3G5OA

The crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2866) from mycobacterium tuberculosis
Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
92
structure length
92
Chain Sequence
LMRILPISTIKGKLNEFVDAVSSTQDQITITKNGAPAAVLVGADEWESLQETLYWLAQPGIRESIAEADADIASGRTYGEDEIRAEFGVPRR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (13-16)S1 (8-12)AH2 (19-29)TIV1 (37-40)EMPTYS3 (41-47)AH3 (49-63)AH4 (67-80)TII1 (16-19)S2 (33-38)TII2 (64-67)AH5 (86-93)Updating...
connected with : NaN
molecule tags Toxin/antitoxin
source organism Mycobacterium tuberculosis
publication title The crystal structure of the toxin-antitoxin complex RelBE2 (Rv2865-2866) from Mycobacterium tuberculosis
rcsb
molecule keywords Uncharacterized protein Rv2865
total genus 26
structure length 92
sequence length 92
chains with identical sequence D
ec nomenclature
pdb deposition date 2009-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02604 PhdYeFM_antitox Antitoxin Phd_YefM, type II toxin-antitoxin system
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.170 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Arc Repressor Mutant 3g5oA02
3.40.1620.10 Alpha Beta 3-Layer(aba) Sandwich YefM-like fold YefM-like domain 3g5oA01
3HS2A 4ZLXA 3K33B 3KH2E 2A6QA 3OEIE 3HRYA 4ZM0A 3OEIA 3D55A 3G5OA 3CTOA 4ZM2A 3K6QA 2ODKA
chains in the Genus database with same CATH superfamily
4NRTA 4UVPB 2AN7A 3UR0A 2JXGA 2JXIA 4UI3C 4ZM0A 4HL5C 3IR7A 4QPXA 4HLFC 5ADTB 3NO7A 4ZLXA 1MNTA 2BJ3A 2BJ7A 2CAJA 1SH2A 4LQ3A 1U9PA 2CA9A 1MYKA 2JBVA 4L2KC 2K9IA 4L2GC 3H5YA 4KZQC 5ADRB 1BDVA 2BNZA 3QOQA 3FT7A 4UI6C 4UI7C 2H3AA 2HZVA 1ARQA 4HLHC 3HRYA 2WVBA 4FXEA 3UQSA 2WVDA 2RBFA 4D8JA 4UI8C 1OHNA 2BSQE 2KELA 3OEIA 3LJPA 5FPFC 2BA3A 1X93A 2ZIXB 3OD2A 4L32C 2ADLA 2HZAA 4L34C 4HLMC 2KKEA 2K1OA 2BJ9A 2JXHA 1NLAA 2WVEA 3H87C 3HS2A 4L2FC 3VW4A 4O4RA 2A6QA 1B28A 5C5RC 4ZM2A 4HKIC 4L33C 2WVCA 4HLGC 3H5XA 1SH3A 4L10C 4L0IC 2K29A 4HKNC 3VEAA 2A2BA 3BSOA 2UUTA 2Q2KA 4L0TC 3BSNA 3NAIA 3K6QA 2ODKA 2K5JA 1IRQA 1EA4A 3K33B 2BNWA 3UPFA 1ARRA 3D55A 3G5OA 3CTOA 3GXQA 2WVFA 1BDTA 1QTGA 2KOEA 4UI4C 2BJ1A 4LRVA 2CAXA 2CADA 4ME7E 4NRUA 2AY0A 1OG7A 5C5PC 4KZUC 3LGHA 1MYLA 1Q16A 4LQ9A 1SIWA 1B01A 4L0BC 4MJWA 3SFGA 4HKKB 2WK4A 3NNEA 3VEBA 4UI5C 3NAHA 3QIDA 2CKWA 4HMHC 3FMTA 2B43A 1Q5VA 1PARA 3SFUA 5ADQB 4L0VC 1BAZA 3OEIE 2GPEA 4L31C 4HV0A 2UUWA 2CPGA 4L0SC 1SH0A 2H1OE 3HJ6A 3KH2E 4L09C 2BJ8A 1P94A 5ADSB 4HLKC 4AAIA 4KZLC 2K6LA 5C5QC
chains in the Genus database with same CATH topology
