2J0YA

L-ficolin complexed to b-1,3-d-glucan
Total Genus 61
204060801001201401601800102030405060
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
214
structure length
193
Chain Sequence
TGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTSELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDCAVMFQGAWWYNCHTSNLNGRYLRGINWKSGNYSYKVSEMKVRPA
2040608010012014016018015010050
0102030405060Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
AH1 (80-86)EMPTYO5 (73-101)S2 (103-109)3H1 (190-192)O3 (80-108)S8 (185-187)S1 (92-97)S7 (177-182)TI1 (98-101)TVIII1 (182-185)S3 (117-123)TIV1 (109-112)TIV2 (111-114)TI'1 (112-115)TI2 (143-146)TIV3 (123-126)AH3 (152-159)S4 (141-142)S5 (148-149)S6 (165-171)TI3 (172-175)AH2 (134-139)Updating...
connected with : NaN
molecule tags Lectin
source organism Homo sapiens
publication title Structural Insights Into the Innate Immune Recognition Specificities of L- and H-Ficolins.
pubmed doi rcsb
molecule keywords FICOLIN-2
total genus 61
structure length 193
sequence length 214
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2006-08-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 2j0yA01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 2j0yA02
2J0YA 2J0HA 2J61B 2J61A 2H43C 3BVHC 1FZGC 3HUSB 2OYIB 1LTJB 3GHGC 1FZEB 2FIBA 2J2PA 2JHMF 4M7FA 2D39A 1RE4C 4EPUA 1FZDA 1FZCB 1RF1B 2Z4EC 2HODC 2HPCC 2GY7A 1FZFC 1N73C 2JHHC 1RE3C 2J3UA 3H32B 2FFDB 1LT9C 2Q9IB 2J3GA 1M1JB 1LTJC 3E1IB 1FZBC 1JC9A 2HLOC 2J60A 2J1GA 2J0GA 2OYHB 1LWUB 2WNPF 1FZAB 3BVHB 1Z3SA 2J3FA 1FIBA 4JYOX 2J64A 2JHLF 3FIBA 1RF0B 2FFDC 1N86B 3HUSC 2OYIC 2J3OA 3E1IC 2Z4EB 1FZEC 2HODB 2XNXB 1Z3UA 4NYTA 1N73B 4R9JA 1FZCC 1RF1C 1RE3B 2H43B 4R9TA 1LWUC 1LT9B 1FZGB 1FZAC 4JZCA 1FIDA 1FZBB 4ZFGA 3H32C 2HLOB 2JHIF 1RF0C 2J5ZA 1N86C 2Q9IC 1RE4B 4M7HA 1M1JC 2J3FD 2JHKF 2HPCB 2XNXC 1FZFB 2OYHC 1FICA
chains in the Genus database with same CATH superfamily
2J0YA 2J0HA 2J61B 2J61A 2H43C 3BVHC 1FZGC 3HUSB 2OYIB 1LTJB 3GHGC 1FZEB 2FIBA 2J2PA 2JHMF 4M7FA 2D39A 1RE4C 4EPUA 1FZDA 1FZCB 1RF1B 2Z4EC 2HODC 2HPCC 2GY7A 1FZFC 1N73C 2JHHC 1RE3C 2J3UA 3H32B 2FFDB 1LT9C 2Q9IB 2J3GA 1M1JB 1LTJC 3E1IB 1FZBC 1JC9A 2HLOC 2J60A 2J1GA 2J0GA 2OYHB 1LWUB 2WNPF 1FZAB 3BVHB 1Z3SA 3GHGB 2J3FA 1FIBA 4JYOX 2J64A 2JHLF 3FIBA 1RF0B 2FFDC 1N86B 3HUSC 2OYIC 2J3OA 3E1IC 2Z4EB 1FZEC 2HODB 2XNXB 1Z3UA 4NYTA 1N73B 4R9JA 1FZCC 1RF1C 1RE3B 2H43B 4R9TA 1LWUC 1LT9B 1FZGB 1FZAC 4JZCA 1FIDA 1FZBB 4ZFGA 3H32C 2HLOB 2JHIF 1RF0C 2J5ZA 1N86C 2Q9IC 1RE4B 4M7HA 1M1JC 2J3FD 2JHKF 2HPCB 2XNXC 1FZFB 2OYHC 1FICA
chains in the Genus database with same CATH topology
2J0YA 2J0HA 2J61B 2J61A 2H43C 3BVHC 1FZGC 3HUSB 2OYIB 1LTJB 3GHGC 1FZEB 2FIBA 2J2PA 2JHMF 4M7FA 2D39A 1RE4C 4EPUA 1FZDA 1FZCB 1RF1B 2Z4EC 2HODC 2HPCC 2GY7A 1FZFC 1N73C 2JHHC 1RE3C 2J3UA 3H32B 2FFDB 1LT9C 2Q9IB 2J3GA 1M1JB 1LTJC 3E1IB 1FZBC 1JC9A 2HLOC 2J60A 2J1GA 2J0GA 2OYHB 1LWUB 2WNPF 1FZAB 3BVHB 1Z3SA 2J3FA 1FIBA 4JYOX 2J64A 2JHLF 3FIBA 1RF0B 2FFDC 1N86B 3HUSC 2OYIC 2J3OA 3E1IC 2Z4EB 1FZEC 2HODB 2XNXB 1Z3UA 4NYTA 1N73B 4R9JA 1FZCC 1RF1C 1RE3B 2H43B 4R9TA 1LWUC 1LT9B 1FZGB 1FZAC 4JZCA 1FIDA 1FZBB 4ZFGA 3H32C 2HLOB 2JHIF 1RF0C 2J5ZA 1N86C 