3U33 | Genus

Total Genus 205

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	205
sequence length	540
structure length	540
Chain Sequence	MHWQTHTVFNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLASIGQQLGTAESLELGRLANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHNLAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTFAATPLLLQMLPAPFQDWTTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFSVPQSDAHLVLAQTAGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAIGWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQAGVYDLLSEAFVEVKGQDRYFDRAVRRLQQQLRKPAEELGREITHQLFLLGCGAQMLKYASPPMAQAWCQVMLDTRGGVRLSEQIQNDLLLRATGGVC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Oxidoreductase
source organism	Escherichia coli k-12
publication title	Flavin-induced oligomerization in Escherichia coli adaptive response protein AidB. pubmed doi rcsb
molecule keywords	Putative acyl-CoA dehydrogenase AidB
total genus	205
structure length	540
sequence length	540
chains with identical sequence	B, C, D, E, F, G, H, I, J, K, L
ec nomenclature	ec 1.3.99.-:
pdb deposition date	2011-10-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00441	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain
A	PF02770	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain
A	PF18158	AidB_N	Adaptive response protein AidB N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.110.20	Mainly Beta	Beta Barrel	Butyryl-CoA Dehydrogenase, subunit A; domain 2	Butyryl-CoA Dehydrogenase, subunit A; domain 2	3u33A03

5EZ3A 3U33A 3DJLA
chains in the Genus database with same CATH superfamily

3X0XA 2OR0A 3B96A 5EZ3A 3MDEA 2D29A 3MKHA 1WS9A 3FCJA 3SWOA 3EOMA 4ZXVA 4ZYJA 4U83A 3X0YA 4DOYA 1IVHA 3MPIA 4X28A 4RM7A 4X28C 4L1FA 2YYKA 1SIQA 3MXLA 2R0MA 2A1TA 4N5FA 3D9GA 3R7KA 2REHA 1EGDA 3OWAA 2Z1QA 3D9FA 4HR3A 4G5EA 3EONA 5K3IA 1EGEA 4KCFA 2CX9A 2JBSA 1R2JA 3HWCA 3MDDA 4NXLA 3D9EA 1EGCA 2RFQA 3II9A 2DVLA 4JEKA 1SIRA 2ZAFA 4KTOA 2YYIA 2JBRA 2JIFA 1BUCA 3DJLA 2C12A 5K3JA 1RX0A 1U8VA 4W9UA 2DDHA 4M9AA 4XVXA 3NF4A 3D6BA 3D9DA 2UXWA 3P4TA 5K3HA 1JQIA 4IV6A 2IX5A 3M9VA 4P13A 2YYMA 3AFEA 5K3GA 2JBTA 3AFFA 2FONA 2YYGA 3PFDA 2EBAA 3MPJA 2IX6A 1T9GA 3GNCA 3GQTA 2YYLA 3OIBA 1IS2A 1UKWA 4IRNA 4O5MA 2PG0A 3U33A 3SF6A 2C0UA 1UDYA 1W07A 2R0NA 2WBIA 2VIGA 2YYJA
chains in the Genus database with same CATH topology

5EZ3A 3U33A 3DJLA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5EZ3 A;  3U33 A;  3DJL A; 
#chains in the Genus database with same CATH topology
 3X0X A;  2OR0 A;  3B96 A;  5EZ3 A;  3MDE A;  2D29 A;  3MKH A;  1WS9 A;  3FCJ A;  3SWO A;  3EOM A;  4ZXV A;  4ZYJ A;  4U83 A;  3X0Y A;  4DOY A;  1IVH A;  3MPI A;  4X28 A;  4RM7 A;  4X28 C;  4L1F A;  2YYK A;  1SIQ A;  3MXL A;  2R0M A;  2A1T A;  4N5F A;  3D9G A;  3R7K A;  2REH A;  1EGD A;  3OWA A;  2Z1Q A;  3D9F A;  4HR3 A;  4G5E A;  3EON A;  5K3I A;  1EGE A;  4KCF A;  2CX9 A;  2JBS A;  1R2J A;  3HWC A;  3MDD A;  4NXL A;  3D9E A;  1EGC A;  2RFQ A;  3II9 A;  2DVL A;  4JEK A;  1SIR A;  2ZAF A;  4KTO A;  2YYI A;  2JBR A;  2JIF A;  1BUC A;  3DJL A;  2C12 A;  5K3J A;  1RX0 A;  1U8V A;  4W9U A;  2DDH A;  4M9A A;  4XVX A;  3NF4 A;  3D6B A;  3D9D A;  2UXW A;  3P4T A;  5K3H A;  1JQI A;  4IV6 A;  2IX5 A;  3M9V A;  4P13 A;  2YYM A;  3AFE A;  5K3G A;  2JBT A;  3AFF A;  2FON A;  2YYG A;  3PFD A;  2EBA A;  3MPJ A;  2IX6 A;  1T9G A;  3GNC A;  3GQT A;  2YYL A;  3OIB A;  1IS2 A;  1UKW A;  4IRN A;  4O5M A;  2PG0 A;  3U33 A;  3SF6 A;  2C0U A;  1UDY A;  1W07 A;  2R0N A;  2WBI A;  2VIG A;  2YYJ A; 
#chains in the Genus database with same CATH homology
 5EZ3 A;  3U33 A;  3DJL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3U33A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations