3NF4A

Crystal structure of acyl-coa dehydrogenase from mycobacterium thermoresistibile bound to flavin adenine dinucleotide
Total Genus 127
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
127
sequence length
378
structure length
369
Chain Sequence
MAVDRLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHSLSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFARTGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANEKIIDHGLGFLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
source organism Mycobacterium thermoresistibile
publication title Increasing the structural coverage of tuberculosis drug targets.
pubmed doi rcsb
molecule keywords acyl-CoA dehydrogenase
total genus 127
structure length 369
sequence length 378
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 3nf4A01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 3nf4A03
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 3nf4A02
1T9GA 2D29A 4Q1OA 4L3YA 2C12A 3PFDA 4HR3A 2YYJA 1IS2A 4ZYJA 3NF4A 1JQIA 2RF7A 1GU6A 2YYLA 2EBAA 2JBRA 3S7WA 1QDBA 3M9VA 4L3ZA 4KCFA 4IRNA 3SWOA 3II9A 3D6BA 4KTOA 2E80A 1FS9A 4ZXVA 2Z1QA 2OR0A 4M9AA 4JEKA 3SCEA 1EGDA 3OWAA 3TTBA 2UXWA 2R0MA 3R7KA 3MPJA 5K3GA 3BNGA 4IV6A 1WS9A 3P4TA 2VR0A 2PG0A 2IX6A 2YYIA 5K3IA 3MXLA 1FS8A 4NXLA 4Q4UA 2WBIA 4DOYA 4L38A 4XVXA 3LG1A 3D9EA 1IVHA 3L1TA 3AFFA 3X0YA 3D9GA 2RDZA 2REHA 2E81A 3HWCA 2OT4A 4Q17A 3BNFA 4O5MA 3OWMA 3AFEA 1RX0A 3SXQA 2JIFA 1OAHA 2DDHA 3FCJA 1EGEA 2FONA 3D9DA 2VIGA 1W07A 2J7AA 2ZO5A 1R2JA 1EGCA 3UBRA 3SF6A 3MKHA 4L3XA 2YYGA 4L1FA 3D9FA 3F29A 3TORA 4N5FA 4Q0TA 1U8VA 2DVLA 4WJYA 3GNCA 2R0NA 4U83A 4Q5BA 1UKWA 3MPIA 3FO3A 3GQTA 3MMOA 2JBTA 2YYMA 1SIRA 1SIQA 3B96A 1BUCA 3D1IA 3LGQA 2C0UA 3BNJA 4Q5CA 2IX5A 2ZAFA 3GM6A 3MDDA 3MDEA 3EONA 2CX9A 2RFQA 4P13A 4RM7A 3X0XA 2JBSA 4W9UA 4OO2A 4X28C 1FS7A 2YYKA 3OIBA 3BNHA 5K3JA 4X28A 4G5EA 3EOMA 3RKHA 2A1TA 3UU9A 5K3HA 1UDYA
chains in the Genus database with same CATH superfamily
