1FZAB

Crystal structure of fibrinogen fragment d
Total Genus 80
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
313
structure length
313
Chain Sequence
KHQLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRTPCTVSCNIPVVSGKECEEIIRKGGETSEMYLIQPDSSVKPYRVYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYCGLPGEYWLGNDKISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGASQLMGENRTMTIHNGMFFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGGQYTWDMAKHGTDDGVVWMNWKGSWYSMRKMSMKIRPFFPQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Blood coagulation
molecule keywords FIBRINOGEN
publication title Crystal structures of fragment D from human fibrinogen and its crosslinked counterpart from fibrin.
pubmed doi rcsb
total genus 80
structure length 313
sequence length 313
chains with identical sequence E
ec nomenclature
pdb deposition date 1997-08-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 1fzaB01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 1fzaB02
4JYOX 2J3UA 1FIBA 2OYIB 1M1JC 1FZCC 1RE3B 2HLOB 2J3GA 1FICA 4M7HA 1LTJB 3E1IB 4JZCA 2Z4EC 1RF0B 2H43C 2WNPF 2HODB 1FZFB 1FZBB 2OYIC 2J0HA 2J2PA 2HLOC 4R9JA 2JHLF 2J64A 1FZFC 1LWUB 2JHIF 1LTJC 2JHMF 3E1IC 1RF0C 2Q9IB 2HODC 2XNXB 1FZBC 4ZFGA 3HUSB 4NYTA 3H32B 1LWUC 2J61B 4R9TA 2J0YA 1FZDA 2Q9IC 1FZEB 2XNXC 3HUSC 1Z3UA 1FZGB 3H32C 1FZAB 1RE4B 1FZEC 1JC9A 4M7FA 1RF1B 2J0GA 1FIDA 1FZGC 2JHKF 1FZAC 1RE4C 3BVHB 2FFDB 1N73B 1RF1C 2OYHB 2JHHC 3GHGC 2HPCB 4EPUA 1Z3SA 1N86B 3FIBA 3BVHC 2FFDC 1N73C 2OYHC 2J1GA 2HPCC 2J5ZA 2J61A 2J60A 1N86C 2J3FA 1LT9B 2J3OA 2GY7A 1M1JB 1RE3C 2FIBA 1FZCB 2D39A 2Z4EB 2J3FD 2H43B 1LT9C
chains in the Genus database with same CATH superfamily
4JYOX 2J3UA 1FIBA 2OYIB 1M1JC 1FZCC 1RE3B 2HLOB 2J3GA 1FICA 4M7HA 1LTJB 3E1IB 4JZCA 2Z4EC 1RF0B 2H43C 2WNPF 2HODB 1FZFB 1FZBB 2OYIC 2J0HA 2J2PA 2HLOC 4R9JA 2JHLF 2J64A 1FZFC 1LWUB 2JHIF 1LTJC 2JHMF 3E1IC 1RF0C 2Q9IB 2HODC 2XNXB 1FZBC 4ZFGA 3HUSB 4NYTA 3H32B 1LWUC 2J61B 4R9TA 2J0YA 1FZDA 2Q9IC 1FZEB 2XNXC 3HUSC 1Z3UA 1FZGB 3H32C 1FZAB 1RE4B 1FZEC 1JC9A 4M7FA 1RF1B 2J0GA 1FIDA 3GHGB 1FZGC 2JHKF 1FZAC 1RE4C 3BVHB 2FFDB 1N73B 1RF1C 2OYHB 2JHHC 3GHGC 2HPCB 4EPUA 1Z3SA 1N86B 3FIBA 3BVHC 2FFDC 1N73C 2OYHC 2J1GA 2HPCC 2J5ZA 2J61A 2J60A 1N86C 2J3FA 1LT9B 2J3OA 2GY7A 1M1JB 1RE3C 2FIBA 1FZCB 2D39A 2Z4EB 2J3FD 2H43B 1LT9C
chains in the Genus database with same CATH topology
4JYOX 2J3UA 1FIBA 2OYIB 1M1JC 1FZCC 1RE3B 2HLOB 2J3GA 1FICA 4M7HA 1LTJB 3E1IB 4JZCA 2Z4EC 1RF0B 2H43C 2WNPF 2HODB 1FZFB 1FZBB 2OYIC 2J0HA 2J2PA 2HLOC 4R9JA 2JHLF 2J64A 1FZFC 1LWUB 2JHIF 1LTJC 2JHMF 3E1IC 1RF0C 2Q9IB 2HODC 2XNXB 1FZBC 4ZFGA 3HUSB 4NYTA 3H32B 1LWUC 2J61B 4R9TA 2J0YA 1FZDA 2Q9IC 1FZEB 2XNXC 3HUSC 1Z3UA 1FZGB 3H32C 1FZAB 1RE4B 1FZEC 1JC9A 4M7FA 1RF1B 2J0GA 1FIDA 1FZGC 2JHKF 1FZAC 1RE4C 3BVHB 2FFDB 1N73B 1RF1C 2OYHB 2JHHC 3GHGC 2HPCB 4EPUA 1Z3SA 1N86B 3FIBA 3BVHC 2FFDC 1N73C 2OYHC 2J1GA 2HPCC 2J5ZA 2J61A 2J60A 1N86C 2J3FA 1LT9B 2J3OA 2GY7A 1M1JB 1RE3C 2FIBA 1FZCB 2D39A 2Z4EB 2J3FD 2H43B 