1FZAB

Crystal structure of fibrinogen fragment d
Total Genus 80
5010015020025030001020304050607080
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
313
structure length
313
Chain Sequence
KHQLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRTPCTVSCNIPVVSGKECEEIIRKGGETSEMYLIQPDSSVKPYRVYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYCGLPGEYWLGNDKISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGASQLMGENRTMTIHNGMFFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGGQYTWDMAKHGTDDGVVWMNWKGSWYSMRKMSMKIRPFFPQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYS7 (308-315)AH3 (266-271)TIV2 (230-233)S4 (249-255)AH1 (162-193)TI1 (149-152)3H1 (156-159)O9 (153-182)TVIII1 (193-196)TVIII2 (228-231)TIV7 (255-258)O6 (201-286)S1 (207-208)AH2 (211-217)S2 (223-227)S3 (236-241)TIV3 (231-234)TIV6 (244-247)TIV4 (241-244)TIV8 (261-264)AH4 (296-304)S5 (273-274)TIV9 (280-283)S6 (292-293)TI2 (150-153)TIV1 (159-162)Updating...
connected with : NaN
molecule tags Blood coagulation
publication title Crystal structures of fragment D from human fibrinogen and its crosslinked counterpart from fibrin.
pubmed doi rcsb
molecule keywords FIBRINOGEN
total genus 80
structure length 313
sequence length 313
chains with identical sequence E
ec nomenclature
pdb deposition date 1997-08-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 1fzaB01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 1fzaB02
1LT9C 1FZAB 1LWUC 2J3OA 2H43B 1N86B 2J3GA 2H43C 2J3UA 1FIDA 3BVHB 2FFDB 1FICA 2J3FA 2XNXB 2J2PA 1RF0B 3BVHC 4R9TA 2J5ZA 2Z4EB 2XNXC 3HUSB 1LT9B 1RF0C 2OYHC 1RE4B 4JYOX 1LWUB 2Z4EC 2JHIF 3HUSC 1Z3UA 1RE4C 4R9JA 1Z3SA 4JZCA 1FZBC 1FIBA 2FIBA 2HODC 3E1IB 1JC9A 2GY7A 2JHLF 1FZCC 2J0HA 2JHMF 3E1IC 1FZFB 2OYHB 1FZFC 3GHGC 2J0GA 4M7HA 4EPUA 1FZBB 2HODB 1RE3C 1FZCB 2J61B 2J61A 2JHKF 2WNPF 1M1JC 1RF1C 2JHHC 1LTJB 2J0YA 4NYTA 3H32B 1N73B 2HLOB 2Q9IB 1FZEC 1LTJC 3H32C 1N73C 2HLOC 1RE3B 2Q9IC 1FZAC 2OYIB 2HPCB 4M7FA 1N86C 2OYIC 2HPCC 1FZGB 4ZFGA 1M1JB 2FFDC 1RF1B 2D39A 2J3FD 1FZGC 2J64A 1FZDA 1FZEB 3FIBA 2J1GA 2J60A
chains in the Genus database with same CATH superfamily
