2J0GA

L-ficolin complexed to n-acetyl-mannosamine
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
212
structure length
212
Chain Sequence
GPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHTSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lectin
source organism Homo sapiens
publication title Structural Insights Into the Innate Immune Recognition Specificities of L- and H-Ficolins.
pubmed doi rcsb
molecule keywords FICOLIN-2
total genus 69
structure length 212
sequence length 212
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2006-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 2j0gA01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 2j0gA02
2XNXB 2HODC 2JHIF 2H43B 4R9JA 1LWUC 3H32B 1N73B 3GHGC 1FICA 1RE4B 2J3FD 2J1GA 4M7HA 4JZCA 1N86C 1M1JC 2FIBA 2Z4EC 2HLOC 1Z3UA 1FIDA 2J0HA 2XNXC 3HUSB 1FZBB 1LT9B 1RF0C 2OYIC 2FFDC 4NYTA 4M7FA 1FZAB 1RE4C 2J3UA 1FZEC 2J5ZA 4JYOX 2J61B 3BVHC 2J64A 1RE3B 3E1IC 4ZFGA 1LTJC 1FZGC 2JHLF 1RF1C 2J0GA 1FZCB 2Q9IB 2OYHC 2HPCB 2WNPF 2HODB 2H43C 3H32C 1LWUB 2JHKF 2J3OA 1FZDA 2J3FA 2J3GA 1N73C 1Z3SA 1M1JB 2Q9IC 2Z4EB 2HLOB 1FZFB 3HUSC 1FZBC 1LT9C 2JHHC 1RF0B 1FIBA 2OYIB 2J0YA 2FFDB 1FZAC 2GY7A 1JC9A 1FZEB 4EPUA 2D39A 1RE3C 3BVHB 3E1IB 1LTJB 1FZGB 2J60A 2J2PA 2JHMF 1N86B 4R9TA 1RF1B 1FZCC 1FZFC 2J61A 2OYHB 3FIBA 2HPCC
chains in the Genus database with same CATH superfamily
2XNXB 2HODC 2JHIF 2H43B 4R9JA 1LWUC 3H32B 1N73B 3GHGC 1FICA 1RE4B 2J3FD 2J1GA 4M7HA 4JZCA 1N86C 1M1JC 2FIBA 2Z4EC 2HLOC 1Z3UA 1FIDA 2J0HA 2XNXC 3HUSB 1FZBB 1LT9B 1RF0C 2OYIC 2FFDC 4NYTA 4M7FA 1FZAB 1RE4C 2J3UA 1FZEC 2J5ZA 4JYOX 2J61B 3BVHC 2J64A 1RE3B 3E1IC 4ZFGA 1LTJC 1FZGC 2JHLF 1RF1C 2J0GA 1FZCB 2Q9IB 2OYHC 2HPCB 2WNPF 2HODB 2H43C 3H32C 1LWUB 2JHKF 2J3OA 1FZDA 2J3FA 2J3GA 1N73C 1Z3SA 1M1JB 2Q9IC 2Z4EB 2HLOB 1FZFB 3HUSC 1FZBC 1LT9C 2JHHC 1RF0B 1FIBA 2OYIB 2J0YA 2FFDB 1FZAC 2GY7A 1JC9A 1FZEB 4EPUA 2D39A 3GHGB 1RE3C 3BVHB 3E1IB 1LTJB 1FZGB 2J60A 2J2PA 2JHMF 1N86B 4R9TA 1RF1B 1FZCC 1FZFC 2J61A 2OYHB 3FIBA 2HPCC
chains in the Genus database with same CATH topology
2XNXB 2HODC 2JHIF 2H43B 4R9JA 1LWUC 3H32B 1N73B 3GHGC 1FICA 1RE4B 2J3FD 2J1GA 4M7HA 4JZCA 1N86C 1M1JC 2FIBA 2Z4EC 2HLOC 1Z3UA 1FIDA 2J0HA 2XNXC 3HUSB 1FZBB 1LT9B 1RF0C 2OYIC 2FFDC 4NYTA 4M7FA 1FZAB 1RE4C 2J3UA 1FZEC 2J5ZA 4JYOX 2J61B 3BVHC 2J64A 1RE3B 3E1IC 4ZFGA 1LTJC 1FZGC 2JHLF 1RF1C 2J0GA 1FZCB 2Q9IB 2OYHC 2HPCB 2WNPF 2HODB 2H43C 3H32C 1LWUB 2JHKF 2J3OA 1FZDA 2J3FA 2J3GA 1N73C 1Z3SA 1M1JB 2Q9IC 2Z4EB 2HLOB 1FZFB 3HUSC 1FZBC 1LT9C 2JHHC 1RF0B 1FIBA 2OYIB 2J0YA 2FFDB 1FZAC 2GY7A 1JC9A 1FZEB 4EPUA 2D39A 1RE3C 3BVHB 3E1IB 1LTJB 1FZGB 2J60A 2J2PA 2JHMF 1N86B 4R9TA 1RF1B 1FZCC 1FZFC 2J61A 2OYHB 3FIBA 2HPCC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XNX B;  2HOD C;  2JHI F;  2H43 B;  4R9J A;  1LWU C;  3H32 B;  1N73 B;  3GHG C;  1FIC A;  1RE4 B;  2J3F D;  2J1G A;  4M7H A;  4JZC A;  1N86 C;  