2J61B

L-ficolin complexed to n-acetylglucosamine (forme c)
Total Genus 71

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
216
structure length
216
Chain Sequence
CLTGPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHTSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
AH1 (80-86)S3 (117-123)3H1 (112-114)O2 (73-101)TII1 (213-216)S1 (92-97)TIV1 (109-112)TIV6 (208-211)TI2 (98-101)O3 (80-108)S2 (103-109)TI6 (204-207)AH2 (134-139)O1 (130-132)EMPTYTIV2 (123-126)TI3 (143-146)S4 (141-142)TI4 (172-175)S7 (176-178)AH3 (152-160)S6 (164-172)TIV3 (144-147)S5 (148-149)TIV4 (189-192)S9 (201-203)TI5 (190-193)TIV5 (192-195)S8 (181-182)3H2 (211-213)TI1 (73-76)Updating...
connected with : NaN
molecule tags Lectin
source organism Homo sapiens
publication title Structural Insights Into the Innate Immune Recognition Specificities of L- and H-Ficolins.
pubmed doi rcsb
molecule keywords FICOLIN-2
total genus 71
structure length 216
sequence length 216
ec nomenclature
pdb deposition date 2006-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 2j61B01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 2j61B02
1M1JC 1RF1B 2HPCC 1Z3SA 2FFDB 4JYOX 1LWUC 1FZFB 2Q9IB 2J0HA 1M1JB 2HPCB 1Z3UA 4EPUA 1LWUB 2HODC 2JHLF 2D39A 1FICA 2HLOC 4R9JA 2JHKF 1FZBC 1FZEC 2Z4EC 1JC9A 2J2PA 2HODB 2J3GA 1FIDA 3GHGC 2J5ZA 3H32C 2HLOB 1FZBB 1FZEB 2Z4EB 1LTJC 2JHIF 1N86C 3H32B 3HUSC 2JHMF 2J61A 2OYHC 2WNPF 2J60A 1LTJB 1LT9C 4NYTA 1N86B 2J1GA 2J0YA 3BVHC 3HUSB 2OYHB 1LT9B 1FIBA 2H43C 1RE3C 2J3FA 1FZCC 3BVHB 4ZFGA 4M7HA 2FIBA 1FZAC 2J3FD 2H43B 1RE3B 1N73C 1FZCB 2J0GA 2OYIC 2XNXC 1RE4C 3E1IC 4M7FA 2J64A 1FZAB 4JZCA 1N73B 3FIBA 2OYIB 2J61B 2XNXB 1FZGC 1RE4B 3E1IB 2JHHC 2J3OA 1RF0C 1RF1C 2FFDC 2GY7A 2J3UA 1FZGB 1FZFC 4R9TA 2Q9IC 1FZDA 1RF0B
chains in the Genus database with same CATH superfamily
1M1JC 1RF1B 2HPCC 1Z3SA 2FFDB 4JYOX 1LWUC 1FZFB 2Q9IB 2J0HA 1M1JB 2HPCB 1Z3UA 4EPUA 1LWUB 2HODC 2JHLF 2D39A 1FICA 2HLOC 4R9JA 2JHKF 1FZBC 1FZEC 2Z4EC 1JC9A 2J2PA 2HODB 2J3GA 1FIDA 3GHGC 2J5ZA 3H32C 2HLOB 1FZBB 1FZEB 2Z4EB 1LTJC 2JHIF 1N86C 3GHGB 3H32B 3HUSC 2JHMF 2J61A 2OYHC 2WNPF 2J60A 1LTJB 1LT9C 4NYTA 1N86B 2J1GA 2J0YA 3BVHC 3HUSB 2OYHB 1LT9B 1FIBA 2H43C 1RE3C 2J3FA 1FZCC 3BVHB 4ZFGA 4M7HA 2FIBA 1FZAC 2J3FD 2H43B 1RE3B 1N73C 1FZCB 2J0GA 2OYIC 2XNXC 1RE4C 3E1IC 4M7FA 2J64A 1FZAB 4JZCA 1N73B 3FIBA 2OYIB 2J61B 2XNXB 1FZGC 1RE4B 3E1IB 2JHHC 2J3OA 1RF0C 1RF1C 2FFDC 2GY7A 2J3UA 1FZGB 1FZFC 4R9TA 2Q9IC 1FZDA 1RF0B
chains in the Genus database with same CATH topology
1M1JC 1RF1B 2HPCC 1Z3SA 2FFDB 4JYOX 1LWUC 1FZFB 2Q9IB 2J0HA 1M1JB 2HPCB 1Z3UA 4EPUA 1LWUB 2HODC 2JHLF 2D39A 1FICA 2HLOC 4R9JA 2JHKF 1FZBC 1FZEC 2Z4EC 1JC9A 2J2PA 2HODB 2J3GA 1FIDA 3GHGC 2J5ZA 3H32C 2HLOB 1FZBB 1FZEB 2Z4EB 1LTJC 2JHIF 1N86C 3H32B 3HUSC 2JHMF 2J61A 2OYHC 2WNPF 2J60A 1LTJB 1LT9C 4NYTA 1N86B 2J1GA 2J0YA 3BVHC 3HUSB 2OYHB 1LT9B 1FIBA 2H43C 1RE3C 2J3FA 1FZCC 3BVHB 4ZFGA 4M7HA 2FIBA 1FZAC 2J3FD 2H43B 1RE3B 1N73C 1FZCB 2J0GA 2OYIC 2XNXC 1RE4C 3E1IC 4M7FA 2J64A 1FZAB 4JZCA 1N73B 3FIBA 2OYIB 2J61B 2XNXB 1FZGC 1RE4B 3E1IB 2JHHC 2J3OA 1RF0C 1RF1C 2FFDC 2GY7A 2J3UA 1FZGB 1FZFC 4R9TA 2Q9IC 1FZDA 1RF0B
