3NF4A

Crystal structure of acyl-coa dehydrogenase from mycobacterium thermoresistibile bound to flavin adenine dinucleotide
Total Genus 127
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
127
sequence length
378
structure length
369
Chain Sequence
MAVDRLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHSLSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFARTGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANEKIIDHGLGFLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords acyl-CoA dehydrogenase
publication title Increasing the structural coverage of tuberculosis drug targets.
pubmed doi rcsb
source organism Mycobacterium thermoresistibile
molecule tags Oxidoreductase
total genus 127
structure length 369
sequence length 378
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3nf4A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3nf4A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3nf4A02
3LGQA 4L38A 2A1TA 3L1TA 4U83A 2REHA 3S7WA 1OAHA 3OWMA 3D9GA 4L3YA 2YYJA 2RDZA 3D9FA 3PFDA 1EGCA 4IV6A 3MPIA 5K3IA 3UU9A 4XVXA 4Q4UA 2YYMA 1T9GA 5K3HA 3MMOA 1EGDA 3X0YA 2J7AA 1IS2A 1IVHA 3GNCA 3TORA 3HWCA 3LG1A 3EOMA 3P4TA 4KTOA 1GU6A 3D1IA 2JIFA 4ZYJA 3BNHA 2ZAFA 2ZO5A 4L3XA 2RFQA 1EGEA 4DOYA 2OR0A 2R0NA 3X0XA 3FO3A 3R7KA 1FS8A 2DVLA 4M9AA 4Q5BA 2YYLA 2JBSA 2VIGA 2RF7A 2E81A 3M9VA 1R2JA 4Q17A 1JQIA 4X28A 2IX5A 4Q1OA 4OO2A 2E80A 3BNFA 2IX6A 3OWAA 3SF6A 3MKHA 4W9UA 2CX9A 2D29A 1W07A 3D6BA 3AFFA 4N5FA 4IRNA 3MXLA 4G5EA 3D9DA 1WS9A 2DDHA 3MPJA 2C0UA 3AFEA 2C12A 2EBAA 3OIBA 3MDDA 2FONA 5K3GA 4WJYA 3B96A 3GQTA 3F29A 5K3JA 2OT4A 4O5MA 1FS7A 3SWOA 2UXWA 4P13A 2WBIA 3GM6A 3BNGA 3TTBA 1SIRA 4NXLA 3FCJA 1U8VA 2YYGA 3MDEA 3SCEA 1FS9A 4KCFA 3D9EA 1UDYA 3II9A 3NF4A 2JBRA 4JEKA 2PG0A 4RM7A 1QDBA 3UBRA 1UKWA 4L1FA 4ZXVA 1SIQA 3BNJA 4Q0TA 3EONA 2VR0A 3RKHA 1BUCA 4X28C 4L3ZA 2JBTA 2YYIA 4Q5CA 1RX0A 2YYKA 3SXQA 2Z1QA 4HR3A 2R0MA
chains in the Genus database with same CATH superfamily