1M1J C;  2FIB A;  2Z4E C;  2HLO C;  1Z3U A;  1FID A;  2J0H A;  2XNX C;  3HUS B;  1FZB B;  1LT9 B;  1RF0 C;  2OYI C;  2FFD C;  4NYT A;  4M7F A;  1FZA B;  1RE4 C;  2J3U A;  1FZE C;  2J5Z A;  4JYO X;  2J61 B;  3BVH C;  2J64 A;  1RE3 B;  3E1I C;  4ZFG A;  1LTJ C;  1FZG C;  2JHL F;  1RF1 C;  2J0G A;  1FZC B;  2Q9I B;  2OYH C;  2HPC B;  2WNP F;  2HOD B;  2H43 C;  3H32 C;  1LWU B;  2JHK F;  2J3O A;  1FZD A;  2J3F A;  2J3G A;  1N73 C;  1Z3S A;  1M1J B;  2Q9I C;  2Z4E B;  2HLO B;  1FZF B;  3HUS C;  1FZB C;  1LT9 C;  2JHH C;  1RF0 B;  1FIB A;  2OYI B;  2J0Y A;  2FFD B;  1FZA C;  2GY7 A;  1JC9 A;  1FZE B;  4EPU A;  2D39 A;  1RE3 C;  3BVH B;  3E1I B;  1LTJ B;  1FZG B;  2J60 A;  2J2P A;  2JHM F;  1N86 B;  4R9T A;  1RF1 B;  1FZC C;  1FZF C;  2J61 A;  2OYH B;  3FIB A;  2HPC C; 
#chains in the Genus database with same CATH topology
 2XNX B;  2HOD C;  2JHI F;  2H43 B;  4R9J A;  1LWU C;  3H32 B;  1N73 B;  3GHG C;  1FIC A;  1RE4 B;  2J3F D;  2J1G A;  4M7H A;  4JZC A;  1N86 C;  1M1J C;  2FIB A;  2Z4E C;  2HLO C;  1Z3U A;  1FID A;  2J0H A;  2XNX C;  3HUS B;  1FZB B;  1LT9 B;  1RF0 C;  2OYI C;  2FFD C;  4NYT A;  4M7F A;  1FZA B;  1RE4 C;  2J3U A;  1FZE C;  2J5Z A;  4JYO X;  2J61 B;  3BVH C;  2J64 A;  1RE3 B;  3E1I C;  4ZFG A;  1LTJ C;  1FZG C;  2JHL F;  1RF1 C;  2J0G A;  1FZC B;  2Q9I B;  2OYH C;  2HPC B;  2WNP F;  2HOD B;  2H43 C;  3H32 C;  1LWU B;  2JHK F;  2J3O A;  1FZD A;  2J3F A;  2J3G A;  1N73 C;  1Z3S A;  1M1J B;  2Q9I C;  2Z4E B;  2HLO B;  1FZF B;  3HUS C;  1FZB C;  1LT9 C;  2JHH C;  1RF0 B;  1FIB A;  2OYI B;  2J0Y A;  2FFD B;  1FZA C;  2GY7 A;  1JC9 A;  1FZE B;  4EPU A;  2D39 A;  3GHG B;  1RE3 C;  3BVH B;  3E1I B;  1LTJ B;  1FZG B;  2J60 A;  2J2P A;  2JHM F;  1N86 B;  4R9T A;  1RF1 B;  1FZC C;  1FZF C;  2J61 A;  2OYH B;  3FIB A;  2HPC C; 
#chains in the Genus database with same CATH homology
 2XNX B;  2HOD C;  2JHI F;  2H43 B;  4R9J A;  1LWU C;  3H32 B;  1N73 B;  3GHG C;  1FIC A;  1RE4 B;  2J3F D;  2J1G A;  4M7H A;  4JZC A;  1N86 C;  1M1J C;  2FIB A;  2Z4E C;  2HLO C;  1Z3U A;  1FID A;  2J0H A;  2XNX C;  3HUS B;  1FZB B;  1LT9 B;  1RF0 C;  2OYI C;  2FFD C;  4NYT A;  4M7F A;  1FZA B;  1RE4 C;  2J3U A;  1FZE C;  2J5Z A;  4JYO X;  2J61 B;  3BVH C;  2J64 A;  1RE3 B;  3E1I C;  4ZFG A;  1LTJ C;  1FZG C;  2JHL F;  1RF1 C;  2J0G A;  1FZC B;  2Q9I B;  2OYH C;  2HPC B;  2WNP F;  2HOD B;  2H43 C;  3H32 C;  1LWU B;  2JHK F;  2J3O A;  1FZD A;  2J3F A;  2J3G A;  1N73 C;  1Z3S A;  1M1J B;  2Q9I C;  2Z4E B;  2HLO B;  1FZF B;  3HUS C;  1FZB C;  1LT9 C;  2JHH C;  1RF0 B;  1FIB A;  2OYI B;  2J0Y A;  2FFD B;  1FZA C;  2GY7 A;  1JC9 A;  1FZE B;  4EPU A;  2D39 A;  1RE3 C;  3BVH B;  3E1I B;  1LTJ B;  1FZG B;  2J60 A;  2J2P A;  2JHM F;  1N86 B;  4R9T A;  1RF1 B;  1FZC C;  1FZF C;  2J61 A;  2OYH B;  3FIB A;  2HPC C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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