2JHHC

Structure of globular heads of m-ficolin at acidic ph
Total Genus 59

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
217
structure length
208
Chain Sequence
SCATGPRNCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSSELRTDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGSAGNSLTGHNNNFFSTKDQDNDVSSSNCAEKFQGAWWYADCHASNLNGLYLMGPHESYANGINWYKVSEMKVRPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
Updating...
connected with : NaN
publication title Structural basis for innate immune sensing by M-ficolin and its control by a pH-dependent conformational switch.
pubmed doi rcsb
molecule keywords FICOLIN-1
molecule tags Sugar binding protein
source organism Homo sapiens
total genus 59
structure length 208
sequence length 217
chains with identical sequence F
ec nomenclature
pdb deposition date 2007-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 2jhhC01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 2jhhC02
4ZFGA 2HPCC 1Z3SA 1FIBA 2J64A 4R9JA 1N73C 2Q9IC 1LTJB 1FZGB 1JC9A 1LWUC 2JHMF 1FZDA 1RE3C 2Z4EB 2J3GA 4M7HA 3FIBA 3BVHC 2HODB 2FFDC 1RE4C 1Z3UA 3GHGC 3HUSB 1FZAB 2OYIC 2J3OA 2HLOB 2OYHC 2JHKF 2D39A 1RF0B 2J3UA 2H43C 1LT9C 2GY7A 1FZFC 1FZEB 2XNXC 1LTJC 3H32C 1FZGC 2HPCB 4M7FA 2J0GA 4R9TA 1N73B 4NYTA 4EPUA 3E1IC 2JHHC 2Q9IB 1FZCB 1FZBC 1FICA 1LWUB 1N86C 1RE3B 2J61B 1M1JB 3HUSC 3BVHB 1FZAC 1FIDA 2J3FA 2JHLF 1RF1B 2FIBA 2OYIB 2J0HA 4JYOX 2OYHB 2J3FD 2Z4EC 2HODC 2H43B 1LT9B 2JHIF 1FZFB 4JZCA 2XNXB 3H32B 2J5ZA 1FZCC 2FFDB 2J60A 2HLOC 3E1IB 1RE4B 2J0YA 1M1JC 1RF0C 1FZBB 1N86B 2WNPF 2J2PA 2J1GA 2J61A 1RF1C 1FZEC
chains in the Genus database with same CATH superfamily
4ZFGA 2HPCC 1Z3SA 1FIBA 2J64A 4R9JA 1N73C 2Q9IC 1LTJB 1FZGB 1JC9A 1LWUC 2JHMF 1FZDA 1RE3C 2Z4EB 2J3GA 4M7HA 3FIBA 3BVHC 2HODB 2FFDC 1RE4C 1Z3UA 3GHGC 3HUSB 1FZAB 2OYIC 2J3OA 2HLOB 2OYHC 2JHKF 2D39A 1RF0B 2J3UA 2H43C 1LT9C 2GY7A 1FZFC 1FZEB 2XNXC 1LTJC 3H32C 1FZGC 2HPCB 4M7FA 2J0GA 4R9TA 1N73B 4NYTA 4EPUA 3E1IC 2JHHC 2Q9IB 1FZCB 1FZBC 1FICA 1LWUB 1N86C 1RE3B 2J61B 1M1JB 3HUSC 3BVHB 1FZAC 1FIDA 2J3FA 2JHLF 1RF1B 2FIBA 2OYIB 2J0HA 4JYOX 2OYHB 2J3FD 2Z4EC 2HODC 2H43B 1LT9B 2JHIF 1FZFB 4JZCA 2XNXB 3H32B 2J5ZA 1FZCC 2FFDB 2J60A 2HLOC 3E1IB 1RE4B 2J0YA 1M1JC 3GHGB 1RF0C 1FZBB 1N86B 2WNPF 2J2PA 2J1GA 2J61A 1RF1C 1FZEC
chains in the Genus database with same CATH topology
4ZFGA 2HPCC 1Z3SA 1FIBA 2J64A 4R9JA 1N73C 2Q9IC 1LTJB 1FZGB 1JC9A 1LWUC 2JHMF 1FZDA 1RE3C 2Z4EB 2J3GA 4M7HA 3FIBA 3BVHC 2HODB 2FFDC 1RE4C 1Z3UA 3GHGC 3HUSB 1FZAB 2OYIC 2J3OA 2HLOB 2OYHC 2JHKF 2D39A 1RF0B 2J3UA 2H43C 1LT9C 2GY7A 1FZFC 1FZEB 2XNXC 1LTJC 3H32C 1FZGC 2HPCB 4M7FA 2J0GA 4R9TA 1N73B 4NYTA 4EPUA 3E1IC 2JHHC 2Q9IB 1FZCB 1FZBC 1FICA 1LWUB 1N86C 1RE3B 2J61B 1M1JB 3HUSC 3BVHB 1FZAC 1FIDA 2J3FA 2JHLF 1RF1B 2FIBA 2OYIB 2J0HA 4JYOX 2OYHB 2J3FD 2Z4EC 2HODC 2H43B 1LT9B 2JHIF 1FZFB 4JZCA 2XNXB 3H32B 2J5ZA 1FZCC 2FFDB 2J60A 2HLOC 3E1IB 1RE4B 2J0YA 1M1JC 1RF0C 1FZBB 1N86B 2WNPF 2J2PA 2J1GA 2J61A 1RF1C 1FZEC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZFG A;  2HPC