3LGQA 4L38A 2F6LA 3C2PA 2A1TA 3CE2A 2R02A 3L1TA 4U83A 1Y0VA 4JIZA 2REHA 3S7WA 1OAHA 3OWMA 3D9GA 3C3LA 4L3YA 1PI1A 2YYJA 2CJ8A 4QICA 2RDZA 3D9FA 1RP3A 2OEVA 3PFDA 5M4PA 1PK0A 1EGCA 4IV6A 3MPIA 5K3IA 4LQSB 2BU7A 3UU9A 4XVXA 2R05A 5M4MA 4FF1A 4Q4UA 2YYMA 3CRLA 1T9GA 5K3HA 2XQRB 1EGDA 3X0YA 3MMOA 1GKXA 4E00A 1X90A 1RJ1A 1IS2A 1IVHA 1XFUA 2AZEA 2J7AA 4KSAA 3GNCA 2AO2A 3TORA 3HWCA 2Q8HA 3LG1A 4KS9A 3EOMA 3P4TA 4KTOA 1GU6A 3D1IA 4P79A 4AKHA 2JIFA 1X8ZA 4ZYJA 3X29A 3BNHA 2CJ7A 2FP1A 2ZAFA 2ZO5A 4L3XA 2RFQA 1EGEA 4DOYA 2R03A 2YGWA 4DZYA 2OR0A 2E0AA 2R0NA 3TZ5A 3X0XA 3FO3A 3R7KA 1FS8A 2BU2A 3C46A 4J1VA 2DVLA 5B5WA 2BU5A 4JIOA 1XFXA 1SC5A 4M9AA 4V25A 3TZ2A 4MPEA 4Q5BA 4AI6A 2YYLA 2JBSA 4E02A 3Q0AA 4HKSA 5GJWE 2VIGA 2RF7A 2E81A 4G97A 3M9VA 1R2JA 1SK6A 2LFWA 4Q17A 2Q8GA 3VADA 1JQIA 4X28A 2IX5A 2PNRA 4Q1OA 4FF3A 3VKGA 4OO2A 2BU8A 2E80A 3BNFA 4LQQB 3CRKA 2VF1A 2IX6A 3OWAA 4V26A 5BRKA 4FF2A 3SF6A 4KSFA 4HKRA 3MKHA 4W9UA 2CX9A 5EZ3A 4H7QA 2D29A 1W07A 5J6AA 3DJLA 2OJQA 3D6BA 2ZKJA 3AFFA 1XFVA 4N5FA 4IRNA 3MXLA 1K93A 4G5EA 3Q23A 4H85A 3D9DA 1JM6A 1WS9A 2DDHA 2EBFX 3MPJA 2C0UA 1Y8OA 3AFEA 2BU6A 2C12A 2EBAA 4FZ4A 2Q8IA 3OIBA 3MDDA 2FONA 2XS8A 5K3GA 4WJYA 3B96A 3GQTA 4AKGA 2CJ5A 2EBHX 2PO4A 3KMLA 3F29A 5K3JA 2OT4A 4AKIA 4O5MA 1FS7A 3SWOA 2UXWA 4P13A 5GJVE 5BRMA 2WBIA 2OEXA 2XS1A 3GM6A 1K8TA 1Y8PA 3Q24A 3TZ4A 4FF4A 3BNGA 1S26A 1Y8NA 2CJ6A 3TTBA 1SIRA 4NXLA 2FP2A 3D2RA 3FCJA 1LVCA 1U8VA 4MPNA 1XFWA 2YYGA 3MDEA 3SCEA 1XFZA 1FS9A 4KCFA 2Q8FA 3D9EA 1UDYA 3Q22A 3II9A 3NF4A 3N0RA 2JBRA 4MP7A 4MP2A 4JEKA 2QR4A 2PG0A 4RM7A 1QDBA 3UBRA 1UKWA 1X91A 2BTZA 4E01A 4L1FA 5J71A 3U33A 4ZXVA 1SIQA 2CJ4A 1K90A 2ZDXA 3BNJA 3EONA 1RJ4A 2VR0A 4Q0TA 3VKHA 3RKHA 1BUCA 2EC5A 4H81A 5M4KA 4X28C 1GKZA 2JBTA 2GBBA 2YYIA 2ZDYA 1R3BA 2HJNA 4L3ZA 4Q5CA 5B5VA 5B6BA 5M4NA 3SXQA 4MPCA 4F0XA 1RX0A 1GJVA 2YYKA 1XFYA 2Z1QA 3TZ0A 1XG2B 4HR3A 2R0MA
chains in the Genus database with same CATH topology
3LGQA 4L38A 2A1TA 3L1TA 4U83A 2REHA 3S7WA 1OAHA 3OWMA 3D9GA 4L3YA 2YYJA 2RDZA 3D9FA 3PFDA 1EGCA 4IV6A 3MPIA 5K3IA 3UU9A 4XVXA 4Q4UA 2YYMA 1T9GA 5K3HA 3MMOA 1EGDA 3X0YA 2J7AA 1IS2A 1IVHA 3GNCA 3TORA 3HWCA 3LG1A 3EOMA 3P4TA 4KTOA 1GU6A 3D1IA 2JIFA 4ZYJA 3BNHA 2ZAFA 2ZO5A 4L3XA 2RFQA 1EGEA 4DOYA 2OR0A 2R0NA 3X0XA 3FO3A 3R7KA 1FS8A 2DVLA 4M9AA 4Q5BA 2YYLA 2JBSA 2VIGA 2RF7A 2E81A 3M9VA 