2J64A

H-ficolin
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
211
structure length
211
Chain Sequence
GPRNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGVGHPYRRVRMMLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Insights Into the Innate Immune Recognition Specificities of L- and H-Ficolins.
pubmed doi rcsb
molecule tags Lectin
source organism Homo sapiens
molecule keywords FICOLIN-3
total genus 63
structure length 211
sequence length 211
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2006-09-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 2j64A01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 2j64A02
3BVHB 2J5ZA 1M1JC 2Q9IC 1N73B 2J3FA 4ZFGA 2J3UA 3H32C 1RE3C 2FFDB 1LT9C 2HPCC 2H43B 1FIDA 1LTJB 2Z4EB 2GY7A 2J60A 1FZDA 2HLOC 2J1GA 1FZGB 2OYIC 2JHHC 1FZEC 1FZFB 2J0YA 1RF1B 3BVHC 2J3FD 2J61A 2J0HA 2WNPF 1FZAB 1LWUB 2J3OA 3E1IB 4M7FA 1RF0B 4JYOX 4M7HA 2FFDC 2J2PA 2H43C 2JHKF 3HUSB 2Z4EC 2HODB 1Z3UA 2JHLF 1FZCB 2J61B 1FZFC 1RF1C 2OYHB 3H32B 2XNXB 1LWUC 1N73C 1RE4B 3E1IC 1FZBB 3HUSC 1LTJC 1N86B 2HODC 1FZEB 2J3GA 3GHGC 1FICA 1FZGC 2J64A 4R9JA 4EPUA 1JC9A 1M1JB 1FZCC 2Q9IB 2OYHC 1RE3B 1LT9B 2XNXC 2HPCB 1FZAC 4NYTA 1RE4C 1Z3SA 1RF0C 3FIBA 2FIBA 4JZCA 4R9TA 1FZBC 2D39A 2HLOB 2JHIF 2J0GA 2JHMF 2OYIB 1FIBA 1N86C
chains in the Genus database with same CATH superfamily
3BVHB 2J5ZA 1M1JC 2Q9IC 1N73B 2J3FA 4ZFGA 2J3UA 3H32C 1RE3C 2FFDB 1LT9C 2HPCC 2H43B 1FIDA 1LTJB 2Z4EB 2GY7A 2J60A 1FZDA 2HLOC 2J1GA 1FZGB 2OYIC 2JHHC 1FZEC 1FZFB 2J0YA 1RF1B 3BVHC 2J3FD 2J61A 2J0HA 2WNPF 1FZAB 1LWUB 2J3OA 3E1IB 4M7FA 1RF0B 4JYOX 4M7HA 2FFDC 2J2PA 2H43C 2JHKF 3HUSB 2Z4EC 2HODB 3GHGB 1Z3UA 2JHLF 1FZCB 2J61B 1FZFC 1RF1C 2OYHB 3H32B 2XNXB 1LWUC 1N73C 1RE4B 3E1IC 1FZBB 3HUSC 1LTJC 1N86B 2HODC 1FZEB 2J3GA 3GHGC 1FICA 1FZGC 2J64A 4R9JA 4EPUA 1JC9A 1M1JB 1FZCC 2Q9IB 2OYHC 1RE3B 1LT9B 2XNXC 2HPCB 1FZAC 4NYTA 1RE4C 1Z3SA 1RF0C 3FIBA 2FIBA 4JZCA 4R9TA 1FZBC 2D39A 2HLOB 2JHIF 2J0GA 2JHMF 2OYIB 1FIBA 1N86C
chains in the Genus database with same CATH topology
3BVHB 2J5ZA 1M1JC 2Q9IC 1N73B 2J3FA 4ZFGA 2J3UA 3H32C 1RE3C 2FFDB 1LT9C 2HPCC 2H43B 1FIDA 1LTJB 2Z4EB 2GY7A 2J60A 1FZDA 2HLOC 2J1GA 1FZGB 2OYIC 2JHHC 1FZEC 1FZFB 2J0YA 1RF1B 3BVHC 2J3FD 2J61A 2J0HA 2WNPF 1FZAB 1LWUB 2J3OA 3E1IB 4M7FA 1RF0B 4JYOX 4M7HA 2FFDC 2J2PA 2H43C 2JHKF 3HUSB 2Z4EC 2HODB 1Z3UA 2JHLF 1FZCB 2J61B 1FZFC 1RF1C 2OYHB 3H32B 2XNXB 1LWUC 1N73C 1RE4B 3E1IC 1FZBB 3HUSC 1LTJC 1N86B 2HODC 1FZEB 2J3GA 3GHGC 1FICA 1FZGC 2J64A 4R9JA 4EPUA 1JC9A 1M1JB 1FZCC 2Q9IB 2OYHC 1RE3B 1LT9B 2XNXC 2HPCB 1FZAC 4NYTA 1RE4C 1Z3SA 1RF0C 3FIBA 2FIBA 4JZCA 4R9TA 1FZBC 2D39A 2HLOB 2JHIF 2J0GA 2JHMF 2OYIB 1FIBA 1N86C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BVH B;  2J5Z A;  1M1J C;  2Q9I C;  1N73 B;  2J3F A;  4ZFG A;  2J3U A;  3H32 C;  1RE3 C;  2FFD B;  1LT9 C;  2HPC C;  2H43 B;  1FID A;  1LTJ B;  2Z4E B;  2GY7 A;  