2JHHC

Structure of globular heads of m-ficolin at acidic ph
Total Genus 59

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
217
structure length
208
Chain Sequence
SCATGPRNCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSSELRTDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGSAGNSLTGHNNNFFSTKDQDNDVSSSNCAEKFQGAWWYADCHASNLNGLYLMGPHESYANGINWYKVSEMKVRPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI3 (107-110)TI5 (181-184)TI1 (81-84)TI2 (82-85)TIV2 (120-123)O2 (82-110)S2 (112-118)AH1 (89-95)S9 (205-207)O3 (89-117)S1 (101-106)TIV3 (132-135)TI'1 (121-124)TIV1 (118-121)AH2 (143-148)TI4 (152-155)S3 (126-132)S5 (157-158)AH3 (161-168)S6 (173-180)S8 (194-196)3H1 (199-201)S7 (186-191)TIV4 (201-204)S4 (150-151)Updating...
connected with : NaN
publication title Structural basis for innate immune sensing by M-ficolin and its control by a pH-dependent conformational switch.
pubmed doi rcsb
molecule keywords FICOLIN-1
molecule tags Sugar binding protein
source organism Homo sapiens
total genus 59
structure length 208
sequence length 217
chains with identical sequence F
ec nomenclature
pdb deposition date 2007-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 2jhhC01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 2jhhC02
4NYTA 3GHGC 3BVHB 1FIDA 1FZDA 4EPUA 2H43B 1LWUB 1M1JB 1LTJC 2J3OA 2HODC 1N73C 2J60A 3H32B 1LT9C 3E1IB 4JZCA 2FFDB 3FIBA 2JHIF 2J3GA 1FZAB 1RF0B 1FZGC 1FZCC 1FZBC 2OYHC 2FIBA 2Z4EC 1RE3B 1N86B 1Z3UA 1Z3SA 2J61B 2Q9IB 2J2PA 2JHLF 2HPCB 4ZFGA 2H43C 1LWUC 2J5ZA 2OYIB 1M1JC 1RE4C 2J0YA 2FFDC 2XNXC 1LTJB 2HLOB 1LT9B 1FZEC 1RF0C 4M7HA 1RF1B 2J1GA 2J0GA 4R9TA 2J61A 1N86C 3HUSB 1FZFB 3BVHC 2OYHB 2Z4EB 2WNPF 2JHHC 2Q9IC 4R9JA 2J0HA 1JC9A 3H32C 3E1IC 2HPCC 2OYIC 2D39A 1N73B 2HODB 1FZAC 2J64A 2JHMF 2J3FD 2HLOC 1RE4B 1FIBA 2GY7A 2J3FA 4JYOX 1FICA 1RE3C 1RF1C 2JHKF 1FZGB 1FZCB 1FZBB 2XNXB 1FZEB 4M7FA 2J3UA 3HUSC 1FZFC
chains in the Genus database with same CATH superfamily