1R2JA 4Q17A 1JQIA 4X28A 2IX5A 4Q1OA 4OO2A 2E80A 3BNFA 2IX6A 3OWAA 3SF6A 3MKHA 4W9UA 2CX9A 2D29A 1W07A 3D6BA 3AFFA 4N5FA 4IRNA 3MXLA 4G5EA 3D9DA 1WS9A 2DDHA 3MPJA 2C0UA 3AFEA 2C12A 2EBAA 3OIBA 3MDDA 2FONA 5K3GA 4WJYA 3B96A 3GQTA 3F29A 5K3JA 2OT4A 4O5MA 1FS7A 3SWOA 2UXWA 4P13A 2WBIA 3GM6A 3BNGA 3TTBA 1SIRA 4NXLA 3FCJA 1U8VA 2YYGA 3MDEA 3SCEA 1FS9A 4KCFA 3D9EA 1UDYA 3II9A 3NF4A 2JBRA 4JEKA 2PG0A 4RM7A 1QDBA 3UBRA 1UKWA 4L1FA 4ZXVA 1SIQA 3BNJA 4Q0TA 3EONA 2VR0A 3RKHA 1BUCA 4X28C 4L3ZA 2JBTA 2YYIA 4Q5CA 1RX0A 2YYKA 3SXQA 2Z1QA 4HR3A 2R0MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LGQ A;  4L38 A;  2A1T A;  3L1T A;  4U83 A;  2REH A;  3S7W A;  1OAH A;  3OWM A;  3D9G A;  4L3Y A;  2YYJ A;  2RDZ A;  3D9F A;  3PFD A;  1EGC A;  4IV6 A;  3MPI A;  5K3I A;  3UU9 A;  4XVX A;  4Q4U A;  2YYM A;  1T9G A;  5K3H A;  3MMO A;  1EGD A;  3X0Y A;  2J7A A;  1IS2 A;  1IVH A;  3GNC A;  3TOR A;  3HWC A;  3LG1 A;  3EOM A;  3P4T A;  4KTO A;  1GU6 A;  3D1I A;  2JIF A;  4ZYJ A;  3BNH A;  2ZAF A;  2ZO5 A;  4L3X A;  2RFQ A;  1EGE A;  4DOY A;  2OR0 A;  2R0N A;  3X0X A;  3FO3 A;  3R7K A;  1FS8 A;  2DVL A;  4M9A A;  4Q5B A;  2YYL A;  2JBS A;  2VIG A;  2RF7 A;  2E81 A;  3M9V A;  1R2J A;  4Q17 A;  1JQI A;  4X28 A;  2IX5 A;  4Q1O A;  4OO2 A;  2E80 A;  3BNF A;  2IX6 A;  3OWA A;  3SF6 A;  3MKH A;  4W9U A;  2CX9 A;  2D29 A;  1W07 A;  3D6B A;  3AFF A;  4N5F A;  4IRN A;  3MXL A;  4G5E A;  3D9D A;  1WS9 A;  2DDH A;  3MPJ A;  2C0U A;  3AFE A;  2C12 A;  2EBA A;  3OIB A;  3MDD A;  2FON A;  5K3G A;  4WJY A;  3B96 A;  3GQT A;  3F29 A;  5K3J A;  2OT4 A;  4O5M A;  1FS7 A;  3SWO A;  2UXW A;  4P13 A;  2WBI A;  3GM6 A;  3BNG A;  3TTB A;  1SIR A;  4NXL A;  3FCJ A;  1U8V A;  2YYG A;  3MDE A;  3SCE A;  1FS9 A;  4KCF A;  3D9E A;  1UDY A;  3II9 A;  3NF4 A;  2JBR A;  4JEK A;  2PG0 A;  4RM7 A;  1QDB A;  3UBR A;  1UKW A;  4L1F A;  4ZXV A;  1SIQ A;  3BNJ A;  4Q0T A;  3EON A;  2VR0 A;  3RKH A;  1BUC A;  4X28 C;  4L3Z A;  2JBT A;  2YYI A;  4Q5C A;  1RX0 A;  2YYK A;  3SXQ A;  2Z1Q A;  4HR3 A;  2R0M A; 
#chains in the Genus database with same CATH topology