5B6BA 2VF1A 2FP1A 1T9GA 2D29A 4Q1OA 4L3YA 3Q23A 1GJVA 2C12A 2OJQA 2PNRA 2BU5A 3PFDA 4KSAA 4HR3A 2ZKJA 2YYJA 1IS2A 4ZYJA 3NF4A 1JQIA 1PK0A 1Y8NA 2GBBA 1GU6A 2RF7A 2YYLA 2EBAA 2R03A 5EZ3A 2JBRA 3S7WA 1XG2B 2R02A 1XFXA 4HKSA 1QDBA 2AZEA 3M9VA 4L3ZA 1X91A 4KCFA 4MPEA 4IRNA 3SWOA 4HKRA 4QICA 3II9A 4E01A 3D6BA 5M4MA 2Q8GA 4KTOA 2E80A 1FS9A 4ZXVA 4MPNA 2Z1QA 2Q8HA 2OR0A 4M9AA 4JEKA 3SCEA 1EGDA 3OWAA 2BU6A 3TTBA 2UXWA 2HJNA 2R0MA 1RJ1A 3R7KA 1X8ZA 4FF2A 3MPJA 2CJ7A 5J6AA 2R05A 1PI1A 5K3GA 3BNGA 4IV6A 1WS9A 5M4NA 3P4TA 5GJVE 2XS1A 2VR0A 2PG0A 3X29A 2IX6A 2YYIA 5K3IA 3MXLA 1FS8A 4FZ4A 3TZ4A 4NXLA 2EBHX 2WBIA 4DOYA 4L38A 4Q4UA 4XVXA 1RJ4A 2AO2A 3D9EA 3LG1A 3C46A 1IVHA 3L1TA 3AFFA 3X0YA 3VKHA 3D9GA 3KMLA 4LQSB 3VKGA 1K90A 4MPCA 1Y8OA 5B5VA 4FF1A 1LVCA 2REHA 2RDZA 4J1VA 3UU9A 4MP7A 1XFZA 3VADA 2E81A 3TZ0A 5J71A 3HWCA 4V25A 2OT4A 4H81A 4Q17A 2Q8FA 4E00A 3Q22A 3BNFA 3D2RA 4O5MA 3TZ5A 3OWMA 4AKHA 3AFEA 1RX0A 2XQRB 3CRKA 1K93A 3SXQA 3TZ2A 2JIFA 1JM6A 1R3BA 1S26A 4AKIA 1OAHA 2DDHA 3FCJA 1K8TA 1EGEA 2FONA 3D9DA 2FP2A 2VIGA 1W07A 2J7AA 2ZO5A 2CJ5A 1R2JA 1EGCA 4P79A 5BRMA 3UBRA 4H7QA 5M4PA 3SF6A 1XFYA 3MKHA 4MP2A 4L3XA 2YYGA 4L1FA 2PO4A 1Y0VA 4AKGA 4G97A 3D9FA 3F29A 3TORA 4N5FA 2BU2A 4Q0TA 3CRLA 1U8VA 2DVLA 4WJYA 4AI6A 2OEXA 2CJ4A 3GNCA 2R0NA 4KS9A 4U83A 2BTZA 4KSFA 4Q5BA 2CJ8A 4V26A 1UKWA 3MPIA 2CJ6A 3FO3A 3GQTA 3MMOA 4LQQB 2JBTA 4FF3A 1SC5A 2YYMA 1SIRA 1SIQA 3B96A 1BUCA 2F6LA 2ZDXA 3D1IA 3LGQA 4JIOA 2LFWA 2QR4A 2C0UA 5GJWE 4DZYA 2BU7A 2YGWA 5M4KA 1XFWA 3BNJA 3CE2A 4Q5CA 4FF4A 2IX5A 1RP3A 2ZAFA 2EBFX 5B5WA 3GM6A 3MDDA 4E02A 1Y8PA 2BU8A 2EC5A 4JIZA 3MDEA 5BRKA 3C2PA 3EONA 2CX9A 3Q24A 4H85A 2RFQA 4P13A 4RM7A 3X0XA 2JBSA 2XS8A 4W9UA 3Q0AA 4OO2A 3C3LA 4X28C 1FS7A 2YYKA 1GKXA 1X90A 3OIBA 2ZDYA 3BNHA 1XFVA 4F0XA 5K3JA 4X28A 4G5EA 1GKZA 1SK6A 3EOMA 3N0RA 2E0AA 2OEVA 2A1TA 1XFUA 3RKHA 3DJLA 3U33A 5K3HA 2Q8IA 1UDYA
chains in the Genus database with same CATH topology
1T9GA 2D29A 4Q1OA 4L3YA 2C12A 3PFDA 4HR3A 2YYJA 1IS2A 4ZYJA 3NF4A 1JQIA 2RF7A 1GU6A 2YYLA 2EBAA 2JBRA 3S7WA 1QDBA 3M9VA 4L3ZA 4KCFA 4IRNA 3SWOA 3II9A 3D6BA 4KTOA 2E80A 1FS9A 4ZXVA 2Z1QA 2OR0A 4M9AA 4JEKA 3SCEA 1EGDA 3OWAA 3TTBA 2UXWA 2R0MA 3R7KA 3MPJA 5K3GA 3BNGA 4IV6A 1WS9A 3P4TA 2VR0A 2PG0A 2IX6A 2YYIA 5K3IA 3MXLA 1FS8A 4NXLA 4Q4UA 2WBIA 4DOYA 4L38A 4XVXA 3LG1A 3D9EA 1IVHA 3L1TA 3AFFA 3X0YA 3D9GA 2RDZA 