4NRTA 1SIWA 2AN7A 3UR0A 1OHNA 3BSOA 4MJWA 3SFGA 2UUTA 2Q2KA 3OEIA 2WK4A 3LJPA 3NAIA 3NNEA 3BSNA 3K6QA 4ZM0A 3IR7A 4QPXA 3NAHA 2ODKA 3NO7A 4ZLXA 3QIDA 4LQ3A 1SH2A 2CKWA 3K33B 3UPFA 2ADLA 2KKEA 2B43A 3G5OA 3CTOA 3D55A 2JBVA 3SFUA 3HS2A 2KOEA 3H5YA 4O4RA 2A6QA 3OEIE 4ZM2A 2UUWA 4LRVA 1SH0A 2H3AA 3H5XA 1SH3A 3KH2E 4NRUA 3HRYA 1OG7A 4AAIA 4LQ9A 3UQSA 1Q16A 2A2BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HS2 A;  4ZLX A;  3K33 B;  3KH2 E;  2A6Q A;  3OEI E;  3HRY A;  4ZM0 A;  3OEI A;  3D55 A;  3G5O A;  3CTO A;  4ZM2 A;  3K6Q A;  2ODK A; 
#chains in the Genus database with same CATH topology
 4NRT A;  4UVP B;  2AN7 A;  3UR0 A;  2JXG A;  2JXI A;  4UI3 C;  4ZM0 A;  4HL5 C;  3IR7 A;  4QPX A;  4HLF C;  5ADT B;  3NO7 A;  4ZLX A;  1MNT A;  2BJ3 A;  2BJ7 A;  2CAJ A;  1SH2 A;  4LQ3 A;  1U9P A;  2CA9 A;  1MYK A;  2JBV A;  4L2K C;  2K9I A;  4L2G C;  3H5Y A;  4KZQ C;  5ADR B;  1BDV A;  2BNZ A;  3QOQ A;  3FT7 A;  4UI6 C;  4UI7 C;  2H3A A;  2HZV A;  1ARQ A;  4HLH C;  3HRY A;  2WVB A;  4FXE A;  3UQS A;  2WVD A;  2RBF A;  4D8J A;  4UI8 C;  1OHN A;  2BSQ E;  2KEL A;  3OEI A;  3LJP A;  5FPF C;  2BA3 A;  1X93 A;  2ZIX B;  3OD2 A;  4L32 C;  2ADL A;  2HZA A;  4L34 C;  4HLM C;  2KKE A;  2K1O A;  2BJ9 A;  2JXH A;  1NLA A;  2WVE A;  3H87 C;  3HS2 A;  4L2F C;  3VW4 A;  4O4R A;  2A6Q A;  1B28 A;  5C5R C;  4ZM2 A;  4HKI C;  4L33 C;  2WVC A;  4HLG C;  3H5X A;  1SH3 A;  4L10 C;  4L0I C;  2K29 A;  4HKN C;  3VEA A;  2A2B A;  3BSO A;  2UUT A;  2Q2K A;  4L0T C;  3BSN A;  3NAI A;  3K6Q A;  2ODK A;  2K5J A;  1IRQ A;  1EA4 A;  3K33 B;  2BNW A;  3UPF A;  1ARR A;  3D55 A;  3G5O A;  3CTO A;  3GXQ A;  2WVF A;  1BDT A;  1QTG A;  2KOE A;  4UI4 C;  2BJ1 A;  4LRV A;  2CAX A;  2CAD A;  4ME7 E;  4NRU A;  2AY0 A;  1OG7 A;  5C5P C;  4KZU C;  3LGH A;  1MYL A;  1Q16 A;  4LQ9 A;  1SIW A;  1B01 A;  4L0B C;  4MJW A;  3SFG A;  4HKK B;  2WK4 A;  3NNE A;  3VEB A;  4UI5 C;  3NAH A;  3QID A;  2CKW A;  4HMH C;  3FMT A;  2B43 A;  1Q5V A;  1PAR A;  3SFU A;  5ADQ B;  4L0V C;  1BAZ A;  3OEI E;  2GPE A;  4L31 C;  4HV0 A;  2UUW A;  2CPG A;  4L0S C;  1SH0 A;  2H1O E;  3HJ6 A;  3KH2 E;  4L09 C;  2BJ8 A;  1P94 A;  5ADS B;  4HLK C;  4AAI A;  4KZL C;  2K6L A;  5C5Q C; 
#chains in the Genus database with same CATH homology
 4NRT A;  1SIW A;  2AN7 A;  3UR0 A;  1OHN A;  3BSO A;  4MJW A;  3SFG A;  2UUT A;  2Q2K A;  3OEI A;  2WK4 A;  3LJP A;  3NAI A;  3NNE A;  3BSN A;  3K6Q A;  4ZM0 A;  3IR7 A;  4QPX A;  3NAH A;  2ODK A;  3NO7 A;  4ZLX A;  3QID A;  4LQ3 A;  1SH2 A;  2CKW A;  3K33 B;  3UPF A;  2ADL A;  2KKE A;  2B43 A;  3G5O A;  3CTO A;  3D55 A;  2JBV A;  3SFU A;  3HS2 A;  2KOE A;  3H5Y A;  4O4R A;  2A6Q A;  3OEI E;  4ZM2 A;  2UUW A;  4LRV A;  1SH0 A;  2H3A A;  3H5X A;  1SH3 A;  3KH2 E;  4NRU A;  3HRY A;  1OG7 A;  4AAI A;  4LQ9 A;  3UQS A;  1Q16 A;  2A2B A; 
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