2J0GA

L-ficolin complexed to n-acetyl-mannosamine
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
212
structure length
212
Chain Sequence
GPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHTSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Insights Into the Innate Immune Recognition Specificities of L- and H-Ficolins.
pubmed doi rcsb
molecule tags Lectin
source organism Homo sapiens
molecule keywords FICOLIN-2
total genus 69
structure length 212
sequence length 212
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2006-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 2j0gA01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 2j0gA02
2GY7A 1N86C 2HPCB 2OYIC 2HPCC 4NYTA 1Z3SA 2HODB 2HODC 1M1JB 1LWUB 2JHKF 4JZCA 1M1JC 1LWUC 1RE3B 2FIBA 1RE4B 2OYHB 2J3OA 1FZGB 1FIBA 1RE3C 1LT9B 1JC9A 1RE4C 2OYHC 1FZGC 2Q9IB 2J3GA 2HLOB 2H43B 2XNXB 1FZBB 2WNPF 2JHIF 2HLOC 4R9TA 2H43C 2XNXC 1FIDA 1FZBC 2J1GA 2J61A 4R9JA 3GHGC 3BVHB 4M7FA 2J0GA 3FIBA 3BVHC 2J61B 2J0HA 3H32B 4JYOX 3H32C 1FZCB 4M7HA 1LT9C 1FZCC 1FZEB 2Q9IC 3HUSB 2FFDB 1FZEC 1LTJB 2J3UA 3HUSC 1FZFB 2FFDC 2J3FA 1LTJC 1FICA 2J60A 1FZFC 1FZAB 1N73B 1FZAC 4ZFGA 2JHMF 2J0YA 2Z4EB 1N73C 2JHLF 2JHHC 1RF1B 2Z4EC 2J3FD 1RF1C 1RF0B 2J2PA 1Z3UA 2D39A 3E1IB 1RF0C 2J5ZA 3E1IC 1FZDA 2J64A 1N86B 2OYIB 4EPUA
chains in the Genus database with same CATH superfamily
2GY7A 1N86C 2HPCB 2OYIC 2HPCC 4NYTA 1Z3SA 2HODB 2HODC 1M1JB 1LWUB 2JHKF 4JZCA 1M1JC 1LWUC 1RE3B 2FIBA 1RE4B 2OYHB 2J3OA 1FZGB 1FIBA 1RE3C 1LT9B 1JC9A 1RE4C 2OYHC 1FZGC 2Q9IB 2J3GA 2HLOB 2H43B 2XNXB 1FZBB 2WNPF 2JHIF 2HLOC 4R9TA 3GHGB 2H43C 2XNXC 1FIDA 1FZBC 2J1GA 2J61A 4R9JA 3GHGC 3BVHB 4M7FA 2J0GA 3FIBA 3BVHC 2J61B 2J0HA 3H32B 4JYOX 3H32C 1FZCB 4M7HA 1LT9C 1FZCC 1FZEB 2Q9IC 3HUSB 2FFDB 1FZEC 1LTJB 2J3UA 3HUSC 1FZFB 2FFDC 2J3FA 1LTJC 1FICA 2J60A 1FZFC 1FZAB 1N73B 1FZAC 4ZFGA 2JHMF 2J0YA 2Z4EB 1N73C 2JHLF 2JHHC 1RF1B 2Z4EC 2J3FD 1RF1C 1RF0B 2J2PA 1Z3UA 2D39A 3E1IB 1RF0C 2J5ZA 3E1IC 1FZDA 2J64A 1N86B 2OYIB 4EPUA
chains in the Genus database with same CATH topology
2GY7A 1N86C 2HPCB 2OYIC 2HPCC 4NYTA 1Z3SA 2HODB 2HODC 1M1JB 1LWUB 2JHKF 4JZCA 1M1JC 1LWUC 1RE3B 2FIBA 1RE4B 2OYHB 2J3OA 1FZGB 1FIBA 1RE3C 1LT9B 1JC9A 1RE4C 2OYHC 1FZGC 2Q9IB 2J3GA 2HLOB 2H43B 2XNXB 1FZBB 2WNPF 2JHIF 2HLOC 4R9TA 2H43C 2XNXC 1FIDA 1FZBC 2J1GA 2J61A 4R9JA 3GHGC 3BVHB 4M7FA 2J0GA 3FIBA 3BVHC 2J61B 2J0HA 3H32B 4JYOX 3H32C 1FZCB 4M7HA 1LT9C 1FZCC 1FZEB 2Q9IC 3HUSB 2FFDB 1FZEC 1LTJB 2J3UA 3HUSC 1FZFB 2FFDC 2J3FA 1LTJC 1FICA 2J60A 1FZFC 1FZAB 1N73B 1FZAC 4ZFGA 2JHMF 2J0YA 2Z4EB 1N73C 2JHLF 2JHHC 1RF1B 2Z4EC 2J3FD 1RF1C 1RF0B 2J2PA 1Z3UA 2D39A 3E1IB 1RF0C 2J5ZA 3E1IC 1FZDA 2J64A 1N86B 2OYIB 4EPUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GY7 A;  1N86 C;  2HPC B;  2OYI C;  2HPC C;  4NYT A;  1Z3S A;  2HOD B;  2HOD C;  1M1J B;  1LWU B;  2JHK F;  4JZC A;  1M1J C;  1LWU C;  1RE3 B;  2FIB A;  