2REHA 2E81A 3HWCA 2OT4A 4Q17A 3BNFA 4O5MA 3OWMA 3AFEA 1RX0A 3SXQA 2JIFA 1OAHA 2DDHA 3FCJA 1EGEA 2FONA 3D9DA 2VIGA 1W07A 2J7AA 2ZO5A 1R2JA 1EGCA 3UBRA 3SF6A 3MKHA 4L3XA 2YYGA 4L1FA 3D9FA 3F29A 3TORA 4N5FA 4Q0TA 1U8VA 2DVLA 4WJYA 3GNCA 2R0NA 4U83A 4Q5BA 1UKWA 3MPIA 3FO3A 3GQTA 3MMOA 2JBTA 2YYMA 1SIRA 1SIQA 3B96A 1BUCA 3D1IA 3LGQA 2C0UA 3BNJA 4Q5CA 2IX5A 2ZAFA 3GM6A 3MDDA 3MDEA 3EONA 2CX9A 2RFQA 4P13A 4RM7A 3X0XA 2JBSA 4W9UA 4OO2A 4X28C 1FS7A 2YYKA 3OIBA 3BNHA 5K3JA 4X28A 4G5EA 3EOMA 3RKHA 2A1TA 3UU9A 5K3HA 1UDYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T9G A;  2D29 A;  4Q1O A;  4L3Y A;  2C12 A;  3PFD A;  4HR3 A;  2YYJ A;  1IS2 A;  4ZYJ A;  3NF4 A;  1JQI A;  2RF7 A;  1GU6 A;  2YYL A;  2EBA A;  2JBR A;  3S7W A;  1QDB A;  3M9V A;  4L3Z A;  4KCF A;  4IRN A;  3SWO A;  3II9 A;  3D6B A;  4KTO A;  2E80 A;  1FS9 A;  4ZXV A;  2Z1Q A;  2OR0 A;  4M9A A;  4JEK A;  3SCE A;  1EGD A;  3OWA A;  3TTB A;  2UXW A;  2R0M A;  3R7K A;  3MPJ A;  5K3G A;  3BNG A;  4IV6 A;  1WS9 A;  3P4T A;  2VR0 A;  2PG0 A;  2IX6 A;  2YYI A;  5K3I A;  3MXL A;  1FS8 A;  4NXL A;  4Q4U A;  2WBI A;  4DOY A;  4L38 A;  4XVX A;  3LG1 A;  3D9E A;  1IVH A;  3L1T A;  3AFF A;  3X0Y A;  3D9G A;  2RDZ A;  2REH A;  2E81 A;  3HWC A;  2OT4 A;  4Q17 A;  3BNF A;  4O5M A;  3OWM A;  3AFE A;  1RX0 A;  3SXQ A;  2JIF A;  1OAH A;  2DDH A;  3FCJ A;  1EGE A;  2FON A;  3D9D A;  2VIG A;  1W07 A;  2J7A A;  2ZO5 A;  1R2J A;  1EGC A;  3UBR A;  3SF6 A;  3MKH A;  4L3X A;  2YYG A;  4L1F A;  3D9F A;  3F29 A;  3TOR A;  4N5F A;  4Q0T A;  1U8V A;  2DVL A;  4WJY A;  3GNC A;  2R0N A;  4U83 A;  4Q5B A;  1UKW A;  3MPI A;  3FO3 A;  3GQT A;  3MMO A;  2JBT A;  2YYM A;  1SIR A;  1SIQ A;  3B96 A;  1BUC A;  3D1I A;  3LGQ A;  2C0U A;  3BNJ A;  4Q5C A;  2IX5 A;  2ZAF A;  3GM6 A;  3MDD A;  3MDE A;  3EON A;  2CX9 A;  2RFQ A;  4P13 A;  4RM7 A;  3X0X A;  2JBS A;  4W9U A;  4OO2 A;  4X28 C;  1FS7 A;  2YYK A;  3OIB A;  3BNH A;  5K3J A;  4X28 A;  4G5E A;  3EOM A;  3RKH A;  2A1T A;  3UU9 A;  5K3H A;  1UDY A; 
#chains in the Genus database with same CATH topology