1LT9C 1FZAB 1LWUC 2J3OA 2H43B 1N86B 2J3GA 2H43C 2J3UA 1FIDA 3BVHB 2FFDB 1FICA 2J3FA 2XNXB 2J2PA 1RF0B 3BVHC 4R9TA 2J5ZA 2Z4EB 2XNXC 3HUSB 1LT9B 1RF0C 2OYHC 1RE4B 4JYOX 1LWUB 2Z4EC 2JHIF 3HUSC 1Z3UA 1RE4C 4R9JA 1Z3SA 4JZCA 1FZBC 1FIBA 2FIBA 2HODC 3E1IB 1JC9A 2GY7A 2JHLF 1FZCC 2J0HA 2JHMF 3E1IC 1FZFB 2OYHB 1FZFC 3GHGC 2J0GA 4M7HA 4EPUA 1FZBB 2HODB 1RE3C 1FZCB 2J61B 2J61A 2JHKF 2WNPF 3GHGB 1M1JC 1RF1C 2JHHC 1LTJB 2J0YA 4NYTA 3H32B 1N73B 2HLOB 2Q9IB 1FZEC 1LTJC 3H32C 1N73C 2HLOC 1RE3B 2Q9IC 1FZAC 2OYIB 2HPCB 4M7FA 1N86C 2OYIC 2HPCC 1FZGB 4ZFGA 1M1JB 2FFDC 1RF1B 2D39A 2J3FD 1FZGC 2J64A 1FZDA 1FZEB 3FIBA 2J1GA 2J60A
chains in the Genus database with same CATH topology
1LT9C 1FZAB 1LWUC 2J3OA 2H43B 1N86B 2J3GA 2H43C 2J3UA 1FIDA 3BVHB 2FFDB 1FICA 2J3FA 2XNXB 2J2PA 1RF0B 3BVHC 4R9TA 2J5ZA 2Z4EB 2XNXC 3HUSB 1LT9B 1RF0C 2OYHC 1RE4B 4JYOX 1LWUB 2Z4EC 2JHIF 3HUSC 1Z3UA 1RE4C 4R9JA 1Z3SA 4JZCA 1FZBC 1FIBA 2FIBA 2HODC 3E1IB 1JC9A 2GY7A 2JHLF 1FZCC 2J0HA 2JHMF 3E1IC 1FZFB 2OYHB 1FZFC 3GHGC 2J0GA 4M7HA 4EPUA 1FZBB 2HODB 1RE3C 1FZCB 2J61B 2J61A 2JHKF 2WNPF 1M1JC 1RF1C 2JHHC 1LTJB 2J0YA 4NYTA 3H32B 1N73B 2HLOB 2Q9IB 1FZEC 1LTJC 3H32C 1N73C 2HLOC 1RE3B 2Q9IC 1FZAC 2OYIB 2HPCB 4M7FA 1N86C 2OYIC 2HPCC 1FZGB 4ZFGA 1M1JB 2FFDC 1RF1B 2D39A 2J3FD 1FZGC 2J64A 1FZDA 1FZEB 3FIBA 2J1GA 2J60A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1LT9 C;  1FZA B;  1LWU C;  2J3O A;  2H43 B;  1N86 B;  2J3G A;  2H43 C;  2J3U A;  1FID A;  3BVH B;  2FFD B;  1FIC A;  2J3F A;  2XNX B;  2J2P A;  1RF0 B;  3BVH C;  4R9T A;  2J5Z A;  2Z4E B;  2XNX C;  3HUS B;  1LT9 B;  1RF0 C;  2OYH C;  1RE4 B;  4JYO X;  1LWU B;  2Z4E C;  2JHI F;  3HUS C;  1Z3U A;  1RE4 C;  4R9J A;  1Z3S A;  4JZC A;  1FZB C;  1FIB A;  2FIB A;  2HOD C;  3E1I B;  1JC9 A;  2GY7 A;  2JHL F;  1FZC C;  2J0H A;  2JHM F;  3E1I C;  1FZF B;  2OYH B;  1FZF C;  3GHG C;  2J0G A;  4M7H A;  4EPU A;  1FZB B;  2HOD B;  1RE3 C;  1FZC B;  2J61 B;  2J61 A;  2JHK F;  2WNP F;  1M1J C;  1RF1 C;  2JHH C;  1LTJ B;  2J0Y A;  4NYT A;  3H32 B;  1N73 B;  2HLO B;  2Q9I B;  1FZE C;  1LTJ C;  3H32 C;  1N73 C;  2HLO C;  1RE3 B;  2Q9I C;  1FZA C;  2OYI B;  2HPC B;  4M7F A;  1N86 C;  2OYI C;  2HPC C;  1FZG B;  4ZFG A;  1M1J B;  2FFD C;  1RF1 B;  2D39 A;  2J3F D;  1FZG C;  2J64 A;  1FZD A;  1FZE B;  3FIB A;  2J1G A;  2J60 A; 
