2J3GA

L-ficolin
Total Genus 63

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
213
structure length
213
Chain Sequence
GPRTCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCHTSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVRPA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
O6 (73-101)S3 (117-123)AH1 (80-86)O4 (80-108)TIV2 (109-112)S2 (102-109)S1 (92-98)S8 (196-198)S9 (201-203)TIV1 (98-101)TIV4 (123-126)TI'1 (112-115)TI1 (143-146)S5 (148-149)S6 (164-172)EMPTYO1 (130-132)AH2 (134-139)TI'2 (192-195)AH3 (152-159)TI2 (172-175)TIV5 (160-163)S7 (176-187)TI3 (204-207)3H1 (190-192)TIV6 (208-211)3H2 (211-213)S4 (141-142)TIV3 (111-114)Updating...
connected with : NaN
molecule tags Lectin
source organism Homo sapiens
publication title Structural Insights Into the Innate Immune Recognition Specificities of L- and H-Ficolins.
pubmed doi rcsb
molecule keywords FICOLIN-2
total genus 63
structure length 213
sequence length 213
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2006-08-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 2j3gA01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 2j3gA02
2FIBA 2OYIB 2J0GA 2J2PA 1M1JB 2OYHC 2XNXB 1FZFC 4NYTA 2HODB 2J60A 1LT9B 1FICA 1N86C 2J0YA 1N86B 2J3FD 2J3OA 3HUSC 4R9JA 3HUSB 2JHMF 1FIBA 1FZEC 1FZCB 2J61B 1FZGC 2J64A 2GY7A 2J0HA 2JHHC 1Z3UA 3GHGC 4M7FA 1RF0C 1LWUC 1LWUB 2J1GA 2OYIC 1M1JC 1Z3SA 4M7HA 4R9TA 2XNXC 2FFDB 2J5ZA 2Q9IB 2HODC 1JC9A 1LT9C 2J3UA 4EPUA 1FZAB 1FZCC 1LTJB 2HPCB 2H43B 3FIBA 1RF1B 2JHKF 3E1IB 2FFDC 2Q9IC 2HLOC 2HLOB 1FZAC 2J61A 3BVHB 1LTJC 2HPCC 2J3FA 2H43C 2Z4EB 1RF1C 1N73B 3H32B 1RE4B 2D39A 1FZBC 1FZDA 3E1IC 4JZCA 1FZFB 1FZBB 4JYOX 2WNPF 1FIDA 2JHLF 1FZEB 1RE3C 1RE3B 3BVHC 1FZGB 1RF0B 2JHIF 2Z4EC 2J3GA 2OYHB 4ZFGA 1N73C 3H32C 1RE4C
chains in the Genus database with same CATH superfamily
2FIBA 2OYIB 2J0GA 2J2PA 1M1JB 2OYHC 2XNXB 1FZFC 4NYTA 2HODB 2J60A 1LT9B 1FICA 1N86C 2J0YA 1N86B 2J3FD 2J3OA 3HUSC 4R9JA 3HUSB 2JHMF 1FIBA 1FZEC 1FZCB 2J61B 1FZGC 2J64A 2GY7A 2J0HA 2JHHC 1Z3UA 3GHGC 4M7FA 1RF0C 1LWUC 1LWUB 2J1GA 2OYIC 1M1JC 1Z3SA 4M7HA 4R9TA 2XNXC 2FFDB 2J5ZA 2Q9IB 2HODC 1JC9A 1LT9C 2J3UA 4EPUA 1FZAB 1FZCC 1LTJB 2HPCB 2H43B 3FIBA 1RF1B 2JHKF 3E1IB 2FFDC 2Q9IC 2HLOC 2HLOB 1FZAC 2J61A 3BVHB 1LTJC 2HPCC 2J3FA 2H43C 2Z4EB 1RF1C 1N73B 3H32B 1RE4B 2D39A 1FZBC 1FZDA 3E1IC 4JZCA 1FZFB 1FZBB 4JYOX 2WNPF 1FIDA 2JHLF 1FZEB 1RE3C 1RE3B 3BVHC 1FZGB 1RF0B 2JHIF 3GHGB 2J3GA 2Z4EC 2OYHB 4ZFGA 1N73C 3H32C 1RE4C
chains in the Genus database with same CATH topology
2FIBA 2OYIB 2J0GA 2J2PA 1M1JB 2OYHC 2XNXB 1FZFC 4NYTA 2HODB 2J60A 1LT9B 1FICA 1N86C 2J0YA 1N86B 2J3FD 2J3OA 3HUSC 4R9JA 3HUSB 2JHMF 1FIBA 1FZEC 1FZCB 2J61B 1FZGC 2J64A 2GY7A 2J0HA 2JHHC 1Z3UA 3GHGC 4M7FA 1RF0C 1LWUC 1LWUB 2J1GA 2OYIC 1M1JC 1Z3SA 4M7HA 4R9TA 2XNXC 2FFDB 2J5ZA 2Q9IB 2HODC 1JC9A 1LT9C 2J3UA 4EPUA 1FZAB 1FZCC 1LTJB 2HPCB 2H43B 3FIBA 1RF1B 2JHKF 3E1IB 2FFDC 2Q9IC 2HLOC 2HLOB 1FZAC 2J61A 3BVHB 1LTJC 2HPCC 2J3FA 2H43C 2Z4EB 1RF1C 1N73B 3H32B 1RE4B 2D39A 1FZBC 1FZDA 3E1IC 4JZCA 1FZFB 1FZBB 4JYOX 2WNPF 1FIDA 2JHLF 1FZEB 1RE3C 1RE3B 3BVHC 1FZGB 1RF0B 2JHIF 2Z4EC 2J3GA 2OYHB 4ZFGA 1N73C 3H32C 1RE4C
