3G5OA

The crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2866) from mycobacterium tuberculosis
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
92
structure length
92
Chain Sequence
LMRILPISTIKGKLNEFVDAVSSTQDQITITKNGAPAAVLVGADEWESLQETLYWLAQPGIRESIAEADADIASGRTYGEDEIRAEFGVPRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The crystal structure of the toxin-antitoxin complex RelBE2 (Rv2865-2866) from Mycobacterium tuberculosis
rcsb
molecule tags Toxin/antitoxin
source organism Mycobacterium tuberculosis
molecule keywords Uncharacterized protein Rv2865
total genus 26
structure length 92
sequence length 92
chains with identical sequence D
ec nomenclature
pdb deposition date 2009-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02604 PhdYeFM_antitox Antitoxin Phd_YefM, type II toxin-antitoxin system
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.170 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Arc Repressor Mutant 3g5oA02
3.40.1620.10 Alpha Beta 3-Layer(aba) Sandwich YefM-like fold YefM-like domain 3g5oA01
3HRYA 3OEIE 3K6QA 3KH2E 3CTOA 4ZM0A 4ZM2A 4ZLXA 3K33B 2A6QA 2ODKA 3D55A 3OEIA 3HS2A 3G5OA
chains in the Genus database with same CATH superfamily
2BJ1A 3OEIE 2A2BA 2WK4A 2K1OA 2ADLA 2JXGA 4L0TC 4HLHC 4L0IC 2WVDA 3NAHA 3HJ6A 4HLFC 2CPGA 4HKIC 4UI6C 3NAIA 1Q16A 3D55A 4FXEA 2K9IA 1BAZA 4O4RA 1BDTA 1MNTA 4NRTA 2CADA 2UUWA 3LJPA 2K29A 4L2KC 5ADRB 2H1OE 4L09C 2ODKA 2H3AA 3QIDA 3OEIA 4L32C 4UI8C 1OG7A 2AY0A 2A6QA 4L34C 1ARRA 2B43A 4L10C 1MYLA 4L33C 1PARA 5ADSB 2WVEA 3KH2E 3QOQA 4ZM2A 5ADTB 2AN7A 1NLAA 1Q5VA 2JXHA 1U9PA 2CAXA 4KZQC 1ARQA 5C5PC 2CA9A 2BJ7A 3UPFA 2CKWA 1BDVA 3VW4A 4L0VC 3LGHA 3H87C 4HKNC 2ZIXB 2UUTA 4HV0A 5FPFC 1IRQA 4UI4C 3UR0A 2BJ3A 1QTGA 3K6QA 3H5YA 4L0SC 2K6LA 4LQ9A 3SFUA 3H5XA 4LQ3A 1X93A 4QPXA 3VEBA 3G5OA 4LRVA 4UVPB 2BNZA 2JBVA 3UQSA 2BJ9A 3NO7A 1MYKA 2K5JA 1B28A 2WVFA 2WVBA 3HRYA 5ADQB 3FT7A 4NRUA 3K33B 1B01A 2KKEA 4HLKC 4UI3C 3HS2A 4AAIA 3IR7A 4HKKB 4ME7E 2JXIA 5C5RC 2GPEA 1P94A 4L2FC 1SH0A 2WVCA 5C5QC 1SH2A 1OHNA 3GXQA 2BNWA 2KELA 3SFGA 1EA4A 2CAJA 4MJWA 3BSOA 4HL5C 4UI7C 3OD2A 2RBFA 4UI5C 4L2GC 2KOEA 2HZVA 3CTOA 1SH3A 1SIWA 4ZM0A 4ZLXA 2HZAA 4KZLC 4L0BC 4L31C 3BSNA 4HMHC 3FMTA 2Q2KA 2BSQE 4KZUC 2BA3A 2BJ8A 3VEAA 4HLMC 3NNEA 4D8JA 4HLGC
chains in the Genus database with same CATH topology
3OEIE 3K6QA 3H5YA 2A2BA 4LQ9A 3SFUA 3H5XA 4LQ3A 1SH2A 2ODKA 2WK4A 1OHNA 2ADLA 2H3AA 3SFGA 3QIDA 4QPXA 3OEIA 3G5OA 4LRVA 4MJWA 3UR0A 1OG7A 2JBVA 3BSOA 3UQSA 3NO7A 2A6QA 3NAHA 2KOEA 2B43A 3HRYA 3KH2E 3CTOA 1SH3A 1SIWA 4NRUA 3K33B 4ZM0A 4ZM2A 4ZLXA 2AN7A 2KKEA 1Q16A 3NAIA 3D55A 3HS2A 4O4RA 4AAIA 3BSNA 3IR7A 3UPFA 2CKWA 2Q2KA 4NRTA 2UUWA 2UUTA 3LJPA 3NNEA 1SH0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HRY A;  3OEI E;  3K6Q A;  3KH2 E;  3CTO A;  4ZM0 A;  4ZM2 A;  4ZLX A;  3K33 B;  2A6Q A;  2ODK A;  3D55 A;  3OEI A;  3HS2 A;  3G5O A; 
