2J3FA

L-ficolin complexed to n-acetyl-d-galactosamine
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
219
structure length
218
Chain Sequence
PQPCLTGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYNCHTSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
source organism Homo sapiens
publication title Structural Insights Into the Innate Immune Recognition Specificities of L- and H-Ficolins.
pubmed doi rcsb
molecule keywords FICOLIN-2
total genus 46
structure length 218
sequence length 219
chains with identical sequence B, C, E, F
ec nomenclature
pdb deposition date 2006-08-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 2j3fA01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 2j3fA02
1FIDA 1FZBB 2J3FD 2H43C 1FZGB 2HODB 2H43B 1LT9B 2HPCC 1RF1C 2HPCB 4JZCA 1FZAC 2J61B 2JHIF 1FZAB 2JHKF 1JC9A 3GHGC 3BVHB 1RE4C 2JHLF 1FZDA 2J0YA 1RE4B 2J3FA 2Z4EC 2J2PA 2J61A 3H32C 1FZCC 2WNPF 4R9TA 2JHHC 2Z4EB 3H32B 2D39A 1FZCB 2J0HA 1RF1B 2J1GA 2J3GA 1N73C 1Z3UA 1RE3C 3E1IC 4M7FA 1N73B 1RE3B 1FIBA 2J0GA 1Z3SA 1M1JC 2FFDC 1LTJC 2Q9IC 1FICA 2FIBA 2XNXC 1M1JB 2OYIC 2FFDB 1LTJB 2OYHC 2Q9IB 1FZEC 2OYIB 2OYHB 4JYOX 1FZEB 4M7HA 4NYTA 1LWUC 3HUSC 1RF0C 1LWUB 3HUSB 1FZFC 2HLOC 1FZFB 2HLOB 3E1IB 1LT9C 2J3OA 2J60A 3FIBA 4EPUA 4R9JA 2XNXB 4ZFGA 2JHMF 3BVHC 2GY7A 1N86C 2J3UA 1N86B 1RF0B 1FZBC 1FZGC 2J64A 2J5ZA 2HODC
chains in the Genus database with same CATH superfamily
1FIDA 1FZBB 2J3FD 2H43C 1FZGB 2HODB 2H43B 1LT9B 2HPCC 1RF1C 2HPCB 4JZCA 1FZAC 2J61B 2JHIF 1FZAB 2JHKF 1JC9A 3GHGC 3BVHB 1RE4C 2JHLF 1FZDA 3GHGB 2J0YA 1RE4B 2J3FA 2Z4EC 2J2PA 2J61A 3H32C 1FZCC 2WNPF 4R9TA 2JHHC 2Z4EB 3H32B 2D39A 1FZCB 2J0HA 1RF1B 2J1GA 2J3GA 1N73C 1Z3UA 1RE3C 3E1IC 4M7FA 1N73B 1RE3B 1FIBA 2J0GA 1Z3SA 1M1JC 2FFDC 1LTJC 2Q9IC 1FICA 2FIBA 2XNXC 1M1JB 2OYIC 2FFDB 1LTJB 2OYHC 2Q9IB 1FZEC 2OYIB 2OYHB 4JYOX 1FZEB 4M7HA 4NYTA 1LWUC 3HUSC 1RF0C 1LWUB 3HUSB 1FZFC 2HLOC 1FZFB 2HLOB 3E1IB 1LT9C 2J3OA 2J60A 3FIBA 4EPUA 4R9JA 2XNXB 4ZFGA 2JHMF 3BVHC 2GY7A 1N86C 2J3UA 1N86B 1RF0B 1FZBC 1FZGC 2J64A 2J5ZA 2HODC
chains in the Genus database with same CATH topology
1FIDA 1FZBB 2J3FD 2H43C 1FZGB 2HODB 2H43B 1LT9B 2HPCC 1RF1C 2HPCB 4JZCA 1FZAC 2J61B 2JHIF 1FZAB 2JHKF 1JC9A 3GHGC 3BVHB 1RE4C 2JHLF 1FZDA 2J0YA 1RE4B 2J3FA 2Z4EC 2J2PA 2J61A 3H32C 1FZCC 2WNPF 4R9TA 2JHHC 2Z4EB 3H32B 2D39A 1FZCB 2J0HA 1RF1B 2J1GA 2J3GA 1N73C 1Z3UA 1RE3C 3E1IC 4M7FA 1N73B 1RE3B 1FIBA 2J0GA 1Z3SA 1M1JC 2FFDC 1LTJC 2Q9IC 1FICA 2FIBA 2XNXC 1M1JB 2OYIC 2FFDB 1LTJB 2OYHC 2Q9IB 1FZEC 2OYIB 2OYHB 4JYOX 1FZEB 4M7HA 4NYTA 1LWUC 3HUSC 1RF0C 1LWUB 3HUSB 1FZFC 2HLOC 1FZFB 2HLOB 3E1IB 1LT9C 2J3OA 2J60A 3FIBA 4EPUA 4R9JA 2XNXB 4ZFGA 2JHMF 3BVHC 2GY7A 1N86C 2J3UA 1N86B 1RF0B 1FZBC 1FZGC 2J64A 2J5ZA 2HODC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FID A;  1FZB B;  2J3F D;  2H43 C;  1FZG B;  2HOD B;  2H43 B;  1LT9 B;  2HPC C;  1RF1 C;  2HPC B;  4JZC A;  1FZA C;  2J61 B;  2JHI