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2FIB A;  2OYI B;  2J0G A;  2J2P A;  1M1J B;  2OYH C;  2XNX B;  1FZF C;  4NYT A;  2HOD B;  2J60 A;  1LT9 B;  1FIC A;  1N86 C;  2J0Y A;  1N86 B;  2J3F D;  2J3O A;  3HUS C;  4R9J A;  3HUS B;  2JHM F;  1FIB A;  1FZE C;  1FZC B;  2J61 B;  1FZG C;  2J64 A;  2GY7 A;  2J0H A;  2JHH C;  1Z3U A;  3GHG C;  4M7F A;  1RF0 C;  1LWU C;  1LWU B;  2J1G A;  2OYI C;  1M1J C;  1Z3S A;  4M7H A;  4R9T A;  2XNX C;  2FFD B;  2J5Z A;  2Q9I B;  2HOD C;  1JC9 A;  1LT9 C;  2J3U A;  4EPU A;  1FZA B;  1FZC C;  1LTJ B;  2HPC B;  2H43 B;  3FIB A;  1RF1 B;  2JHK F;  3E1I B;  2FFD C;  2Q9I C;  2HLO C;  2HLO B;  1FZA C;  2J61 A;  3BVH B;  1LTJ C;  2HPC C;  2J3F A;  2H43 C;  2Z4E B;  1RF1 C;  1N73 B;  3H32 B;  1RE4 B;  2D39 A;  1FZB C;  1FZD A;  3E1I C;  4JZC A;  1FZF B;  1FZB B;  4JYO X;  2WNP F;  1FID A;  2JHL F;  1FZE B;  1RE3 C;  1RE3 B;  3BVH C;  1FZG B;  1RF0 B;  2JHI F;  2Z4E C;  2J3G A;  2OYH B;  4ZFG A;  1N73 C;  3H32 C;  1RE4 C; 
#chains in the Genus database with same CATH topology
 2FIB A;  2OYI B;  2J0G A;  2J2P A;  1M1J B;  2OYH C;  2XNX B;  1FZF C;  4NYT A;  2HOD B;  2J60 A;  1LT9 B;  1FIC A;  1N86 C;  2J0Y A;  1N86 B;  2J3F D;  2J3O A;  3HUS C;  4R9J A;  3HUS B;  2JHM F;  1FIB A;  1FZE C;  1FZC B;  2J61 B;  1FZG C;  2J64 A;  2GY7 A;  2J0H A;  2JHH C;  1Z3U A;  3GHG C;  4M7F A;  1RF0 C;  1LWU C;  1LWU B;  2J1G A;  2OYI C;  1M1J C;  1Z3S A;  4M7H A;  4R9T A;  2XNX C;  2FFD B;  2J5Z A;  2Q9I B;  2HOD C;  1JC9 A;  1LT9 C;  2J3U A;  4EPU A;  1FZA B;  1FZC C;  1LTJ B;  2HPC B;  2H43 B;  3FIB A;  1RF1 B;  2JHK F;  3E1I B;  2FFD C;  2Q9I C;  2HLO C;  2HLO B;  1FZA C;  2J61 A;  3BVH B;  1LTJ C;  2HPC C;  2J3F A;  2H43 C;  2Z4E B;  1RF1 C;  1N73 B;  3H32 B;  1RE4 B;  2D39 A;  1FZB C;  1FZD A;  3E1I C;  4JZC A;  1FZF B;  1FZB B;  4JYO X;  2WNP F;  1FID A;  2JHL F;  1FZE B;  1RE3 C;  1RE3 B;  3BVH C;  1FZG B;  1RF0 B;  2JHI F;  3GHG B;  2J3G A;  2Z4E C;  2OYH B;  4ZFG A;  1N73 C;  3H32 C;  1RE4 C; 
#chains in the Genus database with same CATH homology
 2FIB A;  2OYI B;  2J0G A;  2J2P A;  1M1J B;  2OYH C;  2XNX B;  1FZF C;  4NYT A;  2HOD B;  2J60 A;  1LT9 B;  1FIC A;  1N86 C;  2J0Y A;  1N86 B;  2J3F D;  2J3O A;  3HUS C;  4R9J A;  3HUS B;  2JHM F;  1FIB A;  1FZE C;  1FZC B;  2J61 B;  1FZG C;  2J64 A;  2GY7 A;  2J0H A;  2JHH C;  1Z3U A;  3GHG C;  4M7F A;  1RF0 C;  1LWU C;  1LWU B;  2J1G A;  2OYI C;  1M1J C;  1Z3S A;  4M7H A;  4R9T A;  2XNX C;  2FFD B;  2J5Z A;  2Q9I B;  2HOD C;  1JC9 A;  1LT9 C;  2J3U A;  4EPU A;  1FZA B;  1FZC C;  1LTJ B;  2HPC B;  2H43 B;  3FIB A;  1RF1 B;  2JHK F;  3E1I B;  2FFD C;  2Q9I C;  2HLO C;  2HLO B;  1FZA C;  2J61 A;  3BVH B;  1LTJ C;  2HPC C;  2J3F A;  2H43 C;  2Z4E B;  1RF1 C;  1N73 B;  3H32 B;  1RE4 B;  2D39 A;  1FZB C;  1FZD A;  3E1I C;  4JZC A;  1FZF B;  1FZB B;  4JYO X;  2WNP F;  1FID A;  2JHL F;  1FZE B;  1RE3 C;  1RE3 B;  3BVH C;  1FZG B;  1RF0 B;  2JHI F;  2Z4E C;  2J3G A;  2OYH B;  4ZFG A;  1N73 C;  3H32 C;  1RE4 C;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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