2J3UA

L-ficolin complexed to galactose
Total Genus 68

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
217
structure length
217
Chain Sequence
PCLTGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHTSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS8 (185-187)AH1 (80-85)S3 (117-123)O3 (80-108)TI'1 (112-115)S1 (92-97)TIV9 (213-216)TIV3 (109-112)3H1 (211-213)S2 (103-109)TI3 (204-207)TIV8 (208-211)AH2 (134-139)S10 (201-203)TIV4 (111-114)TIV5 (123-126)S6 (164-172)S9 (196-198)S4 (141-142)TI1 (143-146)S7 (176-182)S5 (148-149)AH3 (152-160)TI2 (172-175)TIV6 (189-192)TII1 (190-193)TIV7 (192-195)O5 (73-101)TIV2 (98-101)TIV1 (73-76)Updating...
connected with : NaN
publication title Structural Insights Into the Innate Immune Recognition Specificities of L- and H-Ficolins.
pubmed doi rcsb
molecule keywords FICOLIN-2
molecule tags Sugar binding protein
source organism Homo sapiens
total genus 68
structure length 217
sequence length 217
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2006-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 2j3uA01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 2j3uA02
3HUSB 1N73C 1Z3SA 1FZBB 1FZFB 2Q9IB 2JHHC 1FZEB 4M7FA 3H32C 4R9JA 1RF0B 2JHLF 4ZFGA 1JC9A 1FIDA 2J61B 2FIBA 1LWUB 2HODB 1LT9B 3BVHB 2JHMF 2Z4EC 2J0HA 4R9TA 1RE3B 2J61A 1RF1C 1LTJC 2OYIC 2HPCB 2J3UA 2H43B 1FICA 3HUSC 1FZBC 1FZFC 2Q9IC 1N86B 2FFDB 1FZEC 2J0GA 1RF0C 2J5ZA 2OYHB 1FZGB 1Z3UA 2HLOB 2XNXB 1LWUC 2HODC 1FIBA 1LT9C 3BVHC 2J60A 2J2PA 1RE3C 1M1JB 2HPCC 2H43C 2J3GA 1FZDA 1RE4B 2JHIF 2J0YA 1N86C 3E1IB 2FFDC 2J1GA 3GHGC 1FZCB 1FZAB 2OYHC 1N73B 1FZGC 2HLOC 2J3OA 2XNXC 2J3FD 3H32B 4EPUA 4NYTA 2JHKF 4M7HA 2GY7A 2J64A 4JYOX 2J3FA 1M1JC 2Z4EB 2WNPF 2D39A 1RE4C 1RF1B 2OYIB 1LTJB 3E1IC 4JZCA 1FZCC 1FZAC 3FIBA
chains in the Genus database with same CATH superfamily
3HUSB 1N73C 1Z3SA 1FZBB 1FZFB 2Q9IB 2JHHC 1FZEB 4M7FA 3H32C 4R9JA 1RF0B 2JHLF 4ZFGA 1JC9A 1FIDA 2J61B 2FIBA 1LWUB 2HODB 1LT9B 3BVHB 2JHMF 2Z4EC 2J0HA 4R9TA 1RE3B 2J61A 1RF1C 1LTJC 2OYIC 2HPCB 2J3UA 2H43B 1FICA 3HUSC 1FZBC 1FZFC 2Q9IC 1N86B 2FFDB 3GHGB 1FZEC 2J0GA 1RF0C 2J5ZA 2OYHB 1FZGB 1Z3UA 2HLOB 2XNXB 1LWUC 2HODC 1FIBA 1LT9C 3BVHC 2J60A 2J2PA 1RE3C 1M1JB 2HPCC 2H43C 2J3GA 1FZDA 1RE4B 2JHIF 2J0YA 1N86C 3E1IB 2FFDC 2J1GA 3GHGC 1FZCB 1FZAB 2OYHC 1N73B 1FZGC 2HLOC 2J3OA 2XNXC 2J3FD 3H32B 4EPUA 4NYTA 2JHKF 4M7HA 2GY7A 2J64A 4JYOX 2J3FA 1M1JC 2Z4EB 2WNPF 2D39A 1RE4C 1RF1B 2OYIB 1LTJB 3E1IC 4JZCA 1FZCC 1FZAC 3FIBA
chains in the Genus database with same CATH topology
3HUSB 1N73C 1Z3SA 1FZBB 1FZFB 2Q9IB 2JHHC 1FZEB 4M7FA 3H32C 4R9JA 1RF0B 2JHLF 4ZFGA 1JC9A 1FIDA 2J61B 2FIBA 1LWUB 2HODB 1LT9B 3BVHB 2JHMF 2Z4EC 2J0HA 4R9TA 1RE3B 2J61A 1RF1C 1LTJC 2OYIC 2HPCB 2J3UA 2H43B 1FICA 3HUSC 1FZBC 1FZFC 2Q9IC 1N86B 2FFDB 1FZEC 2J0GA 1RF0C 2J5ZA 2OYHB 1FZGB 1Z3UA 2HLOB 2XNXB 1LWUC 2HODC 1FIBA 1LT9C 3BVHC 2J60A 2J2PA 1RE3C 1M1JB 2HPCC 2H43C 2J3GA 1FZDA 1RE4B 2JHIF 2J0YA 1N86C 3E1IB 2FFDC 2J1GA 3GHGC 1FZCB 1FZAB 2OYHC 1N73B 1FZGC 2HLOC 2J3OA 2XNXC 2J3FD 3H32B 4EPUA 4NYTA 2JHKF 4M7HA 2GY7A 2J64A 4JYOX 2J3FA 1M1JC 2Z4EB 2WNPF 2D39A 1RE4C 1RF1B 2OYIB 1LTJB 