F;  1FZA B;  2JHK F;  1JC9 A;  3GHG C;  3BVH B;  1RE4 C;  2JHL F;  1FZD A;  2J0Y A;  1RE4 B;  2J3F A;  2Z4E C;  2J2P A;  2J61 A;  3H32 C;  1FZC C;  2WNP F;  4R9T A;  2JHH C;  2Z4E B;  3H32 B;  2D39 A;  1FZC B;  2J0H A;  1RF1 B;  2J1G A;  2J3G A;  1N73 C;  1Z3U A;  1RE3 C;  3E1I C;  4M7F A;  1N73 B;  1RE3 B;  1FIB A;  2J0G A;  1Z3S A;  1M1J C;  2FFD C;  1LTJ C;  2Q9I C;  1FIC A;  2FIB A;  2XNX C;  1M1J B;  2OYI C;  2FFD B;  1LTJ B;  2OYH C;  2Q9I B;  1FZE C;  2OYI B;  2OYH B;  4JYO X;  1FZE B;  4M7H A;  4NYT A;  1LWU C;  3HUS C;  1RF0 C;  1LWU B;  3HUS B;  1FZF C;  2HLO C;  1FZF B;  2HLO B;  3E1I B;  1LT9 C;  2J3O A;  2J60 A;  3FIB A;  4EPU A;  4R9J A;  2XNX B;  4ZFG A;  2JHM F;  3BVH C;  2GY7 A;  1N86 C;  2J3U A;  1N86 B;  1RF0 B;  1FZB C;  1FZG C;  2J64 A;  2J5Z A;  2HOD C; 
#chains in the Genus database with same CATH topology
 1FID A;  1FZB B;  2J3F D;  2H43 C;  1FZG B;  2HOD B;  2H43 B;  1LT9 B;  2HPC C;  1RF1 C;  2HPC B;  4JZC A;  1FZA C;  2J61 B;  2JHI F;  1FZA B;  2JHK F;  1JC9 A;  3GHG C;  3BVH B;  1RE4 C;  2JHL F;  1FZD A;  3GHG B;  2J0Y A;  1RE4 B;  2J3F A;  2Z4E C;  2J2P A;  2J61 A;  3H32 C;  1FZC C;  2WNP F;  4R9T A;  2JHH C;  2Z4E B;  3H32 B;  2D39 A;  1FZC B;  2J0H A;  1RF1 B;  2J1G A;  2J3G A;  1N73 C;  1Z3U A;  1RE3 C;  3E1I C;  4M7F A;  1N73 B;  1RE3 B;  1FIB A;  2J0G A;  1Z3S A;  1M1J C;  2FFD C;  1LTJ C;  2Q9I C;  1FIC A;  2FIB A;  2XNX C;  1M1J B;  2OYI C;  2FFD B;  1LTJ B;  2OYH C;  2Q9I B;  1FZE C;  2OYI B;  2OYH B;  4JYO X;  1FZE B;  4M7H A;  4NYT A;  1LWU C;  3HUS C;  1RF0 C;  1LWU B;  3HUS B;  1FZF C;  2HLO C;  1FZF B;  2HLO B;  3E1I B;  1LT9 C;  2J3O A;  2J60 A;  3FIB A;  4EPU A;  4R9J A;  2XNX B;  4ZFG A;  2JHM F;  3BVH C;  2GY7 A;  1N86 C;  2J3U A;  1N86 B;  1RF0 B;  1FZB C;  1FZG C;  2J64 A;  2J5Z A;  2HOD C; 
#chains in the Genus database with same CATH homology
 1FID A;  1FZB B;  2J3F D;  2H43 C;  1FZG B;  2HOD B;  2H43 B;  1LT9 B;  2HPC C;  1RF1 C;  2HPC B;  4JZC A;  1FZA C;  2J61 B;  2JHI F;  1FZA B;  2JHK F;  1JC9 A;  3GHG C;  3BVH B;  1RE4 C;  2JHL F;  1FZD A;  2J0Y A;  1RE4 B;  2J3F A;  2Z4E C;  2J2P A;  2J61 A;  3H32 C;  1FZC C;  2WNP F;  4R9T A;  2JHH C;  2Z4E B;  3H32 B;  2D39 A;  1FZC B;  2J0H A;  1RF1 B;  2J1G A;  2J3G A;  1N73 C;  1Z3U A;  1RE3 C;  3E1I C;  4M7F A;  1N73 B;  1RE3 B;  1FIB A;  2J0G A;  1Z3S A;  1M1J C;  2FFD C;  1LTJ C;  2Q9I C;  1FIC A;  2FIB A;  2XNX C;  1M1J B;  2OYI C;  2FFD B;  1LTJ B;  2OYH C;  2Q9I B;  1FZE C;  2OYI B;  2OYH B;  4JYO X;  1FZE B;  4M7H A;  4NYT A;  1LWU C;  3HUS C;  1RF0 C;  1LWU B;  3HUS B;  1FZF C;  2HLO C;  1FZF B;  2HLO B;  3E1I B;  1LT9 C;  2J3O A;  2J60 A;  3FIB A;  4EPU A;  4R9J A;  2XNX B;  4ZFG A;  2JHM F;  3BVH C;  2GY7 A;  1N86 C;  2J3U A;  1N86 B;  1RF0 B;  1FZB C;  1FZG C;  2J64 A;  2J5Z A;  2HOD C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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