2XNXB

Bc1 fragment of streptococcal m1 protein in complex with human fibrinogen
Total Genus 72

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
312
structure length
312
Chain Sequence
HQLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRTPCTVSCNIPVVSGKECEEIIRKGGETSEMYLIQPDSSVKPYRVYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYCGLPGEYWLGNDKISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGASQLMGENRTMTIHNGMFFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGGQYTWDMAKHGTDDGVVWMNWKGSWYSMRKMSMKIRPFFPQ
5010015020025030030025020015010050
010203040506070Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
AH3 (266-271)EMPTYTI3 (230-233)S3 (249-255)TI1 (154-157)TIV4 (157-160)S8 (308-315)TIV3 (156-159)AH1 (162-193)TIV5 (158-161)S1 (223-227)TVIII1 (193-196)AH2 (211-216)O6 (201-286)S2 (236-241)TIV8 (243-246)TIV7 (241-244)TIV10 (255-258)TIV9 (244-247)O1 (262-264)S6 (283-289)AH4 (296-304)S5 (277-280)TIV11 (280-283)S4 (273-274)S7 (292-293)TIV1 (149-152)Updating...
connected with : NaN
molecule tags Cell adhesion
source organism Streptococcus pyogenes
publication title Streptococcal M1 Protein Constructs a Pathological Host Fibrinogen Network
pubmed doi rcsb
molecule keywords FIBRINOGEN ALPHA CHAIN
total genus 72
structure length 312
sequence length 312
chains with identical sequence E, H, K
ec nomenclature
pdb deposition date 2010-08-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 2xnxB01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 2xnxB02
2XNXC 2XNXB 1FIDA 2J3UA 1FZGC 1FZGB 3GHGC 1Z3UA 1FZFC 3BVHC 3BVHB 2Z4EC 2Z4EB 3HUSC 2J3OA 4R9TA 1RF0B 1FZEC 2J1GA 4EPUA 2J64A 2OYHB 2JHHC 1FIBA 1Z3SA 1RE3C 1RE3B 2WNPF 4M7FA 2D39A 1FICA 1RE4B 1RE4C 1RF1C 1RF1B 2J3FD 4JYOX 2HODC 2HODB 4JZCA 1N73C 1N73B 2J3FA 2HPCC 2HPCB 1RF0C 2OYHC 2J61A 1JC9A 2GY7A 1M1JC 1M1JB 2J5ZA 2J3GA 4M7HA 2FIBA 2OYIC 1FZBC 1FZBB 2J0HA 2OYIB 2JHMF 1LT9C 1LT9B 2J2PA 2FFDB 1N86C 1N86B 1FZDA 4NYTA 1FZCC 1FZCB 2Q9IC 2Q9IB 2JHLF 2J0YA 1FZFB 1LTJC 1LTJB 4R9JA 3E1IC 3E1IB 2J60A 2JHIF 3HUSB 2J61B 1LWUC 1LWUB 3FIBA 3H32C 3H32B 2H43C 2H43B 1FZEB 1FZAC 1FZAB 2FFDC 2JHKF 2HLOC 2HLOB 2J0GA 4ZFGA
chains in the Genus database with same CATH superfamily