C;  1Z3S A;  1FIB A;  2J64 A;  4R9J A;  1N73 C;  2Q9I C;  1LTJ B;  1FZG B;  1JC9 A;  1LWU C;  2JHM F;  1FZD A;  1RE3 C;  2Z4E B;  2J3G A;  4M7H A;  3FIB A;  3BVH C;  2HOD B;  2FFD C;  1RE4 C;  1Z3U A;  3GHG C;  3HUS B;  1FZA B;  2OYI C;  2J3O A;  2HLO B;  2OYH C;  2JHK F;  2D39 A;  1RF0 B;  2J3U A;  2H43 C;  1LT9 C;  2GY7 A;  1FZF C;  1FZE B;  2XNX C;  1LTJ C;  3H32 C;  1FZG C;  2HPC B;  4M7F A;  2J0G A;  4R9T A;  1N73 B;  4NYT A;  4EPU A;  3E1I C;  2JHH C;  2Q9I B;  1FZC B;  1FZB C;  1FIC A;  1LWU B;  1N86 C;  1RE3 B;  2J61 B;  1M1J B;  3HUS C;  3BVH B;  1FZA C;  1FID A;  2J3F A;  2JHL F;  1RF1 B;  2FIB A;  2OYI B;  2J0H A;  4JYO X;  2OYH B;  2J3F D;  2Z4E C;  2HOD C;  2H43 B;  1LT9 B;  2JHI F;  1FZF B;  4JZC A;  2XNX B;  3H32 B;  2J5Z A;  1FZC C;  2FFD B;  2J60 A;  2HLO C;  3E1I B;  1RE4 B;  2J0Y A;  1M1J C;  1RF0 C;  1FZB B;  1N86 B;  2WNP F;  2J2P A;  2J1G A;  2J61 A;  1RF1 C;  1FZE C; 
#chains in the Genus database with same CATH topology
 4ZFG A;  2HPC C;  1Z3S A;  1FIB A;  2J64 A;  4R9J A;  1N73 C;  2Q9I C;  1LTJ B;  1FZG B;  1JC9 A;  1LWU C;  2JHM F;  1FZD A;  1RE3 C;  2Z4E B;  2J3G A;  4M7H A;  3FIB A;  3BVH C;  2HOD B;  2FFD C;  1RE4 C;  1Z3U A;  3GHG C;  3HUS B;  1FZA B;  2OYI C;  2J3O A;  2HLO B;  2OYH C;  2JHK F;  2D39 A;  1RF0 B;  2J3U A;  2H43 C;  1LT9 C;  2GY7 A;  1FZF C;  1FZE B;  2XNX C;  1LTJ C;  3H32 C;  1FZG C;  2HPC B;  4M7F A;  2J0G A;  4R9T A;  1N73 B;  4NYT A;  4EPU A;  3E1I C;  2JHH C;  2Q9I B;  1FZC B;  1FZB C;  1FIC A;  1LWU B;  1N86 C;  1RE3 B;  2J61 B;  1M1J B;  3HUS C;  3BVH B;  1FZA C;  1FID A;  2J3F A;  2JHL F;  1RF1 B;  2FIB A;  2OYI B;  2J0H A;  4JYO X;  2OYH B;  2J3F D;  2Z4E C;  2HOD C;  2H43 B;  1LT9 B;  2JHI F;  1FZF B;  4JZC A;  2XNX B;  3H32 B;  2J5Z A;  1FZC C;  2FFD B;  2J60 A;  2HLO C;  3E1I B;  1RE4 B;  2J0Y A;  1M1J C;  3GHG B;  1RF0 C;  1FZB B;  1N86 B;  2WNP F;  2J2P A;  2J1G A;  2J61 A;  1RF1 C;  1FZE C; 
#chains in the Genus database with same CATH homology
 4ZFG A;  2HPC C;  1Z3S A;  1FIB A;  2J64 A;  4R9J A;  1N73 C;  2Q9I C;  1LTJ B;  1FZG B;  1JC9 A;  1LWU C;  2JHM F;  1FZD A;  1RE3 C;  2Z4E B;  2J3G A;  4M7H A;  3FIB A;  3BVH C;  2HOD B;  2FFD C;  1RE4 C;  1Z3U A;  3GHG C;  3HUS B;  1FZA B;  2OYI C;  2J3O A;  2HLO B;  2OYH C;  2JHK F;  2D39 A;  1RF0 B;  2J3U A;  2H43 C;  1LT9 C;  2GY7 A;  1FZF C;  1FZE B;  2XNX C;  1LTJ C;  3H32 C;  1FZG C;  2HPC B;  4M7F A;  2J0G A;  4R9T A;  1N73 B;  4NYT A;  4EPU A;  3E1I C;  2JHH C;  2Q9I B;  1FZC B;  1FZB C;  1FIC A;  1LWU B;  1N86 C;  1RE3 B;  2J61 B;  1M1J B;  3HUS C;  3BVH B;  1FZA C;  1FID A;  2J3F A;  2JHL F;  1RF1 B;  2FIB A;  2OYI B;  2J0H A;  4JYO X;  2OYH B;  2J3F D;  2Z4E C;  2HOD C;  2H43 B;  1LT9 B;  2JHI F;  1FZF B;  4JZC A;  2XNX B;  3H32 B;  2J5Z A;  1FZC C;  2FFD B;  2J60 A;  2HLO C;  3E1I B;  1RE4 B;  2J0Y A;  1M1J C;  1RF0 C;  1FZB B;  1N86 B;  2WNP F;  2J2P A;  2J1G A;  2J61 A;  1RF1 C;  1FZE C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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