 5B6B A;  2VF1 A;  2FP1 A;  1T9G A;  2D29 A;  4Q1O A;  4L3Y A;  3Q23 A;  1GJV A;  2C12 A;  2OJQ A;  2PNR A;  2BU5 A;  3PFD A;  4KSA A;  4HR3 A;  2ZKJ A;  2YYJ A;  1IS2 A;  4ZYJ A;  3NF4 A;  1JQI A;  1PK0 A;  1Y8N A;  2GBB A;  1GU6 A;  2RF7 A;  2YYL A;  2EBA A;  2R03 A;  5EZ3 A;  2JBR A;  3S7W A;  1XG2 B;  2R02 A;  1XFX A;  4HKS A;  1QDB A;  2AZE A;  3M9V A;  4L3Z A;  1X91 A;  4KCF A;  4MPE A;  4IRN A;  3SWO A;  4HKR A;  4QIC A;  3II9 A;  4E01 A;  3D6B A;  5M4M A;  2Q8G A;  4KTO A;  2E80 A;  1FS9 A;  4ZXV A;  4MPN A;  2Z1Q A;  2Q8H A;  2OR0 A;  4M9A A;  4JEK A;  3SCE A;  1EGD A;  3OWA A;  2BU6 A;  3TTB A;  2UXW A;  2HJN A;  2R0M A;  1RJ1 A;  3R7K A;  1X8Z A;  4FF2 A;  3MPJ A;  2CJ7 A;  5J6A A;  2R05 A;  1PI1 A;  5K3G A;  3BNG A;  4IV6 A;  1WS9 A;  5M4N A;  3P4T A;  5GJV E;  2XS1 A;  2VR0 A;  2PG0 A;  3X29 A;  2IX6 A;  2YYI A;  5K3I A;  3MXL A;  1FS8 A;  4FZ4 A;  3TZ4 A;  4NXL A;  2EBH X;  2WBI A;  4DOY A;  4L38 A;  4Q4U A;  4XVX A;  1RJ4 A;  2AO2 A;  3D9E A;  3LG1 A;  3C46 A;  1IVH A;  3L1T A;  3AFF A;  3X0Y A;  3VKH A;  3D9G A;  3KML A;  4LQS B;  3VKG A;  1K90 A;  4MPC A;  1Y8O A;  5B5V A;  4FF1 A;  1LVC A;  2REH A;  2RDZ A;  4J1V A;  3UU9 A;  4MP7 A;  1XFZ A;  3VAD A;  2E81 A;  3TZ0 A;  5J71 A;  3HWC A;  4V25 A;  2OT4 A;  4H81 A;  4Q17 A;  2Q8F A;  4E00 A;  3Q22 A;  3BNF A;  3D2R A;  4O5M A;  3TZ5 A;  3OWM A;  4AKH A;  3AFE A;  1RX0 A;  2XQR B;  3CRK A;  1K93 A;  3SXQ A;  3TZ2 A;  2JIF A;  1JM6 A;  1R3B A;  1S26 A;  4AKI A;  1OAH A;  2DDH A;  3FCJ A;  1K8T A;  1EGE A;  2FON A;  3D9D A;  2FP2 A;  2VIG A;  1W07 A;  2J7A A;  2ZO5 A;  2CJ5 A;  1R2J A;  1EGC A;  4P79 A;  5BRM A;  3UBR A;  4H7Q A;  5M4P A;  3SF6 A;  1XFY A;  3MKH A;  4MP2 A;  4L3X A;  2YYG A;  4L1F A;  2PO4 A;  1Y0V A;  4AKG A;  4G97 A;  3D9F A;  3F29 A;  3TOR A;  4N5F A;  2BU2 A;  4Q0T A;  3CRL A;  1U8V A;  2DVL A;  4WJY A;  4AI6 A;  2OEX A;  2CJ4 A;  3GNC A;  2R0N A;  4KS9 A;  4U83 A;  2BTZ A;  4KSF A;  4Q5B A;  2CJ8 A;  4V26 A;  1UKW A;  3MPI A;  2CJ6 A;  3FO3 A;  3GQT A;  3MMO A;  4LQQ B;  2JBT A;  4FF3 A;  1SC5 A;  2YYM A;  1SIR A;  1SIQ A;  3B96 A;  1BUC A;  2F6L A;  2ZDX A;  3D1I A;  3LGQ A;  4JIO A;  2LFW A;  2QR4 A;  2C0U A;  5GJW E;  4DZY A;  2BU7 A;  2YGW A;  5M4K A;  