3G5OA

The crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2866) from mycobacterium tuberculosis
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
92
structure length
92
Chain Sequence
LMRILPISTIKGKLNEFVDAVSSTQDQITITKNGAPAAVLVGADEWESLQETLYWLAQPGIRESIAEADADIASGRTYGEDEIRAEFGVPRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The crystal structure of the toxin-antitoxin complex RelBE2 (Rv2865-2866) from Mycobacterium tuberculosis
rcsb
molecule tags Toxin/antitoxin
source organism Mycobacterium tuberculosis
molecule keywords Uncharacterized protein Rv2865
total genus 26
structure length 92
sequence length 92
chains with identical sequence D
ec nomenclature
pdb deposition date 2009-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02604 PhdYeFM_antitox Antitoxin Phd_YefM, type II toxin-antitoxin system
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.170 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Arc Repressor Mutant 3g5oA02
3.40.1620.10 Alpha Beta 3-Layer(aba) Sandwich YefM-like fold YefM-like domain 3g5oA01
4ZM0A 2A6QA 3HRYA 3OEIA 2ODKA 3K6QA 4ZM2A 3D55A 3KH2E 3OEIE 3G5OA 4ZLXA 3CTOA 3K33B 3HS2A
chains in the Genus database with same CATH superfamily
4L0IC 3H87C 2HZAA 2WVDA 3UQSA 1X93A 2A2BA 1BAZA 3H5YA 4UI5C 5C5QC 1OHNA 2BJ3A 2BA3A 4KZUC 1BDVA 4L2GC 3HJ6A 4HKIC 2BJ9A 4HLMC 3OEIE 3H5XA 3G5OA 3NO7A 1P94A 4NRUA 3CTOA 4L0SC 3NAIA 2H3AA 4ZM2A 4FXEA 4L09C 4L33C 3FT7A 5ADSB 1MYKA 2WK4A 4NRTA 2AN7A 3HS2A 3VEBA 4HLKC 3OD2A 1PARA 4UVPB 2CAJA 2BSQE 2H1OE 4L32C 3K33B 3VEAA 3K6QA 4HLGC 3UR0A 2K6LA 1SH0A 2CPGA 2K29A 4UI8C 3BSOA 4LQ9A 4KZQC 2ZIXB 3UPFA 3IR7A 2JXHA 4L0VC 4ZLXA 1SIWA 4UI3C 3SFUA 4HLHC 3VW4A 2UUWA 2WVCA 4QPXA 1B01A 2K1OA 1OG7A 4UI6C 3HRYA 4AAIA 2WVEA 4HV0A 4L10C 1EA4A 5C5RC 4L0BC 1ARQA 2CKWA 2KELA 2KOEA 2B43A 2A6QA 2RBFA 4HKNC 4HMHC 4L0TC 4ZM0A 2UUTA 2KKEA 3GXQA 4O4RA 1BDTA 2JBVA 4UI7C 4L31C 5ADQB 1SH2A 1QTGA 4KZLC 2WVFA 2BJ7A 4HLFC 2BJ8A 3LJPA 3OEIA 2BNZA 2ODKA 4L2KC 5ADTB 5ADRB 3NNEA 3NAHA 3D55A 4UI4C 2K5JA 1B28A 4MJWA 2CADA 1MYLA 2BJ1A 4L34C 1ARRA 2K9IA 4LRVA 2JXGA 3BSNA 2GPEA 4L2FC 3SFGA 2BNWA 4HKKB 2ADLA 3FMTA 4D8JA 2JXIA 4LQ3A 1U9PA 3KH2E 1Q16A 2AY0A 1Q5VA 1MNTA 3QIDA 2Q2KA 2WVBA 5C5PC 1IRQA 2CA9A 2HZVA 5FPFC 3QOQA 2CAXA 4HL5C 1NLAA 1SH3A 3LGHA 4ME7E
chains in the Genus database with same CATH topology
1OG7A 3HRYA 4AAIA 4LRVA 3UQSA 3BSNA 3SFGA 3K33B 2CKWA 2KOEA 4ZM0A 2B43A 2A2BA 2A6QA 3H5YA 3K6QA 2ADLA 2UUTA 2KKEA 3UR0A 4O4RA 1SH0A 2JBVA 1OHNA 3BSOA 4LQ9A 4MJWA 4LQ3A 3KH2E 3UPFA 1SH2A 3IR7A 1Q16A 3QIDA 2Q2KA 3OEIE 3H5XA 3G5OA 3NO7A 1SIWA 4NRUA 3CTOA 4ZLXA 3SFUA 3NAIA 3LJPA 3OEIA 2ODKA 2H3AA 4ZM2A 3NNEA 3NAHA 2UUWA 3D55A 3HS2A 4QPXA 2WK4A 1SH3A 4NRTA 2AN7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZM0 A;  2A6Q A;  3HRY A;  3OEI A;  2ODK A;  3K6Q A;  4ZM2 A;  3D55 A;  3KH2 E;  3OEI E;  3G5O A;  4ZLX A;  3CTO A;  3K33 B;  3HS2 A; 