2XNXC 2XNXB 1FIDA 2J3UA 1FZGC 1FZGB 3GHGC 3GHGB 1Z3UA 1FZFC 3BVHC 3BVHB 2Z4EC 2Z4EB 3HUSC 2J3OA 4R9TA 1RF0B 1FZEC 2J1GA 4EPUA 2J64A 2OYHB 2JHHC 1FIBA 1Z3SA 1RE3C 1RE3B 2WNPF 4M7FA 2D39A 1FICA 1RE4B 1RE4C 1RF1C 1RF1B 2J3FD 4JYOX 2HODC 2HODB 4JZCA 1N73C 1N73B 2J3FA 2HPCC 2HPCB 1RF0C 2OYHC 2J61A 1JC9A 2GY7A 1M1JC 1M1JB 2J5ZA 2J3GA 4M7HA 2FIBA 2OYIC 1FZBC 1FZBB 2J0HA 2OYIB 2JHMF 1LT9C 1LT9B 2J2PA 2FFDB 1N86C 1N86B 1FZDA 4NYTA 1FZCC 1FZCB 2Q9IC 2Q9IB 2JHLF 2J0YA 1FZFB 1LTJC 1LTJB 4R9JA 3E1IC 3E1IB 2J60A 2JHIF 3HUSB 2J61B 1LWUC 1LWUB 3FIBA 3H32C 3H32B 2H43C 2H43B 1FZEB 1FZAC 1FZAB 2FFDC 2JHKF 2HLOC 2HLOB 2J0GA 4ZFGA
chains in the Genus database with same CATH topology
2XNXC 2XNXB 1FIDA 2J3UA 1FZGC 1FZGB 3GHGC 1Z3UA 1FZFC 3BVHC 3BVHB 2Z4EC 2Z4EB 3HUSC 2J3OA 4R9TA 1RF0B 1FZEC 2J1GA 4EPUA 2J64A 2OYHB 2JHHC 1FIBA 1Z3SA 1RE3C 1RE3B 2WNPF 4M7FA 2D39A 1FICA 1RE4B 1RE4C 1RF1C 1RF1B 2J3FD 4JYOX 2HODC 2HODB 4JZCA 1N73C 1N73B 2J3FA 2HPCC 2HPCB 1RF0C 2OYHC 2J61A 1JC9A 2GY7A 1M1JC 1M1JB 2J5ZA 2J3GA 4M7HA 2FIBA 2OYIC 1FZBC 1FZBB 2J0HA 2OYIB 2JHMF 1LT9C 1LT9B 2J2PA 2FFDB 1N86C 1N86B 1FZDA 4NYTA 1FZCC 1FZCB 2Q9IC 2Q9IB 2JHLF 2J0YA 1FZFB 1LTJC 1LTJB 4R9JA 3E1IC 3E1IB 2J60A 2JHIF 3HUSB 2J61B 1LWUC 1LWUB 3FIBA 3H32C 3H32B 2H43C 2H43B 1FZEB 1FZAC 1FZAB 2FFDC 2JHKF 2HLOC 2HLOB 2J0GA 4ZFGA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2XNX C;  2XNX B;  1FID A;  2J3U A;  1FZG C;  1FZG B;  3GHG C;  1Z3U A;  1FZF C;  3BVH C;  3BVH B;  2Z4E C;  2Z4E B;  3HUS C;  2J3O A;  4R9T A;  1RF0 B;  1FZE C;  2J1G A;  4EPU A;  2J64 A;  2OYH B;  2JHH C;  1FIB A;  1Z3S A;  1RE3 C;  1RE3 B;  2WNP F;  4M7F A;  2D39 A;  1FIC A;  1RE4 B;  1RE4 C;  1RF1 C;  1RF1 B;  2J3F D;  4JYO X;  2HOD C;  2HOD B;  4JZC A;  1N73 C;  1N73 B;  2J3F A;  2HPC C;  2HPC B;  1RF0 C;  2OYH C;  2J61 A;  1JC9 A;  2GY7 A;  1M1J C;  1M1J B;  2J5Z A;  2J3G A;  4M7H A;  2FIB A;  2OYI C;  1FZB C;  1FZB B;  2J0H A;  2OYI B;  2JHM F;  1LT9 C;  1LT9 B;  2J2P A;  2FFD B;  1N86 C;  1N86 B;  1FZD A;  4NYT A;  1FZC C;  1FZC B;  2Q9I C;  2Q9I B;  2JHL F;  2J0Y A;  1FZF B;  1LTJ C;  1LTJ B;  4R9J A;  3E1I C;  3E1I B;  2J60 A;  2JHI F;  3HUS B;  2J61 B;  1LWU C;  1LWU B;  3FIB A;  3H32 C;  3H32 B;  2H43 C;  2H43 B;  1FZE B;  1FZA C;  1FZA B;  2FFD C;  2JHK F;  2HLO C;  2HLO B;  2J0G A;  4ZFG A; 