4NYTA 3GHGC 3BVHB 1FIDA 1FZDA 4EPUA 2H43B 1LWUB 1M1JB 1LTJC 2J3OA 2HODC 1N73C 2J60A 3H32B 1LT9C 3E1IB 4JZCA 2FFDB 3FIBA 2JHIF 2J3GA 1FZAB 1RF0B 1FZGC 1FZCC 1FZBC 2OYHC 2FIBA 2Z4EC 1RE3B 1N86B 1Z3UA 1Z3SA 2J61B 2Q9IB 2J2PA 2JHLF 2HPCB 4ZFGA 2H43C 1LWUC 3GHGB 2J5ZA 2OYIB 1M1JC 1RE4C 2J0YA 2FFDC 2XNXC 1LTJB 2HLOB 1LT9B 1FZEC 1RF0C 4M7HA 1RF1B 2J1GA 2J0GA 4R9TA 2J61A 1N86C 3HUSB 1FZFB 3BVHC 2OYHB 2Z4EB 2WNPF 2JHHC 2Q9IC 4R9JA 2J0HA 1JC9A 3H32C 3E1IC 2HPCC 2OYIC 2D39A 1N73B 2HODB 1FZAC 2J64A 2JHMF 2J3FD 2HLOC 1RE4B 1FIBA 2GY7A 2J3FA 4JYOX 1FICA 1RE3C 1RF1C 2JHKF 1FZGB 1FZCB 1FZBB 2XNXB 1FZEB 4M7FA 2J3UA 3HUSC 1FZFC
chains in the Genus database with same CATH topology
4NYTA 3GHGC 3BVHB 1FIDA 1FZDA 4EPUA 2H43B 1LWUB 1M1JB 1LTJC 2J3OA 2HODC 1N73C 2J60A 3H32B 1LT9C 3E1IB 4JZCA 2FFDB 3FIBA 2JHIF 2J3GA 1FZAB 1RF0B 1FZGC 1FZCC 1FZBC 2OYHC 2FIBA 2Z4EC 1RE3B 1N86B 1Z3UA 1Z3SA 2J61B 2Q9IB 2J2PA 2JHLF 2HPCB 4ZFGA 2H43C 1LWUC 2J5ZA 2OYIB 1M1JC 1RE4C 2J0YA 2FFDC 2XNXC 1LTJB 2HLOB 1LT9B 1FZEC 1RF0C 4M7HA 1RF1B 2J1GA 2J0GA 4R9TA 2J61A 1N86C 3HUSB 1FZFB 3BVHC 2OYHB 2Z4EB 2WNPF 2JHHC 2Q9IC 4R9JA 2J0HA 1JC9A 3H32C 3E1IC 2HPCC 2OYIC 2D39A 1N73B 2HODB 1FZAC 2J64A 2JHMF 2J3FD 2HLOC 1RE4B 1FIBA 2GY7A 2J3FA 4JYOX 1FICA 1RE3C 1RF1C 2JHKF 1FZGB 1FZCB 1FZBB 2XNXB 1FZEB 4M7FA 2J3UA 3HUSC 1FZFC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NYT A;  3GHG C;  3BVH B;  1FID A;  1FZD A;  4EPU A;  2H43 B;  1LWU B;  1M1J B;  1LTJ C;  2J3O A;  2HOD C;  1N73 C;  2J60 A;  3H32 B;  1LT9 C;  3E1I B;  4JZC A;  2FFD B;  3FIB A;  2JHI F;  2J3G A;  1FZA B;  1RF0 B;  1FZG C;  1FZC C;  1FZB C;  2OYH C;  2FIB A;  2Z4E C;  1RE3 B;  1N86 B;  1Z3U A;  1Z3S A;  2J61 B;  2Q9I B;  2J2P A;  2JHL F;  2HPC B;  4ZFG A;  2H43 C;  1LWU C;  2J5Z A;  2OYI B;  1M1J C;  1RE4 C;  2J0Y A;  2FFD C;  2XNX C;  1LTJ B;  2HLO B;  1LT9 B;  1FZE C;  1RF0 C;  4M7H A;  1RF1 B;  2J1G A;  2J0G A;  4R9T A;  2J61 A;  1N86 C;  3HUS B;  1FZF B;  3BVH C;  2OYH B;  2Z4E B;  2WNP F;  2JHH C;  2Q9I C;  4R9J A;  2J0H A;  1JC9 A;  3H32 C;  3E1I C;  2HPC C;  2OYI C;  2D39 A;  1N73 B;  2HOD B;  1FZA C;  2J64 A;  2JHM F;  2J3F D;  2HLO C;  1RE4 B;  1FIB A;  2GY7 A;  2J3F A;  4JYO X;  1FIC A;  1RE3 C;  1RF1 C;  2JHK F;  1FZG B;  1FZC B;  1FZB B;  2XNX B;  1FZE B;  4M7F A;  2J3U A;  3HUS C;  1FZF C; 