#chains in the Genus database with same CATH topology
 1LT9 C;  1FZA B;  1LWU C;  2J3O A;  2H43 B;  1N86 B;  2J3G A;  2H43 C;  2J3U A;  1FID A;  3BVH B;  2FFD B;  1FIC A;  2J3F A;  2XNX B;  2J2P A;  1RF0 B;  3BVH C;  4R9T A;  2J5Z A;  2Z4E B;  2XNX C;  3HUS B;  1LT9 B;  1RF0 C;  2OYH C;  1RE4 B;  4JYO X;  1LWU B;  2Z4E C;  2JHI F;  3HUS C;  1Z3U A;  1RE4 C;  4R9J A;  1Z3S A;  4JZC A;  1FZB C;  1FIB A;  2FIB A;  2HOD C;  3E1I B;  1JC9 A;  2GY7 A;  2JHL F;  1FZC C;  2J0H A;  2JHM F;  3E1I C;  1FZF B;  2OYH B;  1FZF C;  3GHG C;  2J0G A;  4M7H A;  4EPU A;  1FZB B;  2HOD B;  1RE3 C;  1FZC B;  2J61 B;  2J61 A;  2JHK F;  2WNP F;  3GHG B;  1M1J C;  1RF1 C;  2JHH C;  1LTJ B;  2J0Y A;  4NYT A;  3H32 B;  1N73 B;  2HLO B;  2Q9I B;  1FZE C;  1LTJ C;  3H32 C;  1N73 C;  2HLO C;  1RE3 B;  2Q9I C;  1FZA C;  2OYI B;  2HPC B;  4M7F A;  1N86 C;  2OYI C;  2HPC C;  1FZG B;  4ZFG A;  1M1J B;  2FFD C;  1RF1 B;  2D39 A;  2J3F D;  1FZG C;  2J64 A;  1FZD A;  1FZE B;  3FIB A;  2J1G A;  2J60 A; 
#chains in the Genus database with same CATH homology
 1LT9 C;  1FZA B;  1LWU C;  2J3O A;  2H43 B;  1N86 B;  2J3G A;  2H43 C;  2J3U A;  1FID A;  3BVH B;  2FFD B;  1FIC A;  2J3F A;  2XNX B;  2J2P A;  1RF0 B;  3BVH C;  4R9T A;  2J5Z A;  2Z4E B;  2XNX C;  3HUS B;  1LT9 B;  1RF0 C;  2OYH C;  1RE4 B;  4JYO X;  1LWU B;  2Z4E C;  2JHI F;  3HUS C;  1Z3U A;  1RE4 C;  4R9J A;  1Z3S A;  4JZC A;  1FZB C;  1FIB A;  2FIB A;  2HOD C;  3E1I B;  1JC9 A;  2GY7 A;  2JHL F;  1FZC C;  2J0H A;  2JHM F;  3E1I C;  1FZF B;  2OYH B;  1FZF C;  3GHG C;  2J0G A;  4M7H A;  4EPU A;  1FZB B;  2HOD B;  1RE3 C;  1FZC B;  2J61 B;  2J61 A;  2JHK F;  2WNP F;  1M1J C;  1RF1 C;  2JHH C;  1LTJ B;  2J0Y A;  4NYT A;  3H32 B;  1N73 B;  2HLO B;  2Q9I B;  1FZE C;  1LTJ C;  3H32 C;  1N73 C;  2HLO C;  1RE3 B;  2Q9I C;  1FZA C;  2OYI B;  2HPC B;  4M7F A;  1N86 C;  2OYI C;  2HPC C;  1FZG B;  4ZFG A;  1M1J B;  2FFD C;  1RF1 B;  2D39 A;  2J3F D;  1FZG C;  2J64 A;  1FZD A;  1FZE B;  3FIB A;  2J1G A;  2J60 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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