3E1IC 4JZCA 1FZCC 1FZAC 3FIBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HUS B;  1N73 C;  1Z3S A;  1FZB B;  1FZF B;  2Q9I B;  2JHH C;  1FZE B;  4M7F A;  3H32 C;  4R9J A;  1RF0 B;  2JHL F;  4ZFG A;  1JC9 A;  1FID A;  2J61 B;  2FIB A;  1LWU B;  2HOD B;  1LT9 B;  3BVH B;  2JHM F;  2Z4E C;  2J0H A;  4R9T A;  1RE3 B;  2J61 A;  1RF1 C;  1LTJ C;  2OYI C;  2HPC B;  2J3U A;  2H43 B;  1FIC A;  3HUS C;  1FZB C;  1FZF C;  2Q9I C;  1N86 B;  2FFD B;  1FZE C;  2J0G A;  1RF0 C;  2J5Z A;  2OYH B;  1FZG B;  1Z3U A;  2HLO B;  2XNX B;  1LWU C;  2HOD C;  1FIB A;  1LT9 C;  3BVH C;  2J60 A;  2J2P A;  1RE3 C;  1M1J B;  2HPC C;  2H43 C;  2J3G A;  1FZD A;  1RE4 B;  2JHI F;  2J0Y A;  1N86 C;  3E1I B;  2FFD C;  2J1G A;  3GHG C;  1FZC B;  1FZA B;  2OYH C;  1N73 B;  1FZG C;  2HLO C;  2J3O A;  2XNX C;  2J3F D;  3H32 B;  4EPU A;  4NYT A;  2JHK F;  4M7H A;  2GY7 A;  2J64 A;  4JYO X;  2J3F A;  1M1J C;  2Z4E B;  2WNP F;  2D39 A;  1RE4 C;  1RF1 B;  2OYI B;  1LTJ B;  3E1I C;  4JZC A;  1FZC C;  1FZA C;  3FIB A; 
#chains in the Genus database with same CATH topology
 3HUS B;  1N73 C;  1Z3S A;  1FZB B;  1FZF B;  2Q9I B;  2JHH C;  1FZE B;  4M7F A;  3H32 C;  4R9J A;  1RF0 B;  2JHL F;  4ZFG A;  1JC9 A;  1FID A;  2J61 B;  2FIB A;  1LWU B;  2HOD B;  1LT9 B;  3BVH B;  2JHM F;  2Z4E C;  2J0H A;  4R9T A;  1RE3 B;  2J61 A;  1RF1 C;  1LTJ C;  2OYI C;  2HPC B;  2J3U A;  2H43 B;  1FIC A;  3HUS C;  1FZB C;  1FZF C;  2Q9I C;  1N86 B;  2FFD B;  3GHG B;  1FZE C;  2J0G A;  1RF0 C;  2J5Z A;  2OYH B;  1FZG B;  1Z3U A;  2HLO B;  2XNX B;  1LWU C;  2HOD C;  1FIB A;  1LT9 C;  3BVH C;  2J60 A;  2J2P A;  1RE3 C;  1M1J B;  2HPC C;  2H43 C;  2J3G A;  1FZD A;  1RE4 B;  2JHI F;  2J0Y A;  1N86 C;  3E1I B;  2FFD C;  2J1G A;  3GHG C;  1FZC B;  1FZA B;  2OYH C;  1N73 B;  1FZG C;  2HLO C;  2J3O A;  2XNX C;  2J3F D;  3H32 B;  4EPU A;  4NYT A;  2JHK F;  4M7H A;  2GY7 A;  2J64 A;  4JYO X;  2J3F A;  1M1J C;  2Z4E B;  2WNP F;  2D39 A;  1RE4 C;  1RF1 B;  2OYI B;  1LTJ B;  3E1I C;  4JZC A;  1FZC C;  1FZA C;  3FIB A; 
#chains in the Genus database with same CATH homology
 3HUS B;  1N73 C;  1Z3S A;  1FZB B;  1FZF B;  2Q9I B;  2JHH C;  1FZE B;  4M7F A;  3H32 C;  4R9J A;  1RF0 B;  2JHL F;  4ZFG A;  1JC9 A;  1FID A;  2J61 B;  2FIB A;  1LWU B;  2HOD B;  1LT9 B;  3BVH B;  2JHM F;  2Z4E C;  2J0H A;  4R9T A;  1RE3 B;  2J61 A;  1RF1 C;  1LTJ C;  2OYI C;  2HPC B;  2J3U A;  2H43 B;  1FIC A;  3HUS C;  1FZB C;  1FZF C;  2Q9I C;  1N86 B;  2FFD B;  1FZE C;  2J0G A;  1RF0 C;  2J5Z A;  2OYH B;  1FZG B;  1Z3U A;  2HLO B;  2XNX B;  1LWU C;  2HOD C;  1FIB A;  1LT9 C;  3BVH C;  2J60 A;  2J2P A;  1RE3 C;  1M1J B;  2HPC C;  2H43 C;  2J3G A;  1FZD A;  1RE4 B;  2JHI F;  2J0Y A;  1N86 C;  3E1I B;  2FFD C;  2J1G A;  3GHG C;  1FZC B;  1FZA B;  2OYH C;  1N73 B;  1FZG C;  2HLO C;  2J3O A;  2XNX C;  2J3F D;  3H32 B;  4EPU A;  4NYT A;  2JHK F;  4M7H A;  2GY7 A;  2J64 A;  4JYO X;  2J3F A;  1M1J C;  2Z4E B;  2WNP F;  2D39 A;  1RE4 C;  1RF1 B;  2OYI B;  1LTJ B;  3E1I C;  4JZC A;  1FZC C;  1FZA C;  3FIB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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