2J60 A;  1FZD A;  2HLO C;  2J1G A;  1FZG B;  2OYI C;  2JHH C;  1FZE C;  1FZF B;  2J0Y A;  1RF1 B;  3BVH C;  2J3F D;  2J61 A;  2J0H A;  2WNP F;  1FZA B;  1LWU B;  2J3O A;  3E1I B;  4M7F A;  1RF0 B;  4JYO X;  4M7H A;  2FFD C;  2J2P A;  2H43 C;  2JHK F;  3HUS B;  2Z4E C;  2HOD B;  1Z3U A;  2JHL F;  1FZC B;  2J61 B;  1FZF C;  1RF1 C;  2OYH B;  3H32 B;  2XNX B;  1LWU C;  1N73 C;  1RE4 B;  3E1I C;  1FZB B;  3HUS C;  1LTJ C;  1N86 B;  2HOD C;  1FZE B;  2J3G A;  3GHG C;  1FIC A;  1FZG C;  2J64 A;  4R9J A;  4EPU A;  1JC9 A;  1M1J B;  1FZC C;  2Q9I B;  2OYH C;  1RE3 B;  1LT9 B;  2XNX C;  2HPC B;  1FZA C;  4NYT A;  1RE4 C;  1Z3S A;  1RF0 C;  3FIB A;  2FIB A;  4JZC A;  4R9T A;  1FZB C;  2D39 A;  2HLO B;  2JHI F;  2J0G A;  2JHM F;  2OYI B;  1FIB A;  1N86 C; 
#chains in the Genus database with same CATH topology
 3BVH B;  2J5Z A;  1M1J C;  2Q9I C;  1N73 B;  2J3F A;  4ZFG A;  2J3U A;  3H32 C;  1RE3 C;  2FFD B;  1LT9 C;  2HPC C;  2H43 B;  1FID A;  1LTJ B;  2Z4E B;  2GY7 A;  2J60 A;  1FZD A;  2HLO C;  2J1G A;  1FZG B;  2OYI C;  2JHH C;  1FZE C;  1FZF B;  2J0Y A;  1RF1 B;  3BVH C;  2J3F D;  2J61 A;  2J0H A;  2WNP F;  1FZA B;  1LWU B;  2J3O A;  3E1I B;  4M7F A;  1RF0 B;  4JYO X;  4M7H A;  2FFD C;  2J2P A;  2H43 C;  2JHK F;  3HUS B;  2Z4E C;  2HOD B;  3GHG B;  1Z3U A;  2JHL F;  1FZC B;  2J61 B;  1FZF C;  1RF1 C;  2OYH B;  3H32 B;  2XNX B;  1LWU C;  1N73 C;  1RE4 B;  3E1I C;  1FZB B;  3HUS C;  1LTJ C;  1N86 B;  2HOD C;  1FZE B;  2J3G A;  3GHG C;  1FIC A;  1FZG C;  2J64 A;  4R9J A;  4EPU A;  1JC9 A;  1M1J B;  1FZC C;  2Q9I B;  2OYH C;  1RE3 B;  1LT9 B;  2XNX C;  2HPC B;  1FZA C;  4NYT A;  1RE4 C;  1Z3S A;  1RF0 C;  3FIB A;  2FIB A;  4JZC A;  4R9T A;  1FZB C;  2D39 A;  2HLO B;  2JHI F;  2J0G A;  2JHM F;  2OYI B;  1FIB A;  1N86 C; 
#chains in the Genus database with same CATH homology
 3BVH B;  2J5Z A;  1M1J C;  2Q9I C;  1N73 B;  2J3F A;  4ZFG A;  2J3U A;  3H32 C;  1RE3 C;  2FFD B;  1LT9 C;  2HPC C;  2H43 B;  1FID A;  1LTJ B;  2Z4E B;  2GY7 A;  2J60 A;  1FZD A;  2HLO C;  2J1G A;  1FZG B;  2OYI C;  2JHH C;  1FZE C;  1FZF B;  2J0Y A;  1RF1 B;  3BVH C;  2J3F D;  2J61 A;  2J0H A;  2WNP F;  1FZA B;  1LWU B;  2J3O A;  3E1I B;  4M7F A;  1RF0 B;  4JYO X;  4M7H A;  2FFD C;  2J2P A;  2H43 C;  2JHK F;  3HUS B;  2Z4E C;  2HOD B;  1Z3U A;  2JHL F;  1FZC B;  2J61 B;  1FZF C;  1RF1 C;  2OYH B;  3H32 B;  2XNX B;  1LWU C;  1N73 C;  1RE4 B;  3E1I C;  1FZB B;  3HUS C;  1LTJ C;  1N86 B;  2HOD C;  1FZE B;  2J3G A;  3GHG C;  1FIC A;  1FZG C;  2J64 A;  4R9J A;  4EPU A;  1JC9 A;  1M1J B;  1FZC C;  2Q9I B;  2OYH C;  1RE3 B;  1LT9 B;  2XNX C;  2HPC B;  1FZA C;  4NYT A;  1RE4 C;  1Z3S A;  1RF0 C;  3FIB A;  2FIB A;  4JZC A;  4R9T A;  1FZB C;  2D39 A;  2HLO B;  2JHI F;  2J0G A;  2JHM F;  2OYI B;  1FIB A;  1N86 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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