1RE4 B;  2OYH B;  2J3O A;  1FZG B;  1FIB A;  1RE3 C;  1LT9 B;  1JC9 A;  1RE4 C;  2OYH C;  1FZG C;  2Q9I B;  2J3G A;  2HLO B;  2H43 B;  2XNX B;  1FZB B;  2WNP F;  2JHI F;  2HLO C;  4R9T A;  2H43 C;  2XNX C;  1FID A;  1FZB C;  2J1G A;  2J61 A;  4R9J A;  3GHG C;  3BVH B;  4M7F A;  2J0G A;  3FIB A;  3BVH C;  2J61 B;  2J0H A;  3H32 B;  4JYO X;  3H32 C;  1FZC B;  4M7H A;  1LT9 C;  1FZC C;  1FZE B;  2Q9I C;  3HUS B;  2FFD B;  1FZE C;  1LTJ B;  2J3U A;  3HUS C;  1FZF B;  2FFD C;  2J3F A;  1LTJ C;  1FIC A;  2J60 A;  1FZF C;  1FZA B;  1N73 B;  1FZA C;  4ZFG A;  2JHM F;  2J0Y A;  2Z4E B;  1N73 C;  2JHL F;  2JHH C;  1RF1 B;  2Z4E C;  2J3F D;  1RF1 C;  1RF0 B;  2J2P A;  1Z3U A;  2D39 A;  3E1I B;  1RF0 C;  2J5Z A;  3E1I C;  1FZD A;  2J64 A;  1N86 B;  2OYI B;  4EPU A; 
#chains in the Genus database with same CATH topology
 2GY7 A;  1N86 C;  2HPC B;  2OYI C;  2HPC C;  4NYT A;  1Z3S A;  2HOD B;  2HOD C;  1M1J B;  1LWU B;  2JHK F;  4JZC A;  1M1J C;  1LWU C;  1RE3 B;  2FIB A;  1RE4 B;  2OYH B;  2J3O A;  1FZG B;  1FIB A;  1RE3 C;  1LT9 B;  1JC9 A;  1RE4 C;  2OYH C;  1FZG C;  2Q9I B;  2J3G A;  2HLO B;  2H43 B;  2XNX B;  1FZB B;  2WNP F;  2JHI F;  2HLO C;  4R9T A;  3GHG B;  2H43 C;  2XNX C;  1FID A;  1FZB C;  2J1G A;  2J61 A;  4R9J A;  3GHG C;  3BVH B;  4M7F A;  2J0G A;  3FIB A;  3BVH C;  2J61 B;  2J0H A;  3H32 B;  4JYO X;  3H32 C;  1FZC B;  4M7H A;  1LT9 C;  1FZC C;  1FZE B;  2Q9I C;  3HUS B;  2FFD B;  1FZE C;  1LTJ B;  2J3U A;  3HUS C;  1FZF B;  2FFD C;  2J3F A;  1LTJ C;  1FIC A;  2J60 A;  1FZF C;  1FZA B;  1N73 B;  1FZA C;  4ZFG A;  2JHM F;  2J0Y A;  2Z4E B;  1N73 C;  2JHL F;  2JHH C;  1RF1 B;  2Z4E C;  2J3F D;  1RF1 C;  1RF0 B;  2J2P A;  1Z3U A;  2D39 A;  3E1I B;  1RF0 C;  2J5Z A;  3E1I C;  1FZD A;  2J64 A;  1N86 B;  2OYI B;  4EPU A; 
#chains in the Genus database with same CATH homology
 2GY7 A;  1N86 C;  2HPC B;  2OYI C;  2HPC C;  4NYT A;  1Z3S A;  2HOD B;  2HOD C;  1M1J B;  1LWU B;  2JHK F;  4JZC A;  1M1J C;  1LWU C;  1RE3 B;  2FIB A;  1RE4 B;  2OYH B;  2J3O A;  1FZG B;  1FIB A;  1RE3 C;  1LT9 B;  1JC9 A;  1RE4 C;  2OYH C;  1FZG C;  2Q9I B;  2J3G A;  2HLO B;  2H43 B;  2XNX B;  1FZB B;  2WNP F;  2JHI F;  2HLO C;  4R9T A;  2H43 C;  2XNX C;  1FID A;  1FZB C;  2J1G A;  2J61 A;  4R9J A;  3GHG C;  3BVH B;  4M7F A;  2J0G A;  3FIB A;  3BVH C;  2J61 B;  2J0H A;  3H32 B;  4JYO X;  3H32 C;  1FZC B;  4M7H A;  1LT9 C;  1FZC C;  1FZE B;  2Q9I C;  3HUS B;  2FFD B;  1FZE C;  1LTJ B;  2J3U A;  3HUS C;  1FZF B;  2FFD C;  2J3F A;  1LTJ C;  1FIC A;  2J60 A;  1FZF C;  1FZA B;  1N73 B;  1FZA C;  4ZFG A;  2JHM F;  2J0Y A;  2Z4E B;  1N73 C;  2JHL F;  2JHH C;  1RF1 B;  2Z4E C;  2J3F D;  1RF1 C;  1RF0 B;  2J2P A;  1Z3U A;  2D39 A;  3E1I B;  1RF0 C;  2J5Z A;  3E1I C;  1FZD A;  2J64 A;  1N86 B;  2OYI B;  4EPU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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