1LT9C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JYO X;  2J3U A;  1FIB A;  2OYI B;  1M1J C;  1FZC C;  1RE3 B;  2HLO B;  2J3G A;  1FIC A;  4M7H A;  1LTJ B;  3E1I B;  4JZC A;  2Z4E C;  1RF0 B;  2H43 C;  2WNP F;  2HOD B;  1FZF B;  1FZB B;  2OYI C;  2J0H A;  2J2P A;  2HLO C;  4R9J A;  2JHL F;  2J64 A;  1FZF C;  1LWU B;  2JHI F;  1LTJ C;  2JHM F;  3E1I C;  1RF0 C;  2Q9I B;  2HOD C;  2XNX B;  1FZB C;  4ZFG A;  3HUS B;  4NYT A;  3H32 B;  1LWU C;  2J61 B;  4R9T A;  2J0Y A;  1FZD A;  2Q9I C;  1FZE B;  2XNX C;  3HUS C;  1Z3U A;  1FZG B;  3H32 C;  1FZA B;  1RE4 B;  1FZE C;  1JC9 A;  4M7F A;  1RF1 B;  2J0G A;  1FID A;  1FZG C;  2JHK F;  1FZA C;  1RE4 C;  3BVH B;  2FFD B;  1N73 B;  1RF1 C;  2OYH B;  2JHH C;  3GHG C;  2HPC B;  4EPU A;  1Z3S A;  1N86 B;  3FIB A;  3BVH C;  2FFD C;  1N73 C;  2OYH C;  2J1G A;  2HPC C;  2J5Z A;  2J61 A;  2J60 A;  1N86 C;  2J3F A;  1LT9 B;  2J3O A;  2GY7 A;  1M1J B;  1RE3 C;  2FIB A;  1FZC B;  2D39 A;  2Z4E B;  2J3F D;  2H43 B;  1LT9 C; 
#chains in the Genus database with same CATH topology
 4JYO X;  2J3U A;  1FIB A;  2OYI B;  1M1J C;  1FZC C;  1RE3 B;  2HLO B;  2J3G A;  1FIC A;  4M7H A;  1LTJ B;  3E1I B;  4JZC A;  2Z4E C;  1RF0 B;  2H43 C;  2WNP F;  2HOD B;  1FZF B;  1FZB B;  2OYI C;  2J0H A;  2J2P A;  2HLO C;  4R9J A;  2JHL F;  2J64 A;  1FZF C;  1LWU B;  2JHI F;  1LTJ C;  2JHM F;  3E1I C;  1RF0 C;  2Q9I B;  2HOD C;  2XNX B;  1FZB C;  4ZFG A;  3HUS B;  4NYT A;  3H32 B;  1LWU C;  2J61 B;  4R9T A;  2J0Y A;  1FZD A;  2Q9I C;  1FZE B;  2XNX C;  3HUS C;  1Z3U A;  1FZG B;  3H32 C;  1FZA B;  1RE4 B;  1FZE C;  1JC9 A;  4M7F A;  1RF1 B;  2J0G A;  1FID A;  3GHG B;  1FZG C;  2JHK F;  1FZA C;  1RE4 C;  3BVH B;  2FFD B;  1N73 B;  1RF1 C;  2OYH B;  2JHH C;  3GHG C;  2HPC B;  4EPU A;  1Z3S A;  1N86 B;  3FIB A;  3BVH C;  2FFD C;  1N73 C;  2OYH C;  2J1G A;  2HPC C;  2J5Z A;  2J61 A;  2J60 A;  1N86 C;  2J3F A;  1LT9 B;  2J3O A;  2GY7 A;  1M1J B;  1RE3 C;  2FIB A;  1FZC B;  2D39 A;  2Z4E B;  2J3F D;  2H43 B;  1LT9 C; 
#chains in the Genus database with same CATH homology
 4JYO X;  2J3U A;  1FIB A;  2OYI B;  1M1J C;  1FZC C;  1RE3 B;  2HLO B;  2J3G A;  1FIC A;  4M7H A;  1LTJ B;  3E1I B;  4JZC A;  2Z4E C;  1RF0 B;  2H43 C;  2WNP F;  2HOD B;  1FZF B;  1FZB B;  2OYI C;  2J0H A;  2J2P A;  2HLO C;  4R9J A;  2JHL F;  2J64 A;  1FZF C;  1LWU B;  2JHI F;  1LTJ C;  2JHM F;  3E1I C;  1RF0 C;  2Q9I B;  2HOD C;  2XNX B;  1FZB C;  4ZFG A;  3HUS B;  4NYT A;  3H32 B;  1LWU C;  2J61 B;  4R9T A;  2J0Y A;  1FZD A;  2Q9I C;  1FZE B;  2XNX C;  3HUS C;  1Z3U A;  1FZG B;  3H32 C;  1FZA B;  1RE4 B;  1FZE C;  1JC9 A;  4M7F A;  1RF1 B;  2J0G A;  1FID A;  1FZG C;  2JHK F;  1FZA C;  1RE4 C;  3BVH B;  2FFD B;  1N73 B;  1RF1 C;  2OYH B;  2JHH C;  3GHG C;  2HPC B;  4EPU A;  1Z3S A;  1N86 B;  3FIB A;  3BVH C;  2FFD C;  1N73 C;  2OYH C;  2J1G A;  2HPC C;  2J5Z A;  2J61 A;  2J60 A;  1N86 C;  2J3F A;  1LT9 B;  2J3O A;  2GY7 A;  1M1J B;  1RE3 C;  2FIB A;  1FZC B;  2D39 A;  2Z4E B;  2J3F D;  2H43 B;  1LT9 C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...