1XFW A;  3BNJ A;  3CE2 A;  4Q5C A;  4FF4 A;  2IX5 A;  1RP3 A;  2ZAF A;  2EBF X;  5B5W A;  3GM6 A;  3MDD A;  4E02 A;  1Y8P A;  2BU8 A;  2EC5 A;  4JIZ A;  3MDE A;  5BRK A;  3C2P A;  3EON A;  2CX9 A;  3Q24 A;  4H85 A;  2RFQ A;  4P13 A;  4RM7 A;  3X0X A;  2JBS A;  2XS8 A;  4W9U A;  3Q0A A;  4OO2 A;  3C3L A;  4X28 C;  1FS7 A;  2YYK A;  1GKX A;  1X90 A;  3OIB A;  2ZDY A;  3BNH A;  1XFV A;  4F0X A;  5K3J A;  4X28 A;  4G5E A;  1GKZ A;  1SK6 A;  3EOM A;  3N0R A;  2E0A A;  2OEV A;  2A1T A;  1XFU A;  3RKH A;  3DJL A;  3U33 A;  5K3H A;  2Q8I A;  1UDY A; 
#chains in the Genus database with same CATH homology
 1T9G A;  2D29 A;  4Q1O A;  4L3Y A;  2C12 A;  3PFD A;  4HR3 A;  2YYJ A;  1IS2 A;  4ZYJ A;  3NF4 A;  1JQI A;  2RF7 A;  1GU6 A;  2YYL A;  2EBA A;  2JBR A;  3S7W A;  1QDB A;  3M9V A;  4L3Z A;  4KCF A;  4IRN A;  3SWO A;  3II9 A;  3D6B A;  4KTO A;  2E80 A;  1FS9 A;  4ZXV A;  2Z1Q A;  2OR0 A;  4M9A A;  4JEK A;  3SCE A;  1EGD A;  3OWA A;  3TTB A;  2UXW A;  2R0M A;  3R7K A;  3MPJ A;  5K3G A;  3BNG A;  4IV6 A;  1WS9 A;  3P4T A;  2VR0 A;  2PG0 A;  2IX6 A;  2YYI A;  5K3I A;  3MXL A;  1FS8 A;  4NXL A;  4Q4U A;  2WBI A;  4DOY A;  4L38 A;  4XVX A;  3LG1 A;  3D9E A;  1IVH A;  3L1T A;  3AFF A;  3X0Y A;  3D9G A;  2RDZ A;  2REH A;  2E81 A;  3HWC A;  2OT4 A;  4Q17 A;  3BNF A;  4O5M A;  3OWM A;  3AFE A;  1RX0 A;  3SXQ A;  2JIF A;  1OAH A;  2DDH A;  3FCJ A;  1EGE A;  2FON A;  3D9D A;  2VIG A;  1W07 A;  2J7A A;  2ZO5 A;  1R2J A;  1EGC A;  3UBR A;  3SF6 A;  3MKH A;  4L3X A;  2YYG A;  4L1F A;  3D9F A;  3F29 A;  3TOR A;  4N5F A;  4Q0T A;  1U8V A;  2DVL A;  4WJY A;  3GNC A;  2R0N A;  4U83 A;  4Q5B A;  1UKW A;  3MPI A;  3FO3 A;  3GQT A;  3MMO A;  2JBT A;  2YYM A;  1SIR A;  1SIQ A;  3B96 A;  1BUC A;  3D1I A;  3LGQ A;  2C0U A;  3BNJ A;  4Q5C A;  2IX5 A;  2ZAF A;  3GM6 A;  3MDD A;  3MDE A;  3EON A;  2CX9 A;  2RFQ A;  4P13 A;  4RM7 A;  3X0X A;  2JBS A;  4W9U A;  4OO2 A;  4X28 C;  1FS7 A;  2YYK A;  3OIB A;  3BNH A;  5K3J A;  4X28 A;  4G5E A;  3EOM A;  3RKH A;  2A1T A;  3UU9 A;  5K3H A;  1UDY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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