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1M1J C;  1RF1 B;  2HPC C;  1Z3S A;  2FFD B;  4JYO X;  1LWU C;  1FZF B;  2Q9I B;  2J0H A;  1M1J B;  2HPC B;  1Z3U A;  4EPU A;  1LWU B;  2HOD C;  2JHL F;  2D39 A;  1FIC A;  2HLO C;  4R9J A;  2JHK F;  1FZB C;  1FZE C;  2Z4E C;  1JC9 A;  2J2P A;  2HOD B;  2J3G A;  1FID A;  3GHG C;  2J5Z A;  3H32 C;  2HLO B;  1FZB B;  1FZE B;  2Z4E B;  1LTJ C;  2JHI F;  1N86 C;  3H32 B;  3HUS C;  2JHM F;  2J61 A;  2OYH C;  2WNP F;  2J60 A;  1LTJ B;  1LT9 C;  4NYT A;  1N86 B;  2J1G A;  2J0Y A;  3BVH C;  3HUS B;  2OYH B;  1LT9 B;  1FIB A;  2H43 C;  1RE3 C;  2J3F A;  1FZC C;  3BVH B;  4ZFG A;  4M7H A;  2FIB A;  1FZA C;  2J3F D;  2H43 B;  1RE3 B;  1N73 C;  1FZC B;  2J0G A;  2OYI C;  2XNX C;  1RE4 C;  3E1I C;  4M7F A;  2J64 A;  1FZA B;  4JZC A;  1N73 B;  3FIB A;  2OYI B;  2J61 B;  2XNX B;  1FZG C;  1RE4 B;  3E1I B;  2JHH C;  2J3O A;  1RF0 C;  1RF1 C;  2FFD C;  2GY7 A;  2J3U A;  1FZG B;  1FZF C;  4R9T A;  2Q9I C;  1FZD A;  1RF0 B; 
#chains in the Genus database with same CATH topology
 1M1J C;  1RF1 B;  2HPC C;  1Z3S A;  2FFD B;  4JYO X;  1LWU C;  1FZF B;  2Q9I B;  2J0H A;  1M1J B;  2HPC B;  1Z3U A;  4EPU A;  1LWU B;  2HOD C;  2JHL F;  2D39 A;  1FIC A;  2HLO C;  4R9J A;  2JHK F;  1FZB C;  1FZE C;  2Z4E C;  1JC9 A;  2J2P A;  2HOD B;  2J3G A;  1FID A;  3GHG C;  2J5Z A;  3H32 C;  2HLO B;  1FZB B;  1FZE B;  2Z4E B;  1LTJ C;  2JHI F;  1N86 C;  3GHG B;  3H32 B;  3HUS C;  2JHM F;  2J61 A;  2OYH C;  2WNP F;  2J60 A;  1LTJ B;  1LT9 C;  4NYT A;  1N86 B;  2J1G A;  2J0Y A;  3BVH C;  3HUS B;  2OYH B;  1LT9 B;  1FIB A;  2H43 C;  1RE3 C;  2J3F A;  1FZC C;  3BVH B;  4ZFG A;  4M7H A;  2FIB A;  1FZA C;  2J3F D;  2H43 B;  1RE3 B;  1N73 C;  1FZC B;  2J0G A;  2OYI C;  2XNX C;  1RE4 C;  3E1I C;  4M7F A;  2J64 A;  1FZA B;  4JZC A;  1N73 B;  3FIB A;  2OYI B;  2J61 B;  2XNX B;  1FZG C;  1RE4 B;  3E1I B;  2JHH C;  2J3O A;  1RF0 C;  1RF1 C;  2FFD C;  2GY7 A;  2J3U A;  1FZG B;  1FZF C;  4R9T A;  2Q9I C;  1FZD A;  1RF0 B; 
#chains in the Genus database with same CATH homology
 1M1J C;  1RF1 B;  2HPC C;  1Z3S A;  2FFD B;  4JYO X;  1LWU C;  1FZF B;  2Q9I B;  2J0H A;  1M1J B;  2HPC B;  1Z3U A;  4EPU A;  1LWU B;  2HOD C;  2JHL F;  2D39 A;  1FIC A;  2HLO C;  4R9J A;  2JHK F;  1FZB C;  1FZE C;  2Z4E C;  1JC9 A;  2J2P A;  2HOD B;  2J3G A;  1FID A;  3GHG C;  2J5Z A;  3H32 C;  2HLO B;  1FZB B;  1FZE B;  2Z4E B;  1LTJ C;  2JHI F;  1N86 C;  3H32 B;  3HUS C;  2JHM F;  2J61 A;  2OYH C;  2WNP F;  2J60 A;  1LTJ B;  1LT9 C;  4NYT A;  1N86 B;  2J1G A;  2J0Y A;  3BVH C;  3HUS B;  2OYH B;  1LT9 B;  1FIB A;  2H43 C;  1RE3 C;  2J3F A;  1FZC C;  3BVH B;  4ZFG A;  4M7H A;  2FIB A;  1FZA C;  2J3F D;  2H43 B;  1RE3 B;  1N73 C;  1FZC B;  2J0G A;  2OYI C;  2XNX C;  1RE4 C;  3E1I C;  4M7F A;  2J64 A;  1FZA B;  4JZC A;  1N73 B;  3FIB A;  2OYI B;  2J61 B;  2XNX B;  1FZG C;  1RE4 B;  3E1I B;  2JHH C;  2J3O A;  1RF0 C;  1RF1 C;  2FFD C;  2GY7 A;  2J3U A;  1FZG B;  1FZF C;  4R9T A;  2Q9I C;  1FZD A;  1RF0 B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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