#chains in the Genus database with same CATH topology
 2BJ1 A;  3OEI E;  2A2B A;  2WK4 A;  2K1O A;  2ADL A;  2JXG A;  4L0T C;  4HLH C;  4L0I C;  2WVD A;  3NAH A;  3HJ6 A;  4HLF C;  2CPG A;  4HKI C;  4UI6 C;  3NAI A;  1Q16 A;  3D55 A;  4FXE A;  2K9I A;  1BAZ A;  4O4R A;  1BDT A;  1MNT A;  4NRT A;  2CAD A;  2UUW A;  3LJP A;  2K29 A;  4L2K C;  5ADR B;  2H1O E;  4L09 C;  2ODK A;  2H3A A;  3QID A;  3OEI A;  4L32 C;  4UI8 C;  1OG7 A;  2AY0 A;  2A6Q A;  4L34 C;  1ARR A;  2B43 A;  4L10 C;  1MYL A;  4L33 C;  1PAR A;  5ADS B;  2WVE A;  3KH2 E;  3QOQ A;  4ZM2 A;  5ADT B;  2AN7 A;  1NLA A;  1Q5V A;  2JXH A;  1U9P A;  2CAX A;  4KZQ C;  1ARQ A;  5C5P C;  2CA9 A;  2BJ7 A;  3UPF A;  2CKW A;  1BDV A;  3VW4 A;  4L0V C;  3LGH A;  3H87 C;  4HKN C;  2ZIX B;  2UUT A;  4HV0 A;  5FPF C;  1IRQ A;  4UI4 C;  3UR0 A;  2BJ3 A;  1QTG A;  3K6Q A;  3H5Y A;  4L0S C;  2K6L A;  4LQ9 A;  3SFU A;  3H5X A;  4LQ3 A;  1X93 A;  4QPX A;  3VEB A;  3G5O A;  4LRV A;  4UVP B;  2BNZ A;  2JBV A;  3UQS A;  2BJ9 A;  3NO7 A;  1MYK A;  2K5J A;  1B28 A;  2WVF A;  2WVB A;  3HRY A;  5ADQ B;  3FT7 A;  4NRU A;  3K33 B;  1B01 A;  2KKE A;  4HLK C;  4UI3 C;  3HS2 A;  4AAI A;  3IR7 A;  4HKK B;  4ME7 E;  2JXI A;  5C5R C;  2GPE A;  1P94 A;  4L2F C;  1SH0 A;  2WVC A;  5C5Q C;  1SH2 A;  1OHN A;  3GXQ A;  2BNW A;  2KEL A;  3SFG A;  1EA4 A;  2CAJ A;  4MJW A;  3BSO A;  4HL5 C;  4UI7 C;  3OD2 A;  2RBF A;  4UI5 C;  4L2G C;  2KOE A;  2HZV A;  3CTO A;  1SH3 A;  1SIW A;  4ZM0 A;  4ZLX A;  2HZA A;  4KZL C;  4L0B C;  4L31 C;  3BSN A;  4HMH C;  3FMT A;  2Q2K A;  2BSQ E;  4KZU C;  2BA3 A;  2BJ8 A;  3VEA A;  4HLM C;  3NNE A;  4D8J A;  4HLG C; 
#chains in the Genus database with same CATH homology
 3OEI E;  3K6Q A;  3H5Y A;  2A2B A;  4LQ9 A;  3SFU A;  3H5X A;  4LQ3 A;  1SH2 A;  2ODK A;  2WK4 A;  1OHN A;  2ADL A;  2H3A A;  3SFG A;  3QID A;  4QPX A;  3OEI A;  3G5O A;  4LRV A;  4MJW A;  3UR0 A;  1OG7 A;  2JBV A;  3BSO A;  3UQS A;  3NO7 A;  2A6Q A;  3NAH A;  2KOE A;  2B43 A;  3HRY A;  3KH2 E;  3CTO A;  1SH3 A;  1SIW A;  4NRU A;  3K33 B;  4ZM0 A;  4ZM2 A;  4ZLX A;  2AN7 A;  2KKE A;  1Q16 A;  3NAI A;  3D55 A;  3HS2 A;  4O4R A;  4AAI A;  3BSN A;  3IR7 A;  3UPF A;  2CKW A;  2Q2K A;  4NRT A;  2UUW A;  2UUT A;  3LJP A;  3NNE A;  1SH0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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