2Z4EC

Crystal structure of d-dimer from human fibrin complexed with gly-his-arg-pro-tyr-amide
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
292
structure length
292
Chain Sequence
THDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDITGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDNDKFEGNCAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWKTRWYSMKKTTMKIIPFNRLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Blood clotting
publication title Probing the beta-chain hole of fibrinogen with synthetic peptides that differ at their amino termini
pubmed doi rcsb
molecule keywords Fibrinogen alpha chain
total genus 89
structure length 292
sequence length 292
chains with identical sequence F
ec nomenclature
pdb deposition date 2007-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 2z4eC01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 2z4eC02
1LTJB 2OYHC 2JHHC 2Q9IB 1RE3B 1RF0B 2J3UA 2J1GA 1FICA 2WNPF 2OYIB 3HUSC 1FZGC 4EPUA 2H43B 1FZFB 2J0YA 4R9TA 1LWUC 1RE4C 2J61A 2J60A 3FIBA 1N86B 3H32C 1FZAB 2HPCB 1RF1B 3BVHB 2GY7A 1LT9B 1FZBB 1Z3UA 1M1JC 4JYOX 3HUSB 2JHLF 2Z4EB 3GHGC 4M7HA 1N73C 3E1IC 2HODB 2HLOB 1FZEC 2FIBA 3H32B 2J0HA 1FZCC 2JHIF 1FIDA 4JZCA 2FFDC 1RE3C 1RF0C 2OYHB 1M1JB 1JC9A 2J3FD 2XNXC 4NYTA 4M7FA 2JHKF 1Z3SA 1FZFC 2J3FA 2J61B 1FZGB 2D39A 2J2PA 4R9JA 1LWUB 1RE4B 3BVHC 1FZEB 2J64A 1FZCB 1LTJC 1FZDA 2FFDB 2Q9IC 2J5ZA 2XNXB 2OYIC 2Z4EC 2H43C 4ZFGA 2J3GA 1FIBA 2HODC 2HLOC 2JHMF 1N73B 3E1IB 1N86C 1FZAC 2J0GA 2HPCC 1RF1C 1LT9C 2J3OA 1FZBC
chains in the Genus database with same CATH superfamily
1LTJB 2OYHC 2JHHC 2Q9IB 1RE3B 1RF0B 2J3UA 2J1GA 1FICA 2WNPF 2OYIB 3HUSC 1FZGC 4EPUA 2H43B 1FZFB 2J0YA 4R9TA 1LWUC 1RE4C 2J61A 2J60A 3FIBA 1N86B 3H32C 1FZAB 2HPCB 1RF1B 3BVHB 2GY7A 1LT9B 1FZBB 1Z3UA 1M1JC 4JYOX 3HUSB 2JHLF 2Z4EB 3GHGC 4M7HA 1N73C 3E1IC 2HODB 2HLOB 1FZEC 2FIBA 3H32B 2J0HA 1FZCC 2JHIF 1FIDA 4JZCA 2FFDC 1RE3C 1RF0C 2OYHB 1M1JB 1JC9A 2J3FD 2XNXC 4NYTA 4M7FA 2JHKF 1Z3SA 1FZFC 2J3FA 2J61B 1FZGB 2D39A 3GHGB 2J2PA 4R9JA 1LWUB 1RE4B 3BVHC 1FZEB 2J64A 1FZCB 1LTJC 1FZDA 2FFDB 2Q9IC 2J5ZA 2XNXB 2OYIC 2Z4EC 2H43C 4ZFGA 2J3GA 1FIBA 2HODC 2HLOC 2JHMF 1N73B 3E1IB 1N86C 1FZAC 2J0GA 2HPCC 1RF1C 1LT9C 2J3OA 1FZBC
chains in the Genus database with same CATH topology
1LTJB 2OYHC 2JHHC 2Q9IB 1RE3B 1RF0B 2J3UA 2J1GA 1FICA 2WNPF 2OYIB 3HUSC 1FZGC 4EPUA 2H43B 1FZFB 2J0YA 4R9TA 1LWUC 1RE4C 2J61A 2J60A 3FIBA 1N86B 3H32C 1FZAB 2HPCB 1RF1B 3BVHB 2GY7A 1LT9B 1FZBB 1Z3UA 1M1JC 4JYOX 3HUSB 2JHLF 2Z4EB 3GHGC 4M7HA 1N73C 3E1IC 2HODB 2HLOB 1FZEC 2FIBA 3H32B 2J0HA 1FZCC 2JHIF 1FIDA 4JZCA 2FFDC 1RE3C 1RF0C 2OYHB 1M1JB 1JC9A 2J3FD 2XNXC 4NYTA 4M7FA 2JHKF 1Z3SA 1FZFC 2J3FA 2J61B 1FZGB 2D39A 2J2PA 4R9JA 1LWUB 1RE4B 3BVHC 1FZEB 2J64A 1FZCB 1LTJC 1FZDA 2FFDB 2Q9IC 2J5ZA 2XNXB 2OYIC 2Z4EC 2H43C 4ZFGA 2J3GA 1FIBA 2HODC 2HLOC 2JHMF 1N73B 3E1IB 1N86C 1FZAC 2J0GA 2HPCC 1RF1C 1LT9C 2J3OA 1FZBC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LTJ B;  2OYH C;  2JHH C;  2Q9I B;  1RE3 B;  