A;  3HUS B;  2HPC B;  2H43 B;  1FZE B;  2J2P A;  2J61 A;  1LTJ C;  2J61 B;  1FIC A;  4R9J A;  1FZC B;  4JYO X;  2Z4E C;  1FZD A;  2J60 A;  2XNX B;  4JZC A;  2JHM F;  1N86 B;  1JC9 A;  2J3G A;  2OYH B;  2Q9I C;  2J0Y A;  2J3F D;  1N73 C;  1FIB A;  1FZA B;  1RF0 B;  1RE4 B;  3BVH C;  2J3F A;  2FIB A;  1LTJ B;  2WNP F;  1M1J C;  2HOD C;  2Z4E B;  1Z3S A;  3FIB A;  4EPU A;  2J0G A;  1RF1 C;  3HUS C;  2OYI C;  1LT9 C;  1LWU B;  1FZG C;  2GY7 A;  1Z3U A;  2J3U A;  2JHK F;  4R9T A;  2D39 A;  1FZC C;  3E1I C;  2Q9I B;  1RE3 C;  2J5Z A;  3GHG C;  2HLO C;  2JHL F;  1FZB C;  2JHH C;  1N86 C;  1FZF C;  2FFD C;  2J3O A;  3H32 C;  4M7F A;  2HPC C;  2H43 C;  1FZE C;  2HOD B;  1FID A;  1RF1 B;  2OYI B;  1LT9 B;  1FZG B; 
#chains in the Genus database with same CATH homology
 2XNX C;  4M7H A;  1N73 B;  3E1I B;  1RE3 B;  2J64 A;  2HLO B;  3BVH B;  2JHI F;  4NYT A;  1FZB B;  4ZFG A;  1FZF B;  2OYH C;  1LWU C;  2FFD B;  2J0H A;  1M1J B;  1FZA C;  1RF0 C;  1RE4 C;  3H32 B;  2J1G A;  3HUS B;  2HPC B;  2H43 B;  1FZE B;  2J2P A;  2J61 A;  1LTJ C;  2J61 B;  1FIC A;  4R9J A;  1FZC B;  4JYO X;  2Z4E C;  1FZD A;  2J60 A;  2XNX B;  4JZC A;  2JHM F;  1N86 B;  1JC9 A;  2J3G A;  2OYH B;  2Q9I C;  2J0Y A;  2J3F D;  1N73 C;  1FIB A;  1FZA B;  1RF0 B;  1RE4 B;  3BVH C;  2J3F A;  2FIB A;  1LTJ B;  2WNP F;  1M1J C;  2HOD C;  2Z4E B;  1Z3S A;  3FIB A;  4EPU A;  2J0G A;  1RF1 C;  3HUS C;  2OYI C;  1LT9 C;  1LWU B;  1FZG C;  2GY7 A;  1Z3U A;  2J3U A;  2JHK F;  4R9T A;  2D39 A;  1FZC C;  3E1I C;  2Q9I B;  1RE3 C;  2J5Z A;  3GHG C;  2HLO C;  2JHL F;  1FZB C;  2JHH C;  1N86 C;  1FZF C;  2FFD C;  2J3O A;  3H32 C;  4M7F A;  2HPC C;  2H43 C;  1FZE C;  2HOD B;  1FID A;  1RF1 B;  2OYI B;  1LT9 B;  1FZG B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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