 3LGQ A;  4L38 A;  2F6L A;  3C2P A;  2A1T A;  3CE2 A;  2R02 A;  3L1T A;  4U83 A;  1Y0V A;  4JIZ A;  2REH A;  3S7W A;  1OAH A;  3OWM A;  3D9G A;  3C3L A;  4L3Y A;  1PI1 A;  2YYJ A;  2CJ8 A;  4QIC A;  2RDZ A;  3D9F A;  1RP3 A;  2OEV A;  3PFD A;  5M4P A;  1PK0 A;  1EGC A;  4IV6 A;  3MPI A;  5K3I A;  4LQS B;  2BU7 A;  3UU9 A;  4XVX A;  2R05 A;  5M4M A;  4FF1 A;  4Q4U A;  2YYM A;  3CRL A;  1T9G A;  5K3H A;  2XQR B;  1EGD A;  3X0Y A;  3MMO A;  1GKX A;  4E00 A;  1X90 A;  1RJ1 A;  1IS2 A;  1IVH A;  1XFU A;  2AZE A;  2J7A A;  4KSA A;  3GNC A;  2AO2 A;  3TOR A;  3HWC A;  2Q8H A;  3LG1 A;  4KS9 A;  3EOM A;  3P4T A;  4KTO A;  1GU6 A;  3D1I A;  4P79 A;  4AKH A;  2JIF A;  1X8Z A;  4ZYJ A;  3X29 A;  3BNH A;  2CJ7 A;  2FP1 A;  2ZAF A;  2ZO5 A;  4L3X A;  2RFQ A;  1EGE A;  4DOY A;  2R03 A;  2YGW A;  4DZY A;  2OR0 A;  2E0A A;  2R0N A;  3TZ5 A;  3X0X A;  3FO3 A;  3R7K A;  1FS8 A;  2BU2 A;  3C46 A;  4J1V A;  2DVL A;  5B5W A;  2BU5 A;  4JIO A;  1XFX A;  1SC5 A;  4M9A A;  4V25 A;  3TZ2 A;  4MPE A;  4Q5B A;  4AI6 A;  2YYL A;  2JBS A;  4E02 A;  3Q0A A;  4HKS A;  5GJW E;  2VIG A;  2RF7 A;  2E81 A;  4G97 A;  3M9V A;  1R2J A;  1SK6 A;  2LFW A;  4Q17 A;  2Q8G A;  3VAD A;  1JQI A;  4X28 A;  2IX5 A;  2PNR A;  4Q1O A;  4FF3 A;  3VKG A;  4OO2 A;  2BU8 A;  2E80 A;  3BNF A;  4LQQ B;  3CRK A;  2VF1 A;  2IX6 A;  3OWA A;  4V26 A;  5BRK A;  4FF2 A;  3SF6 A;  4KSF A;  4HKR A;  3MKH A;  4W9U A;  2CX9 A;  5EZ3 A;  4H7Q A;  2D29 A;  1W07 A;  5J6A A;  3DJL A;  2OJQ A;  3D6B A;  2ZKJ A;  3AFF A;  1XFV A;  4N5F A;  4IRN A;  3MXL A;  1K93 A;  4G5E A;  3Q23 A;  4H85 A;  3D9D A;  1JM6 A;  1WS9 A;  2DDH A;  2EBF X;  3MPJ A;  2C0U A;  1Y8O A;  3AFE A;  2BU6 A;  2C12 A;  2EBA A;  4FZ4 A;  2Q8I A;  3OIB A;  3MDD A;  2FON A;  2XS8 A;  5K3G A;  4WJY A;  3B96 A;  3GQT A;  4AKG A;  2CJ5 A;  2EBH X;  2PO4 A;  3KML A;  3F29 A;  5K3J A;  2OT4 A;  4AKI A;  4O5M A;  1FS7 A;  3SWO A;  2UXW A;  4P13 A;  5GJV E;  5BRM A;  2WBI A;  2OEX A;  2XS1 A;  3GM6 A;  1K8T A;  1Y8P A;  3Q24 A;  3TZ4 A;  4FF4 A;  3BNG A;  1S26 A;  1Y8N A;  2CJ6 A;  3TTB A;  1SIR A;  4NXL A;  2FP2 A;  3D2R A;  3FCJ A;  1LVC A;  1U8V A;  4MPN A;  1XFW A;  2YYG A;  3MDE A;  3SCE A;  1XFZ A;  1FS9 