#chains in the Genus database with same CATH topology
 2XNX C;  2XNX B;  1FID A;  2J3U A;  1FZG C;  1FZG B;  3GHG C;  3GHG B;  1Z3U A;  1FZF C;  3BVH C;  3BVH B;  2Z4E C;  2Z4E B;  3HUS C;  2J3O A;  4R9T A;  1RF0 B;  1FZE C;  2J1G A;  4EPU A;  2J64 A;  2OYH B;  2JHH C;  1FIB A;  1Z3S A;  1RE3 C;  1RE3 B;  2WNP F;  4M7F A;  2D39 A;  1FIC A;  1RE4 B;  1RE4 C;  1RF1 C;  1RF1 B;  2J3F D;  4JYO X;  2HOD C;  2HOD B;  4JZC A;  1N73 C;  1N73 B;  2J3F A;  2HPC C;  2HPC B;  1RF0 C;  2OYH C;  2J61 A;  1JC9 A;  2GY7 A;  1M1J C;  1M1J B;  2J5Z A;  2J3G A;  4M7H A;  2FIB A;  2OYI C;  1FZB C;  1FZB B;  2J0H A;  2OYI B;  2JHM F;  1LT9 C;  1LT9 B;  2J2P A;  2FFD B;  1N86 C;  1N86 B;  1FZD A;  4NYT A;  1FZC C;  1FZC B;  2Q9I C;  2Q9I B;  2JHL F;  2J0Y A;  1FZF B;  1LTJ C;  1LTJ B;  4R9J A;  3E1I C;  3E1I B;  2J60 A;  2JHI F;  3HUS B;  2J61 B;  1LWU C;  1LWU B;  3FIB A;  3H32 C;  3H32 B;  2H43 C;  2H43 B;  1FZE B;  1FZA C;  1FZA B;  2FFD C;  2JHK F;  2HLO C;  2HLO B;  2J0G A;  4ZFG A; 
#chains in the Genus database with same CATH homology
 2XNX C;  2XNX B;  1FID A;  2J3U A;  1FZG C;  1FZG B;  3GHG C;  1Z3U A;  1FZF C;  3BVH C;  3BVH B;  2Z4E C;  2Z4E B;  3HUS C;  2J3O A;  4R9T A;  1RF0 B;  1FZE C;  2J1G A;  4EPU A;  2J64 A;  2OYH B;  2JHH C;  1FIB A;  1Z3S A;  1RE3 C;  1RE3 B;  2WNP F;  4M7F A;  2D39 A;  1FIC A;  1RE4 B;  1RE4 C;  1RF1 C;  1RF1 B;  2J3F D;  4JYO X;  2HOD C;  2HOD B;  4JZC A;  1N73 C;  1N73 B;  2J3F A;  2HPC C;  2HPC B;  1RF0 C;  2OYH C;  2J61 A;  1JC9 A;  2GY7 A;  1M1J C;  1M1J B;  2J5Z A;  2J3G A;  4M7H A;  2FIB A;  2OYI C;  1FZB C;  1FZB B;  2J0H A;  2OYI B;  2JHM F;  1LT9 C;  1LT9 B;  2J2P A;  2FFD B;  1N86 C;  1N86 B;  1FZD A;  4NYT A;  1FZC C;  1FZC B;  2Q9I C;  2Q9I B;  2JHL F;  2J0Y A;  1FZF B;  1LTJ C;  1LTJ B;  4R9J A;  3E1I C;  3E1I B;  2J60 A;  2JHI F;  3HUS B;  2J61 B;  1LWU C;  1LWU B;  3FIB A;  3H32 C;  3H32 B;  2H43 C;  2H43 B;  1FZE B;  1FZA C;  1FZA B;  2FFD C;  2JHK F;  2HLO C;  2HLO B;  2J0G A;  4ZFG A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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