#chains in the Genus database with same CATH topology
 4NYT A;  3GHG C;  3BVH B;  1FID A;  1FZD A;  4EPU A;  2H43 B;  1LWU B;  1M1J B;  1LTJ C;  2J3O A;  2HOD C;  1N73 C;  2J60 A;  3H32 B;  1LT9 C;  3E1I B;  4JZC A;  2FFD B;  3FIB A;  2JHI F;  2J3G A;  1FZA B;  1RF0 B;  1FZG C;  1FZC C;  1FZB C;  2OYH C;  2FIB A;  2Z4E C;  1RE3 B;  1N86 B;  1Z3U A;  1Z3S A;  2J61 B;  2Q9I B;  2J2P A;  2JHL F;  2HPC B;  4ZFG A;  2H43 C;  1LWU C;  3GHG B;  2J5Z A;  2OYI B;  1M1J C;  1RE4 C;  2J0Y A;  2FFD C;  2XNX C;  1LTJ B;  2HLO B;  1LT9 B;  1FZE C;  1RF0 C;  4M7H A;  1RF1 B;  2J1G A;  2J0G A;  4R9T A;  2J61 A;  1N86 C;  3HUS B;  1FZF B;  3BVH C;  2OYH B;  2Z4E B;  2WNP F;  2JHH C;  2Q9I C;  4R9J A;  2J0H A;  1JC9 A;  3H32 C;  3E1I C;  2HPC C;  2OYI C;  2D39 A;  1N73 B;  2HOD B;  1FZA C;  2J64 A;  2JHM F;  2J3F D;  2HLO C;  1RE4 B;  1FIB A;  2GY7 A;  2J3F A;  4JYO X;  1FIC A;  1RE3 C;  1RF1 C;  2JHK F;  1FZG B;  1FZC B;  1FZB B;  2XNX B;  1FZE B;  4M7F A;  2J3U A;  3HUS C;  1FZF C; 
#chains in the Genus database with same CATH homology
 4NYT A;  3GHG C;  3BVH B;  1FID A;  1FZD A;  4EPU A;  2H43 B;  1LWU B;  1M1J B;  1LTJ C;  2J3O A;  2HOD C;  1N73 C;  2J60 A;  3H32 B;  1LT9 C;  3E1I B;  4JZC A;  2FFD B;  3FIB A;  2JHI F;  2J3G A;  1FZA B;  1RF0 B;  1FZG C;  1FZC C;  1FZB C;  2OYH C;  2FIB A;  2Z4E C;  1RE3 B;  1N86 B;  1Z3U A;  1Z3S A;  2J61 B;  2Q9I B;  2J2P A;  2JHL F;  2HPC B;  4ZFG A;  2H43 C;  1LWU C;  2J5Z A;  2OYI B;  1M1J C;  1RE4 C;  2J0Y A;  2FFD C;  2XNX C;  1LTJ B;  2HLO B;  1LT9 B;  1FZE C;  1RF0 C;  4M7H A;  1RF1 B;  2J1G A;  2J0G A;  4R9T A;  2J61 A;  1N86 C;  3HUS B;  1FZF B;  3BVH C;  2OYH B;  2Z4E B;  2WNP F;  2JHH C;  2Q9I C;  4R9J A;  2J0H A;  1JC9 A;  3H32 C;  3E1I C;  2HPC C;  2OYI C;  2D39 A;  1N73 B;  2HOD B;  1FZA C;  2J64 A;  2JHM F;  2J3F D;  2HLO C;  1RE4 B;  1FIB A;  2GY7 A;  2J3F A;  4JYO X;  1FIC A;  1RE3 C;  1RF1 C;  2JHK F;  1FZG B;  1FZC B;  1FZB B;  2XNX B;  1FZE B;  4M7F A;  2J3U A;  3HUS C;  1FZF C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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