2Q9IC 1RE4B 4M7HA 1M1JC 2J3FD 2JHKF 2HPCB 2XNXC 1FZFB 2OYHC 1FICA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2J0Y A;  2J0H A;  2J61 B;  2J61 A;  2H43 C;  3BVH C;  1FZG C;  3HUS B;  2OYI B;  1LTJ B;  3GHG C;  1FZE B;  2FIB A;  2J2P A;  2JHM F;  4M7F A;  2D39 A;  1RE4 C;  4EPU A;  1FZD A;  1FZC B;  1RF1 B;  2Z4E C;  2HOD C;  2HPC C;  2GY7 A;  1FZF C;  1N73 C;  2JHH C;  1RE3 C;  2J3U A;  3H32 B;  2FFD B;  1LT9 C;  2Q9I B;  2J3G A;  1M1J B;  1LTJ C;  3E1I B;  1FZB C;  1JC9 A;  2HLO C;  2J60 A;  2J1G A;  2J0G A;  2OYH B;  1LWU B;  2WNP F;  1FZA B;  3BVH B;  1Z3S A;  2J3F A;  1FIB A;  4JYO X;  2J64 A;  2JHL F;  3FIB A;  1RF0 B;  2FFD C;  1N86 B;  3HUS C;  2OYI C;  2J3O A;  3E1I C;  2Z4E B;  1FZE C;  2HOD B;  2XNX B;  1Z3U A;  4NYT A;  1N73 B;  4R9J A;  1FZC C;  1RF1 C;  1RE3 B;  2H43 B;  4R9T A;  1LWU C;  1LT9 B;  1FZG B;  1FZA C;  4JZC A;  1FID A;  1FZB B;  4ZFG A;  3H32 C;  2HLO B;  2JHI F;  1RF0 C;  2J5Z A;  1N86 C;  2Q9I C;  1RE4 B;  4M7H A;  1M1J C;  2J3F D;  2JHK F;  2HPC B;  2XNX C;  1FZF B;  2OYH C;  1FIC A; 
#chains in the Genus database with same CATH topology
 2J0Y A;  2J0H A;  2J61 B;  2J61 A;  2H43 C;  3BVH C;  1FZG C;  3HUS B;  2OYI B;  1LTJ B;  3GHG C;  1FZE B;  2FIB A;  2J2P A;  2JHM F;  4M7F A;  2D39 A;  1RE4 C;  4EPU A;  1FZD A;  1FZC B;  1RF1 B;  2Z4E C;  2HOD C;  2HPC C;  2GY7 A;  1FZF C;  1N73 C;  2JHH C;  1RE3 C;  2J3U A;  3H32 B;  2FFD B;  1LT9 C;  2Q9I B;  2J3G A;  1M1J B;  1LTJ C;  3E1I B;  1FZB C;  1JC9 A;  2HLO C;  2J60 A;  2J1G A;  2J0G A;  2OYH B;  1LWU B;  2WNP F;  1FZA B;  3BVH B;  1Z3S A;  3GHG B;  2J3F A;  1FIB A;  4JYO X;  2J64 A;  2JHL F;  3FIB A;  1RF0 B;  2FFD C;  1N86 B;  3HUS C;  2OYI C;  2J3O A;  3E1I C;  2Z4E B;  1FZE C;  2HOD B;  2XNX B;  1Z3U A;  4NYT A;  1N73 B;  4R9J A;  1FZC C;  1RF1 C;  1RE3 B;  2H43 B;  4R9T A;  1LWU C;  1LT9 B;  1FZG B;  1FZA C;  4JZC A;  1FID A;  1FZB B;  4ZFG A;  3H32 C;  2HLO B;  2JHI F;  1RF0 C;  2J5Z A;  1N86 C;  2Q9I C;  1RE4 B;  4M7H A;  1M1J C;  2J3F D;  2JHK F;  2HPC B;  2XNX C;  1FZF B;  2OYH C;  1FIC A; 
#chains in the Genus database with same CATH homology
 2J0Y A;  2J0H A;  2J61 B;  2J61 A;  2H43 C;  3BVH C;  1FZG C;  3HUS B;  2OYI B;  1LTJ B;  3GHG C;  1FZE B;  2FIB A;  2J2P A;  2JHM F;  4M7F A;  2D39 A;  1RE4 C;  4EPU A;  1FZD A;  1FZC B;  1RF1 B;  2Z4E C;  2HOD C;  2HPC C;  2GY7 A;  1FZF C;  1N73 C;  2JHH C;  1RE3 C;  2J3U A;  3H32 B;  2FFD B;  1LT9 C;  2Q9I B;  2J3G A;  1M1J B;  1LTJ C;  3E1I B;  1FZB C;  1JC9 A;  2HLO C;  2J60 A;  2J1G A;  2J0G A;  2OYH B;  1LWU B;  2WNP F;  1FZA B;  3BVH B;  1Z3S A;  2J3F A;  1FIB A;  4JYO X;  2J64 A;  2JHL F;  3FIB A;  1RF0 B;  2FFD C;  1N86 B;  3HUS C;  2OYI C;  2J3O A;  3E1I C;  2Z4E B;  1FZE C;  2HOD B;  2XNX B;  1Z3U A;  4NYT A;  1N73 B;  4R9J A;  1FZC C;  1RF1 C;  1RE3 B;  2H43 B;  4R9T A;  1LWU C;  1LT9 B;  1FZG B;  1FZA C;  4JZC A;  1FID A;  1FZB B;  4ZFG A;  3H32 C;  2HLO B;  2JHI F;  1RF0 C;  2J5Z A;  1N86 C;  2Q9I C;  1RE4 B;  4M7H A;  1M1J C;  2J3F D;  2JHK F;  2HPC B;  2XNX C;  1FZF B;  2OYH C;  1FIC A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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