2J3UA

L-ficolin complexed to galactose
Total Genus 68

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
217
structure length
217
Chain Sequence
PCLTGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHTSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS8 (185-187)AH1 (80-85)S3 (117-123)O3 (80-108)TI'1 (112-115)S1 (92-97)TIV9 (213-216)TIV3 (109-112)3H1 (211-213)S2 (103-109)TI3 (204-207)TIV8 (208-211)AH2 (134-139)S10 (201-203)TIV4 (111-114)TIV5 (123-126)S6 (164-172)S9 (196-198)S4 (141-142)TI1 (143-146)S7 (176-182)S5 (148-149)AH3 (152-160)TI2 (172-175)TIV6 (189-192)TII1 (190-193)TIV7 (192-195)O5 (73-101)TIV2 (98-101)TIV1 (73-76)Updating...
connected with : NaN
publication title Structural Insights Into the Innate Immune Recognition Specificities of L- and H-Ficolins.
pubmed doi rcsb
molecule keywords FICOLIN-2
molecule tags Sugar binding protein
source organism Homo sapiens
total genus 68
structure length 217
sequence length 217
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2006-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 2j3uA01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 2j3uA02
1N86C 1RF0C 2FFDB 2Z4EB 2J3GA 2J3FD 2HPCB 3H32B 1N73B 2OYIC 1FZGC 2J3OA 2HODC 1M1JB 2J0GA 2FFDC 2XNXB 2WNPF 2Z4EC 1FIBA 1Z3SA 2JHMF 2JHLF 1N73C 4M7FA 3HUSB 1FZAB 4M7HA 1LTJB 2JHHC 3GHGC 2XNXC 4R9TA 2H43C 3BVHB 2J1GA 2J61B 2J64A 2JHIF 4EPUA 1LTJC 1Z3UA 2OYHB 4NYTA 4ZFGA 2HPCC 3H32C 2FIBA 1FZFB 2Q9IB 1LWUB 3BVHC 1FZDA 1FZCB 3E1IB 2J2PA 2HLOB 1LT9B 1M1JC 1FZBB 3FIBA 2Q9IC 1FZFC 1FZEB 4R9JA 1FZCC 2J0YA 1N86B 3HUSC 1RF0B 2HLOC 1FZAC 1LT9C 1RE3B 2OYIB 1FZBC 1JC9A 4JZCA 2J60A 2J5ZA 2JHKF 1RE3C 2D39A 1RE4B 1RF1B 2OYHC 1LWUC 2J3FA 3E1IC 2J3UA 2GY7A 2J61A 1FZGB 2H43B 2J0HA 1RE4C 1FICA 4JYOX 1RF1C 1FIDA 2HODB 1FZEC
chains in the Genus database with same CATH superfamily
1N86C 1RF0C 2FFDB 2Z4EB 2J3GA 2J3FD 2HPCB 3H32B 1N73B 2OYIC 1FZGC 2J3OA 2HODC 1M1JB 3GHGB 2J0GA 2FFDC 2XNXB 2WNPF 2Z4EC 1FIBA 1Z3SA 2JHMF 2JHLF 1N73C 4M7FA 3HUSB 1FZAB 4M7HA 1LTJB 2JHHC 3GHGC 2XNXC 4R9TA 2H43C 3BVHB 2J1GA 2J61B 2J64A 2JHIF 4EPUA 1LTJC 1Z3UA 2OYHB 4NYTA 4ZFGA 2HPCC 3H32C 2FIBA 1FZFB 2Q9IB 1LWUB 3BVHC 1FZDA 1FZCB 3E1IB 2J2PA 2HLOB 1LT9B 1M1JC 1FZBB 3FIBA 2Q9IC 1FZFC 1FZEB 4R9JA 1FZCC 2J0YA 1N86B 3HUSC 1RF0B 2HLOC 1FZAC 1LT9C 1RE3B 2OYIB 1FZBC 1JC9A 4JZCA 2J60A 2J5ZA 2JHKF 1RE3C 2D39A 1RE4B 1RF1B 2OYHC 1LWUC 2J3FA 3E1IC 2J3UA 2GY7A 2J61A 1FZGB 2H43B 2J0HA 1RE4C 1FICA 4JYOX 1RF1C 1FIDA 2HODB 1FZEC
chains in the Genus database with same CATH topology
1N86C 1RF0C 2FFDB 2Z4EB 2J3GA 2J3FD 2HPCB 3H32B 1N73B 2OYIC 1FZGC 2J3OA 2HODC 1M1JB 2J0GA 2FFDC 2XNXB 2WNPF 2Z4EC 1FIBA 1Z3SA 2JHMF 2JHLF 1N73C 4M7FA 3HUSB 1FZAB 4M7HA 1LTJB 2JHHC 3GHGC 2XNXC 4R9TA 2H43C 3BVHB 2J1GA 2J61B 2J64A 2JHIF 4EPUA 1LTJC 1Z3UA 2OYHB 4NYTA 4ZFGA 2HPCC 3H32C 2FIBA 1FZFB 2Q9IB 1LWUB 3BVHC 1FZDA 1FZCB 3E1IB 2J2PA 2HLOB 1LT9B 1M1JC 1FZBB 3FIBA 2Q9IC 1FZFC 1FZEB 4R9JA 1FZCC 2J0YA 1N86B 3HUSC 1RF0B 2HLOC 1FZAC 1LT9C 1RE3B 2OYIB 1FZBC 1JC9A 4JZCA 2J60A 2J5ZA 2JHKF 1RE3C 2D39A 1RE4B 1RF1B 2OYHC 1LWUC 2J3FA 3E1IC 2J3UA 2GY7A 2J61A 1FZGB 2H43B 2J0HA 1RE4C 1FICA 