#chains in the Genus database with same CATH topology
 4L0I C;  3H87 C;  2HZA A;  2WVD A;  3UQS A;  1X93 A;  2A2B A;  1BAZ A;  3H5Y A;  4UI5 C;  5C5Q C;  1OHN A;  2BJ3 A;  2BA3 A;  4KZU C;  1BDV A;  4L2G C;  3HJ6 A;  4HKI C;  2BJ9 A;  4HLM C;  3OEI E;  3H5X A;  3G5O A;  3NO7 A;  1P94 A;  4NRU A;  3CTO A;  4L0S C;  3NAI A;  2H3A A;  4ZM2 A;  4FXE A;  4L09 C;  4L33 C;  3FT7 A;  5ADS B;  1MYK A;  2WK4 A;  4NRT A;  2AN7 A;  3HS2 A;  3VEB A;  4HLK C;  3OD2 A;  1PAR A;  4UVP B;  2CAJ A;  2BSQ E;  2H1O E;  4L32 C;  3K33 B;  3VEA A;  3K6Q A;  4HLG C;  3UR0 A;  2K6L A;  1SH0 A;  2CPG A;  2K29 A;  4UI8 C;  3BSO A;  4LQ9 A;  4KZQ C;  2ZIX B;  3UPF A;  3IR7 A;  2JXH A;  4L0V C;  4ZLX A;  1SIW A;  4UI3 C;  3SFU A;  4HLH C;  3VW4 A;  2UUW A;  2WVC A;  4QPX A;  1B01 A;  2K1O A;  1OG7 A;  4UI6 C;  3HRY A;  4AAI A;  2WVE A;  4HV0 A;  4L10 C;  1EA4 A;  5C5R C;  4L0B C;  1ARQ A;  2CKW A;  2KEL A;  2KOE A;  2B43 A;  2A6Q A;  2RBF A;  4HKN C;  4HMH C;  4L0T C;  4ZM0 A;  2UUT A;  2KKE A;  3GXQ A;  4O4R A;  1BDT A;  2JBV A;  4UI7 C;  4L31 C;  5ADQ B;  1SH2 A;  1QTG A;  4KZL C;  2WVF A;  2BJ7 A;  4HLF C;  2BJ8 A;  3LJP A;  3OEI A;  2BNZ A;  2ODK A;  4L2K C;  5ADT B;  5ADR B;  3NNE A;  3NAH A;  3D55 A;  4UI4 C;  2K5J A;  1B28 A;  4MJW A;  2CAD A;  1MYL A;  2BJ1 A;  4L34 C;  1ARR A;  2K9I A;  4LRV A;  2JXG A;  3BSN A;  2GPE A;  4L2F C;  3SFG A;  2BNW A;  4HKK B;  2ADL A;  3FMT A;  4D8J A;  2JXI A;  4LQ3 A;  1U9P A;  3KH2 E;  1Q16 A;  2AY0 A;  1Q5V A;  1MNT A;  3QID A;  2Q2K A;  2WVB A;  5C5P C;  1IRQ A;  2CA9 A;  2HZV A;  5FPF C;  3QOQ A;  2CAX A;  4HL5 C;  1NLA A;  1SH3 A;  3LGH A;  4ME7 E; 
#chains in the Genus database with same CATH homology
 1OG7 A;  3HRY A;  4AAI A;  4LRV A;  3UQS A;  3BSN A;  3SFG A;  3K33 B;  2CKW A;  2KOE A;  4ZM0 A;  2B43 A;  2A2B A;  2A6Q A;  3H5Y A;  3K6Q A;  2ADL A;  2UUT A;  2KKE A;  3UR0 A;  4O4R A;  1SH0 A;  2JBV A;  1OHN A;  3BSO A;  4LQ9 A;  4MJW A;  4LQ3 A;  3KH2 E;  3UPF A;  1SH2 A;  3IR7 A;  1Q16 A;  3QID A;  2Q2K A;  3OEI E;  3H5X A;  3G5O A;  3NO7 A;  1SIW A;  4NRU A;  3CTO A;  4ZLX A;  3SFU A;  3NAI A;  3LJP A;  3OEI A;  2ODK A;  2H3A A;  4ZM2 A;  3NNE A;  3NAH A;  2UUW A;  3D55 A;  3HS2 A;  4QPX A;  2WK4 A;  1SH3 A;  4NRT A;  2AN7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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