1RF0 B;  2J3U A;  2J1G A;  1FIC A;  2WNP F;  2OYI B;  3HUS C;  1FZG C;  4EPU A;  2H43 B;  1FZF B;  2J0Y A;  4R9T A;  1LWU C;  1RE4 C;  2J61 A;  2J60 A;  3FIB A;  1N86 B;  3H32 C;  1FZA B;  2HPC B;  1RF1 B;  3BVH B;  2GY7 A;  1LT9 B;  1FZB B;  1Z3U A;  1M1J C;  4JYO X;  3HUS B;  2JHL F;  2Z4E B;  3GHG C;  4M7H A;  1N73 C;  3E1I C;  2HOD B;  2HLO B;  1FZE C;  2FIB A;  3H32 B;  2J0H A;  1FZC C;  2JHI F;  1FID A;  4JZC A;  2FFD C;  1RE3 C;  1RF0 C;  2OYH B;  1M1J B;  1JC9 A;  2J3F D;  2XNX C;  4NYT A;  4M7F A;  2JHK F;  1Z3S A;  1FZF C;  2J3F A;  2J61 B;  1FZG B;  2D39 A;  2J2P A;  4R9J A;  1LWU B;  1RE4 B;  3BVH C;  1FZE B;  2J64 A;  1FZC B;  1LTJ C;  1FZD A;  2FFD B;  2Q9I C;  2J5Z A;  2XNX B;  2OYI C;  2Z4E C;  2H43 C;  4ZFG A;  2J3G A;  1FIB A;  2HOD C;  2HLO C;  2JHM F;  1N73 B;  3E1I B;  1N86 C;  1FZA C;  2J0G A;  2HPC C;  1RF1 C;  1LT9 C;  2J3O A;  1FZB C; 
#chains in the Genus database with same CATH topology
 1LTJ B;  2OYH C;  2JHH C;  2Q9I B;  1RE3 B;  1RF0 B;  2J3U A;  2J1G A;  1FIC A;  2WNP F;  2OYI B;  3HUS C;  1FZG C;  4EPU A;  2H43 B;  1FZF B;  2J0Y A;  4R9T A;  1LWU C;  1RE4 C;  2J61 A;  2J60 A;  3FIB A;  1N86 B;  3H32 C;  1FZA B;  2HPC B;  1RF1 B;  3BVH B;  2GY7 A;  1LT9 B;  1FZB B;  1Z3U A;  1M1J C;  4JYO X;  3HUS B;  2JHL F;  2Z4E B;  3GHG C;  4M7H A;  1N73 C;  3E1I C;  2HOD B;  2HLO B;  1FZE C;  2FIB A;  3H32 B;  2J0H A;  1FZC C;  2JHI F;  1FID A;  4JZC A;  2FFD C;  1RE3 C;  1RF0 C;  2OYH B;  1M1J B;  1JC9 A;  2J3F D;  2XNX C;  4NYT A;  4M7F A;  2JHK F;  1Z3S A;  1FZF C;  2J3F A;  2J61 B;  1FZG B;  2D39 A;  3GHG B;  2J2P A;  4R9J A;  1LWU B;  1RE4 B;  3BVH C;  1FZE B;  2J64 A;  1FZC B;  1LTJ C;  1FZD A;  2FFD B;  2Q9I C;  2J5Z A;  2XNX B;  2OYI C;  2Z4E C;  2H43 C;  4ZFG A;  2J3G A;  1FIB A;  2HOD C;  2HLO C;  2JHM F;  1N73 B;  3E1I B;  1N86 C;  1FZA C;  2J0G A;  2HPC C;  1RF1 C;  1LT9 C;  2J3O A;  1FZB C; 
#chains in the Genus database with same CATH homology
 1LTJ B;  2OYH C;  2JHH C;  2Q9I B;  1RE3 B;  1RF0 B;  2J3U A;  2J1G A;  1FIC A;  2WNP F;  2OYI B;  3HUS C;  1FZG C;  4EPU A;  2H43 B;  1FZF B;  2J0Y A;  4R9T A;  1LWU C;  1RE4 C;  2J61 A;  2J60 A;  3FIB A;  1N86 B;  3H32 C;  1FZA B;  2HPC B;  1RF1 B;  3BVH B;  2GY7 A;  1LT9 B;  1FZB B;  1Z3U A;  1M1J C;  4JYO X;  3HUS B;  2JHL F;  2Z4E B;  3GHG C;  4M7H A;  1N73 C;  3E1I C;  2HOD B;  2HLO B;  1FZE C;  2FIB A;  3H32 B;  2J0H A;  1FZC C;  2JHI F;  1FID A;  4JZC A;  2FFD C;  1RE3 C;  1RF0 C;  2OYH B;  1M1J B;  1JC9 A;  2J3F D;  2XNX C;  4NYT A;  4M7F A;  2JHK F;  1Z3S A;  1FZF C;  2J3F A;  2J61 B;  1FZG B;  2D39 A;  2J2P A;  4R9J A;  1LWU B;  1RE4 B;  3BVH C;  1FZE B;  2J64 A;  1FZC B;  1LTJ C;  1FZD A;  2FFD B;  2Q9I C;  2J5Z A;  2XNX B;  2OYI C;  2Z4E C;  2H43 C;  4ZFG A;  2J3G A;  1FIB A;  2HOD C;  2HLO C;  2JHM F;  1N73 B;  3E1I B;  1N86 C;  1FZA C;  2J0G A;  2HPC C;  1RF1 C;  1LT9 C;  2J3O A;  1FZB C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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