A;  4KCF A;  2Q8F A;  3D9E A;  1UDY A;  3Q22 A;  3II9 A;  3NF4 A;  3N0R A;  2JBR A;  4MP7 A;  4MP2 A;  4JEK A;  2QR4 A;  2PG0 A;  4RM7 A;  1QDB A;  3UBR A;  1UKW A;  1X91 A;  2BTZ A;  4E01 A;  4L1F A;  5J71 A;  3U33 A;  4ZXV A;  1SIQ A;  2CJ4 A;  1K90 A;  2ZDX A;  3BNJ A;  3EON A;  1RJ4 A;  2VR0 A;  4Q0T A;  3VKH A;  3RKH A;  1BUC A;  2EC5 A;  4H81 A;  5M4K A;  4X28 C;  1GKZ A;  2JBT A;  2GBB A;  2YYI A;  2ZDY A;  1R3B A;  2HJN A;  4L3Z A;  4Q5C A;  5B5V A;  5B6B A;  5M4N A;  3SXQ A;  4MPC A;  4F0X A;  1RX0 A;  1GJV A;  2YYK A;  1XFY A;  2Z1Q A;  3TZ0 A;  1XG2 B;  4HR3 A;  2R0M A; 
#chains in the Genus database with same CATH homology
 3LGQ A;  4L38 A;  2A1T A;  3L1T A;  4U83 A;  2REH A;  3S7W A;  1OAH A;  3OWM A;  3D9G A;  4L3Y A;  2YYJ A;  2RDZ A;  3D9F A;  3PFD A;  1EGC A;  4IV6 A;  3MPI A;  5K3I A;  3UU9 A;  4XVX A;  4Q4U A;  2YYM A;  1T9G A;  5K3H A;  3MMO A;  1EGD A;  3X0Y A;  2J7A A;  1IS2 A;  1IVH A;  3GNC A;  3TOR A;  3HWC A;  3LG1 A;  3EOM A;  3P4T A;  4KTO A;  1GU6 A;  3D1I A;  2JIF A;  4ZYJ A;  3BNH A;  2ZAF A;  2ZO5 A;  4L3X A;  2RFQ A;  1EGE A;  4DOY A;  2OR0 A;  2R0N A;  3X0X A;  3FO3 A;  3R7K A;  1FS8 A;  2DVL A;  4M9A A;  4Q5B A;  2YYL A;  2JBS A;  2VIG A;  2RF7 A;  2E81 A;  3M9V A;  1R2J A;  4Q17 A;  1JQI A;  4X28 A;  2IX5 A;  4Q1O A;  4OO2 A;  2E80 A;  3BNF A;  2IX6 A;  3OWA A;  3SF6 A;  3MKH A;  4W9U A;  2CX9 A;  2D29 A;  1W07 A;  3D6B A;  3AFF A;  4N5F A;  4IRN A;  3MXL A;  4G5E A;  3D9D A;  1WS9 A;  2DDH A;  3MPJ A;  2C0U A;  3AFE A;  2C12 A;  2EBA A;  3OIB A;  3MDD A;  2FON A;  5K3G A;  4WJY A;  3B96 A;  3GQT A;  3F29 A;  5K3J A;  2OT4 A;  4O5M A;  1FS7 A;  3SWO A;  2UXW A;  4P13 A;  2WBI A;  3GM6 A;  3BNG A;  3TTB A;  1SIR A;  4NXL A;  3FCJ A;  1U8V A;  2YYG A;  3MDE A;  3SCE A;  1FS9 A;  4KCF A;  3D9E A;  1UDY A;  3II9 A;  3NF4 A;  2JBR A;  4JEK A;  2PG0 A;  4RM7 A;  1QDB A;  3UBR A;  1UKW A;  4L1F A;  4ZXV A;  1SIQ A;  3BNJ A;  4Q0T A;  3EON A;  2VR0 A;  3RKH A;  1BUC A;  4X28 C;  4L3Z A;  2JBT A;  2YYI A;  4Q5C A;  1RX0 A;  2YYK A;  3SXQ A;  2Z1Q A;  4HR3 A;  2R0M A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...