4JYOX 1RF1C 1FIDA 2HODB 1FZEC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N86 C;  1RF0 C;  2FFD B;  2Z4E B;  2J3G A;  2J3F D;  2HPC B;  3H32 B;  1N73 B;  2OYI C;  1FZG C;  2J3O A;  2HOD C;  1M1J B;  2J0G A;  2FFD C;  2XNX B;  2WNP F;  2Z4E C;  1FIB A;  1Z3S A;  2JHM F;  2JHL F;  1N73 C;  4M7F A;  3HUS B;  1FZA B;  4M7H A;  1LTJ B;  2JHH C;  3GHG C;  2XNX C;  4R9T A;  2H43 C;  3BVH B;  2J1G A;  2J61 B;  2J64 A;  2JHI F;  4EPU A;  1LTJ C;  1Z3U A;  2OYH B;  4NYT A;  4ZFG A;  2HPC C;  3H32 C;  2FIB A;  1FZF B;  2Q9I B;  1LWU B;  3BVH C;  1FZD A;  1FZC B;  3E1I B;  2J2P A;  2HLO B;  1LT9 B;  1M1J C;  1FZB B;  3FIB A;  2Q9I C;  1FZF C;  1FZE B;  4R9J A;  1FZC C;  2J0Y A;  1N86 B;  3HUS C;  1RF0 B;  2HLO C;  1FZA C;  1LT9 C;  1RE3 B;  2OYI B;  1FZB C;  1JC9 A;  4JZC A;  2J60 A;  2J5Z A;  2JHK F;  1RE3 C;  2D39 A;  1RE4 B;  1RF1 B;  2OYH C;  1LWU C;  2J3F A;  3E1I C;  2J3U A;  2GY7 A;  2J61 A;  1FZG B;  2H43 B;  2J0H A;  1RE4 C;  1FIC A;  4JYO X;  1RF1 C;  1FID A;  2HOD B;  1FZE C; 
#chains in the Genus database with same CATH topology
 1N86 C;  1RF0 C;  2FFD B;  2Z4E B;  2J3G A;  2J3F D;  2HPC B;  3H32 B;  1N73 B;  2OYI C;  1FZG C;  2J3O A;  2HOD C;  1M1J B;  3GHG B;  2J0G A;  2FFD C;  2XNX B;  2WNP F;  2Z4E C;  1FIB A;  1Z3S A;  2JHM F;  2JHL F;  1N73 C;  4M7F A;  3HUS B;  1FZA B;  4M7H A;  1LTJ B;  2JHH C;  3GHG C;  2XNX C;  4R9T A;  2H43 C;  3BVH B;  2J1G A;  2J61 B;  2J64 A;  2JHI F;  4EPU A;  1LTJ C;  1Z3U A;  2OYH B;  4NYT A;  4ZFG A;  2HPC C;  3H32 C;  2FIB A;  1FZF B;  2Q9I B;  1LWU B;  3BVH C;  1FZD A;  1FZC B;  3E1I B;  2J2P A;  2HLO B;  1LT9 B;  1M1J C;  1FZB B;  3FIB A;  2Q9I C;  1FZF C;  1FZE B;  4R9J A;  1FZC C;  2J0Y A;  1N86 B;  3HUS C;  1RF0 B;  2HLO C;  1FZA C;  1LT9 C;  1RE3 B;  2OYI B;  1FZB C;  1JC9 A;  4JZC A;  2J60 A;  2J5Z A;  2JHK F;  1RE3 C;  2D39 A;  1RE4 B;  1RF1 B;  2OYH C;  1LWU C;  2J3F A;  3E1I C;  2J3U A;  2GY7 A;  2J61 A;  1FZG B;  2H43 B;  2J0H A;  1RE4 C;  1FIC A;  4JYO X;  1RF1 C;  1FID A;  2HOD B;  1FZE C; 
#chains in the Genus database with same CATH homology
 1N86 C;  1RF0 C;  2FFD B;  2Z4E B;  2J3G A;  2J3F D;  2HPC B;  3H32 B;  1N73 B;  2OYI C;  1FZG C;  2J3O A;  2HOD C;  1M1J B;  2J0G A;  2FFD C;  2XNX B;  2WNP F;  2Z4E C;  1FIB A;  1Z3S A;  2JHM F;  2JHL F;  1N73 C;  4M7F A;  3HUS B;  1FZA B;  4M7H A;  1LTJ B;  2JHH C;  3GHG C;  2XNX C;  4R9T A;  2H43 C;  3BVH B;  2J1G A;  2J61 B;  2J64 A;  2JHI F;  4EPU A;  1LTJ C;  1Z3U A;  2OYH B;  4NYT A;  4ZFG A;  2HPC C;  3H32 C;  2FIB A;  1FZF B;  2Q9I B;  1LWU B;  3BVH C;  1FZD A;  1FZC B;  3E1I B;  2J2P A;  2HLO B;  1LT9 B;  1M1J C;  1FZB B;  3FIB A;  2Q9I C;  1FZF C;  1FZE B;  4R9J A;  1FZC C;  2J0Y A;  1N86 B;  3HUS C;  1RF0 B;  2HLO C;  1FZA C;  1LT9 C;  1RE3 B;  2OYI B;  1FZB C;  1JC9 A;  4JZC A;  2J60 A;  2J5Z A;  2JHK F;  1RE3 C;  2D39 A;  1RE4 B;  1RF1 B;  2OYH C;  1LWU C;  2J3F A;  3E1I C;  2J3U A;  2GY7 A;  2J61 A;  1FZG B;  2H43 B;  2J0H A;  1RE4 C;  1FIC A;  4JYO X;  1RF1 C;  1FID A;  2HOD B;  1FZE C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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